Wall clock time and date at job start Tue Mar 31 2020 10:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.81403 * 102.99864 * 2 1 4 4 H 1.09001 * 109.46717 * 55.00383 * 3 2 1 5 5 C 1.52998 * 109.47082 * 294.99821 * 3 2 1 6 6 C 1.52999 * 109.46940 * 174.99814 * 3 2 1 7 7 C 1.53001 * 109.47064 * 295.00238 * 6 3 2 8 8 C 1.50705 * 109.47178 * 179.97438 * 7 6 3 9 9 O 1.21283 * 119.99581 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00274 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00281 * 180.02562 * 10 8 7 12 12 C 1.52992 * 109.47121 * 179.97438 * 11 10 8 13 13 H 1.08999 * 109.50087 * 304.92560 * 12 11 10 14 14 C 1.53046 * 109.49719 * 184.83566 * 12 11 10 15 15 C 1.53038 * 109.54143 * 178.68181 * 14 12 11 16 16 C 1.53193 * 109.31269 * 61.36419 * 15 14 12 17 17 N 1.46929 * 108.77531 * 305.36804 * 16 15 14 18 18 C 1.36939 * 120.63064 * 233.63081 * 17 16 15 19 19 H 1.07995 * 119.99903 * 151.80682 * 18 17 16 20 20 C 1.38812 * 119.99897 * 331.80217 * 18 17 16 21 21 N 1.31626 * 120.00034 * 343.09548 * 20 18 17 22 22 Si 1.86791 * 119.99966 * 163.09059 * 20 18 17 23 23 H 1.48500 * 109.47340 * 60.00419 * 22 20 18 24 24 H 1.48507 * 109.47285 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47498 * 300.00068 * 22 20 18 26 26 C 1.46927 * 118.73948 * 53.60562 * 17 16 15 27 27 H 1.09008 * 109.46736 * 59.99961 * 1 2 3 28 28 H 1.08995 * 109.47229 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47361 * 300.00227 * 1 2 3 30 30 H 1.08999 * 109.47117 * 60.00627 * 5 3 2 31 31 H 1.09007 * 109.46677 * 180.02562 * 5 3 2 32 32 H 1.08997 * 109.47317 * 299.99787 * 5 3 2 33 33 H 1.09002 * 109.47394 * 55.00027 * 6 3 2 34 34 H 1.08997 * 109.47393 * 175.00387 * 6 3 2 35 35 H 1.08997 * 109.47382 * 299.99640 * 7 6 3 36 36 H 1.09000 * 109.47401 * 59.99920 * 7 6 3 37 37 H 0.97000 * 119.99537 * 359.97438 * 10 8 7 38 38 H 1.09004 * 109.46860 * 300.00098 * 11 10 8 39 39 H 1.09000 * 109.47168 * 59.99542 * 11 10 8 40 40 H 1.09000 * 109.46275 * 298.70714 * 14 12 11 41 41 H 1.09000 * 109.46169 * 58.66126 * 14 12 11 42 42 H 1.09005 * 109.49734 * 301.41414 * 15 14 12 43 43 H 1.08996 * 109.50130 * 181.31572 * 15 14 12 44 44 H 1.08995 * 109.58649 * 185.58148 * 16 15 14 45 45 H 1.09002 * 109.70211 * 65.22455 * 16 15 14 46 46 H 0.96994 * 119.99820 * 180.02562 * 21 20 18 47 47 H 1.08996 * 109.58501 * 186.60462 * 26 17 16 48 48 H 1.09003 * 109.58473 * 66.18125 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 0.8419 5 6 1.7428 2.4016 -1.3073 6 6 3.7370 1.9412 0.1258 7 6 4.1988 1.4191 1.4878 8 6 5.6911 1.5896 1.6114 9 8 6.3230 2.0799 0.6997 10 7 6.3234 1.1971 2.7351 11 6 7.7739 1.3634 2.8555 12 6 8.2356 0.8423 4.2179 13 1 7.6751 1.3425 5.0077 14 6 9.7294 1.1250 4.3934 15 6 10.1852 0.6338 5.7693 16 6 9.9648 -0.8792 5.8656 17 7 8.5591 -1.1731 5.5550 18 6 7.7909 -1.9032 6.4222 19 1 6.7223 -1.7504 6.4569 20 6 8.3856 -2.8397 7.2566 21 7 9.6030 -3.2699 7.0009 22 14 7.4583 -3.4892 8.7423 23 1 6.2070 -4.1515 8.2941 24 1 8.3067 -4.4705 9.4652 25 1 7.1242 -2.3617 9.6492 26 6 7.9932 -0.6682 4.2966 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 0.6636 2.2779 -1.3969 31 1 1.9885 3.4636 -1.3075 32 1 2.2355 1.9150 -2.1491 33 1 4.2340 1.3804 -0.6658 34 1 3.9903 2.9976 0.0367 35 1 3.7019 1.9799 2.2794 36 1 3.9456 0.3627 1.5769 37 1 5.8179 0.8053 3.4644 38 1 8.2709 0.8023 2.0641 39 1 8.0273 2.4197 2.7660 40 1 10.2911 0.6047 3.6177 41 1 9.9080 2.1973 4.3133 42 1 9.6066 1.1358 6.5449 43 1 11.2437 0.8564 5.9029 44 1 10.1944 -1.2183 6.8757 45 1 10.6113 -1.3908 5.1526 46 1 10.0184 -3.9246 7.5837 47 1 6.9220 -0.8681 4.2716 48 1 8.4788 -1.1606 3.4541 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359445856.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:38 Heat of formation + Delta-G solvation = -47.619070 kcal Electronic energy + Delta-G solvation = -24140.051057 eV Core-core repulsion = 20741.540511 eV Total energy + Delta-G solvation = -3398.510546 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.71785 -37.83005 -35.80773 -34.72122 -32.99070 -31.33292 -30.43934 -30.15190 -28.97090 -26.02350 -25.28218 -24.19020 -22.13578 -21.76925 -20.89666 -20.20144 -19.01764 -17.12583 -16.83464 -16.55089 -15.83324 -15.67694 -15.07114 -14.82470 -14.49661 -14.36057 -14.04747 -13.89531 -13.66857 -13.43411 -13.23479 -12.92747 -12.80283 -12.73705 -12.34769 -12.20468 -12.16081 -11.89427 -11.64670 -11.39559 -11.28144 -11.20706 -11.00535 -10.70188 -10.50058 -10.24229 -10.17821 -10.03704 -9.95046 -9.80326 -9.51268 -9.42073 -8.87175 -8.46474 -7.94226 -6.67185 -5.79309 -3.22438 1.39008 2.28221 2.76060 3.31823 3.37404 3.43463 3.44078 4.37697 4.43126 4.47904 4.77601 4.79758 4.82900 4.93806 5.04199 5.10914 5.20000 5.30076 5.31669 5.36828 5.44641 5.45235 5.48179 5.52070 5.63108 5.73993 5.82051 5.85169 5.97811 6.00038 6.01896 6.25181 6.34282 6.38508 6.56389 6.59937 6.71096 6.78776 6.86404 6.97586 7.39912 7.64633 7.67574 7.77964 8.34331 8.44415 9.20526 9.84013 10.41124 11.29048 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.013998 B = 0.002766 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.836619 B =10120.667104 C =11823.983048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.255 6.255 3 C -0.058 4.058 4 H 0.088 0.912 5 C -0.148 4.148 6 C -0.082 4.082 7 C -0.145 4.145 8 C 0.511 3.489 9 O -0.551 6.551 10 N -0.724 5.724 11 C 0.127 3.873 12 C -0.117 4.117 13 H 0.072 0.928 14 C -0.100 4.100 15 C -0.141 4.141 16 C 0.169 3.831 17 N -0.591 5.591 18 C -0.255 4.255 19 H 0.064 0.936 20 C 0.003 3.997 21 N -0.902 5.902 22 Si 0.902 3.098 23 H -0.282 1.282 24 H -0.291 1.291 25 H -0.284 1.284 26 C 0.154 3.846 27 H 0.075 0.925 28 H 0.100 0.900 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.104 0.896 37 H 0.403 0.597 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.046 0.954 42 H 0.053 0.947 43 H 0.049 0.951 44 H 0.086 0.914 45 H 0.018 0.982 46 H 0.254 0.746 47 H 0.050 0.950 48 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.431 11.690 -12.164 22.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S -0.030 6.030 3 C -0.186 4.186 4 H 0.106 0.894 5 C -0.207 4.207 6 C -0.121 4.121 7 C -0.185 4.185 8 C 0.298 3.702 9 O -0.429 6.429 10 N -0.375 5.375 11 C 0.003 3.997 12 C -0.138 4.138 13 H 0.091 0.909 14 C -0.138 4.138 15 C -0.181 4.181 16 C 0.043 3.957 17 N -0.314 5.314 18 C -0.384 4.384 19 H 0.082 0.918 20 C -0.196 4.196 21 N -0.546 5.546 22 Si 0.732 3.268 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.210 1.210 26 C 0.028 3.972 27 H 0.094 0.906 28 H 0.118 0.882 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.111 0.889 36 H 0.122 0.878 37 H 0.238 0.762 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.104 0.896 45 H 0.036 0.964 46 H 0.064 0.936 47 H 0.069 0.931 48 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -13.196 11.005 -12.701 21.367 hybrid contribution -1.534 0.381 1.235 2.006 sum -14.730 11.386 -11.466 21.865 Atomic orbital electron populations 1.23406 0.94791 1.06428 1.04714 1.87106 1.06771 1.11262 1.97834 1.23252 1.00241 0.93759 1.01398 0.89412 1.22072 1.01038 1.01143 0.96399 1.21170 0.90886 1.02934 0.97140 1.21767 0.92587 1.04759 0.99415 1.20632 0.89996 0.77561 0.82026 1.90679 1.68400 1.44667 1.39172 1.46111 1.09373 1.63459 1.18603 1.21442 0.79444 1.00474 0.98342 1.21948 0.97177 1.00029 0.94650 0.90933 1.21342 0.94651 0.99205 0.98592 1.22168 0.99018 1.01097 0.95784 1.20794 0.84693 0.88555 1.01650 1.44029 1.09031 1.60807 1.17504 1.19118 0.91302 1.13811 1.14201 0.91790 1.25049 0.97094 0.96603 1.00833 1.70029 1.14929 1.31840 1.37812 0.86374 0.79043 0.78303 0.83064 1.20859 1.21643 1.21049 1.20894 0.97053 0.89769 0.89533 0.90623 0.88178 0.90592 0.92598 0.91521 0.91159 0.90100 0.89762 0.88929 0.87770 0.76171 0.91678 0.92138 0.92489 0.93493 0.92778 0.93203 0.89609 0.96433 0.93563 0.93123 0.96378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.79 10.45 101.05 1.06 0.26 16 2 S -0.26 -2.36 20.60 -107.50 -2.21 -4.58 16 3 C -0.06 -0.45 2.82 -26.73 -0.08 -0.53 16 4 H 0.09 0.60 8.14 -51.92 -0.42 0.18 16 5 C -0.15 -0.97 9.10 37.16 0.34 -0.63 16 6 C -0.08 -0.79 3.97 -26.73 -0.11 -0.89 16 7 C -0.15 -1.45 5.53 -27.88 -0.15 -1.60 16 8 C 0.51 6.93 7.83 -10.98 -0.09 6.85 16 9 O -0.55 -9.38 15.98 5.56 0.09 -9.29 16 10 N -0.72 -9.63 5.33 -60.30 -0.32 -9.95 16 11 C 0.13 1.87 5.07 -4.05 -0.02 1.85 16 12 C -0.12 -1.93 2.38 -90.50 -0.21 -2.14 16 13 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 14 C -0.10 -1.65 5.17 -26.69 -0.14 -1.79 16 15 C -0.14 -2.66 6.08 -26.61 -0.16 -2.82 16 16 C 0.17 3.99 5.30 -3.71 -0.02 3.97 16 17 N -0.59 -14.52 2.99 -172.32 -0.52 -15.04 16 18 C -0.25 -6.86 9.58 -15.06 -0.14 -7.00 16 19 H 0.06 1.67 7.88 -52.49 -0.41 1.26 16 20 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16 21 N -0.90 -26.07 11.20 55.49 0.62 -25.45 16 22 Si 0.90 21.43 29.59 -169.99 -5.03 16.40 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 C 0.15 3.11 5.60 -3.71 -0.02 3.09 16 27 H 0.07 0.41 7.14 -51.92 -0.37 0.03 16 28 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16 30 H 0.05 0.32 6.92 -51.93 -0.36 -0.04 16 31 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 34 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.10 1.06 7.13 -51.93 -0.37 0.69 16 37 H 0.40 4.81 7.70 -40.82 -0.31 4.49 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.09 2.28 6.06 -51.93 -0.31 1.96 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 47 H 0.05 0.98 7.13 -51.93 -0.37 0.61 16 48 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 387.42 15.07 5.84 5.84 Total: -1.00 -31.27 387.42 -10.20 -41.47 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -8.83 Total: 1.99 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: 0.17 Total: -1.39 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: -0.22 Total: -50.43 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.09 Total: -9.29 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Atomic # 16 Polarization: -2.36 SS G_CDS: -2.21 Total: -4.58 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.27 -10.20 -41.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359445856.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.151 kcal (2) G-P(sol) polarization free energy of solvation -31.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds