Wall clock time and date at job start Tue Mar 31 2020 10:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.81403 * 102.99864 * 2 1 4 4 H 1.09001 * 109.46717 * 55.00383 * 3 2 1 5 5 C 1.52998 * 109.47082 * 294.99821 * 3 2 1 6 6 C 1.52999 * 109.46940 * 174.99814 * 3 2 1 7 7 C 1.53001 * 109.47064 * 295.00238 * 6 3 2 8 8 C 1.50705 * 109.47178 * 179.97438 * 7 6 3 9 9 O 1.21283 * 119.99581 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00274 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00281 * 180.02562 * 10 8 7 12 12 C 1.52992 * 109.47121 * 179.97438 * 11 10 8 13 13 H 1.08999 * 109.50087 * 304.92560 * 12 11 10 14 14 C 1.53046 * 109.49719 * 184.83566 * 12 11 10 15 15 C 1.53038 * 109.54143 * 178.68181 * 14 12 11 16 16 C 1.53193 * 109.31269 * 61.36419 * 15 14 12 17 17 N 1.46929 * 108.77531 * 305.36804 * 16 15 14 18 18 C 1.36939 * 120.63064 * 233.63081 * 17 16 15 19 19 H 1.07995 * 119.99903 * 151.80682 * 18 17 16 20 20 C 1.38812 * 119.99897 * 331.80217 * 18 17 16 21 21 N 1.31626 * 120.00034 * 343.09548 * 20 18 17 22 22 Si 1.86791 * 119.99966 * 163.09059 * 20 18 17 23 23 H 1.48500 * 109.47340 * 60.00419 * 22 20 18 24 24 H 1.48507 * 109.47285 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47498 * 300.00068 * 22 20 18 26 26 C 1.46927 * 118.73948 * 53.60562 * 17 16 15 27 27 H 1.09008 * 109.46736 * 59.99961 * 1 2 3 28 28 H 1.08995 * 109.47229 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47361 * 300.00227 * 1 2 3 30 30 H 1.08999 * 109.47117 * 60.00627 * 5 3 2 31 31 H 1.09007 * 109.46677 * 180.02562 * 5 3 2 32 32 H 1.08997 * 109.47317 * 299.99787 * 5 3 2 33 33 H 1.09002 * 109.47394 * 55.00027 * 6 3 2 34 34 H 1.08997 * 109.47393 * 175.00387 * 6 3 2 35 35 H 1.08997 * 109.47382 * 299.99640 * 7 6 3 36 36 H 1.09000 * 109.47401 * 59.99920 * 7 6 3 37 37 H 0.97000 * 119.99537 * 359.97438 * 10 8 7 38 38 H 1.09004 * 109.46860 * 300.00098 * 11 10 8 39 39 H 1.09000 * 109.47168 * 59.99542 * 11 10 8 40 40 H 1.09000 * 109.46275 * 298.70714 * 14 12 11 41 41 H 1.09000 * 109.46169 * 58.66126 * 14 12 11 42 42 H 1.09005 * 109.49734 * 301.41414 * 15 14 12 43 43 H 1.08996 * 109.50130 * 181.31572 * 15 14 12 44 44 H 1.08995 * 109.58649 * 185.58148 * 16 15 14 45 45 H 1.09002 * 109.70211 * 65.22455 * 16 15 14 46 46 H 0.96994 * 119.99820 * 180.02562 * 21 20 18 47 47 H 1.08996 * 109.58501 * 186.60462 * 26 17 16 48 48 H 1.09003 * 109.58473 * 66.18125 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 0.8419 5 6 1.7428 2.4016 -1.3073 6 6 3.7370 1.9412 0.1258 7 6 4.1988 1.4191 1.4878 8 6 5.6911 1.5896 1.6114 9 8 6.3230 2.0799 0.6997 10 7 6.3234 1.1971 2.7351 11 6 7.7739 1.3634 2.8555 12 6 8.2356 0.8423 4.2179 13 1 7.6751 1.3425 5.0077 14 6 9.7294 1.1250 4.3934 15 6 10.1852 0.6338 5.7693 16 6 9.9648 -0.8792 5.8656 17 7 8.5591 -1.1731 5.5550 18 6 7.7909 -1.9032 6.4222 19 1 6.7223 -1.7504 6.4569 20 6 8.3856 -2.8397 7.2566 21 7 9.6030 -3.2699 7.0009 22 14 7.4583 -3.4892 8.7423 23 1 6.2070 -4.1515 8.2941 24 1 8.3067 -4.4705 9.4652 25 1 7.1242 -2.3617 9.6492 26 6 7.9932 -0.6682 4.2966 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 0.6636 2.2779 -1.3969 31 1 1.9885 3.4636 -1.3075 32 1 2.2355 1.9150 -2.1491 33 1 4.2340 1.3804 -0.6658 34 1 3.9903 2.9976 0.0367 35 1 3.7019 1.9799 2.2794 36 1 3.9456 0.3627 1.5769 37 1 5.8179 0.8053 3.4644 38 1 8.2709 0.8023 2.0641 39 1 8.0273 2.4197 2.7660 40 1 10.2911 0.6047 3.6177 41 1 9.9080 2.1973 4.3133 42 1 9.6066 1.1358 6.5449 43 1 11.2437 0.8564 5.9029 44 1 10.1944 -1.2183 6.8757 45 1 10.6113 -1.3908 5.1526 46 1 10.0184 -3.9246 7.5837 47 1 6.9220 -0.8681 4.2716 48 1 8.4788 -1.1606 3.4541 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359445856.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:37 Heat of formation + Delta-G solvation = -65.559012 kcal Electronic energy + Delta-G solvation = -24140.828991 eV Core-core repulsion = 20741.540511 eV Total energy + Delta-G solvation = -3399.288480 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.85498 -39.36740 -36.63891 -36.08169 -34.64982 -32.39345 -32.26594 -31.37201 -29.51212 -27.33100 -27.07061 -25.17554 -23.81149 -22.68522 -22.25443 -21.36537 -20.52031 -18.68629 -17.96278 -17.55357 -16.97930 -16.79106 -16.62394 -16.09889 -15.68213 -15.40399 -15.10491 -15.01238 -14.94102 -14.50883 -14.43227 -14.09937 -13.99684 -13.74800 -13.62196 -13.44045 -13.34012 -13.01263 -12.84475 -12.58633 -12.46757 -12.34117 -12.29394 -12.05346 -11.97481 -11.94179 -11.81954 -11.57663 -11.33876 -11.10273 -10.79961 -10.65614 -10.51705 -10.02911 -8.66867 -8.63754 -7.85907 -5.32107 0.79248 1.48240 1.50568 1.57121 1.66760 1.73716 2.27855 2.52271 3.28863 3.59711 3.66057 3.74775 4.00022 4.01429 4.03697 4.09801 4.18307 4.35672 4.37386 4.39587 4.41623 4.49583 4.58811 4.62153 4.71570 4.77547 4.80857 4.82924 4.88999 4.92101 4.96404 5.01672 5.07030 5.10847 5.19188 5.24490 5.28454 5.34005 5.40600 5.52062 5.58137 5.67498 5.78790 6.39911 6.59146 7.15833 7.27982 7.87133 8.39499 9.20387 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.013998 B = 0.002766 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.836619 B =10120.667104 C =11823.983048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 S -0.318 6.318 3 C -0.042 4.042 4 H 0.104 0.896 5 C -0.146 4.146 6 C -0.079 4.079 7 C -0.136 4.136 8 C 0.510 3.490 9 O -0.588 6.588 10 N -0.721 5.721 11 C 0.137 3.863 12 C -0.099 4.099 13 H 0.078 0.922 14 C -0.098 4.098 15 C -0.129 4.129 16 C 0.172 3.828 17 N -0.609 5.609 18 C -0.262 4.262 19 H 0.071 0.929 20 C -0.053 4.053 21 N -0.937 5.937 22 Si 0.968 3.032 23 H -0.274 1.274 24 H -0.297 1.297 25 H -0.276 1.276 26 C 0.153 3.847 27 H 0.086 0.914 28 H 0.103 0.897 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.085 0.915 35 H 0.120 0.880 36 H 0.104 0.896 37 H 0.412 0.588 38 H 0.051 0.949 39 H 0.071 0.929 40 H 0.053 0.947 41 H 0.080 0.920 42 H 0.054 0.946 43 H 0.069 0.931 44 H 0.051 0.949 45 H -0.009 1.009 46 H 0.249 0.751 47 H 0.057 0.943 48 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.606 13.644 -12.004 24.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 S -0.093 6.093 3 C -0.171 4.171 4 H 0.122 0.878 5 C -0.205 4.205 6 C -0.118 4.118 7 C -0.176 4.176 8 C 0.298 3.702 9 O -0.469 6.469 10 N -0.373 5.373 11 C 0.013 3.987 12 C -0.120 4.120 13 H 0.096 0.904 14 C -0.136 4.136 15 C -0.168 4.168 16 C 0.047 3.953 17 N -0.332 5.332 18 C -0.393 4.393 19 H 0.089 0.911 20 C -0.248 4.248 21 N -0.584 5.584 22 Si 0.796 3.204 23 H -0.200 1.200 24 H -0.224 1.224 25 H -0.202 1.202 26 C 0.027 3.973 27 H 0.105 0.895 28 H 0.122 0.878 29 H 0.105 0.895 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.138 0.862 36 H 0.122 0.878 37 H 0.248 0.752 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.071 0.929 41 H 0.099 0.901 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.070 0.930 45 H 0.009 0.991 46 H 0.058 0.942 47 H 0.075 0.925 48 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges -15.402 12.977 -12.546 23.729 hybrid contribution -0.866 -0.250 1.123 1.440 sum -16.268 12.727 -11.424 23.604 Atomic orbital electron populations 1.23426 0.91618 1.07069 1.05825 1.87331 1.10403 1.13533 1.97999 1.23185 0.98852 0.92345 1.02678 0.87771 1.22061 1.01675 1.01444 0.95293 1.21109 0.92098 1.02459 0.96094 1.21767 0.89975 1.05221 1.00598 1.21230 0.91308 0.76471 0.81208 1.90664 1.69466 1.46402 1.40346 1.46093 1.08860 1.63301 1.19002 1.21231 0.80288 1.00662 0.96554 1.21705 0.97530 0.96857 0.95861 0.90371 1.21345 0.94328 1.01130 0.96779 1.21994 1.00465 0.96997 0.97391 1.20635 0.84144 0.91770 0.98798 1.44307 1.09164 1.60949 1.18818 1.19521 0.91936 1.13441 1.14364 0.91105 1.25838 0.98033 0.97379 1.03578 1.70198 1.16613 1.32762 1.38786 0.85336 0.77800 0.77590 0.79691 1.19975 1.22377 1.20226 1.21013 0.96982 0.92148 0.87121 0.89460 0.87811 0.89474 0.91359 0.90499 0.92263 0.92439 0.89652 0.86199 0.87784 0.75217 0.93014 0.91051 0.92854 0.90130 0.92725 0.91268 0.93020 0.99075 0.94205 0.92463 0.97971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.45 113.37 1.19 0.01 16 2 S -0.32 -5.54 20.60 -56.49 -1.16 -6.70 16 3 C -0.04 -0.58 2.82 30.59 0.09 -0.49 16 4 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 5 C -0.15 -1.65 9.10 71.98 0.66 -0.99 16 6 C -0.08 -1.41 3.97 30.59 0.12 -1.29 16 7 C -0.14 -2.48 5.53 29.85 0.16 -2.32 16 8 C 0.51 13.17 7.83 87.66 0.69 13.85 16 9 O -0.59 -19.65 15.98 -3.04 -0.05 -19.69 16 10 N -0.72 -17.95 5.33 -463.07 -2.47 -20.42 16 11 C 0.14 3.80 5.07 86.38 0.44 4.24 16 12 C -0.10 -3.08 2.38 -10.72 -0.03 -3.11 16 13 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 14 C -0.10 -3.02 5.17 30.62 0.16 -2.86 16 15 C -0.13 -4.72 6.08 30.67 0.19 -4.53 16 16 C 0.17 8.33 5.30 86.36 0.46 8.79 16 17 N -0.61 -30.17 2.99 -699.10 -2.09 -32.26 16 18 C -0.26 -14.19 9.58 84.03 0.81 -13.38 16 19 H 0.07 3.65 7.88 -2.91 -0.02 3.63 16 20 C -0.05 -2.95 4.92 84.86 0.42 -2.53 16 21 N -0.94 -55.85 11.20 21.65 0.24 -55.61 16 22 Si 0.97 44.41 29.59 68.60 2.03 46.44 16 23 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 24 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 25 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 26 C 0.15 6.11 5.60 86.36 0.48 6.60 16 27 H 0.09 0.72 7.14 -2.39 -0.02 0.70 16 28 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.09 0.73 8.14 -2.39 -0.02 0.72 16 30 H 0.07 0.61 6.92 -2.39 -0.02 0.59 16 31 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.79 16 33 H 0.06 1.30 8.10 -2.39 -0.02 1.28 16 34 H 0.09 1.51 8.10 -2.39 -0.02 1.49 16 35 H 0.12 1.55 8.14 -2.39 -0.02 1.54 16 36 H 0.10 1.98 7.13 -2.39 -0.02 1.96 16 37 H 0.41 8.96 7.70 -92.71 -0.71 8.25 16 38 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 39 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 43 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.05 2.84 6.06 -2.39 -0.01 2.82 16 45 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 46 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 47 H 0.06 2.17 7.13 -2.39 -0.02 2.15 16 48 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 Total: -1.00 -69.17 387.42 2.52 -66.65 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: 0.20 Total: 19.62 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: 5.82 Total: 1.98 kcal Atomic # 7 Polarization: -103.97 SS G_CDS: -4.32 Total: -108.29 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.05 Total: -19.69 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: -5.54 SS G_CDS: -1.16 Total: -6.70 kcal Total: -69.17 2.52 -66.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359445856.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.091 kcal (2) G-P(sol) polarization free energy of solvation -69.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds