Wall clock time and date at job start Tue Mar 31 2020 10:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81402 * 102.99806 * 2 1 4 4 H 1.08997 * 109.46940 * 304.99573 * 3 2 1 5 5 C 1.52996 * 109.47407 * 64.99810 * 3 2 1 6 6 C 1.53009 * 109.46875 * 185.00029 * 3 2 1 7 7 C 1.52999 * 109.47240 * 64.99798 * 6 3 2 8 8 C 1.50694 * 109.47143 * 180.02562 * 7 6 3 9 9 O 1.21283 * 120.00038 * 359.72315 * 8 7 6 10 10 N 1.34778 * 120.00035 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99804 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.46912 * 180.02562 * 11 10 8 13 13 H 1.09001 * 109.49978 * 304.93813 * 12 11 10 14 14 C 1.53047 * 109.49666 * 184.84003 * 12 11 10 15 15 C 1.53044 * 109.53565 * 178.68137 * 14 12 11 16 16 C 1.53193 * 109.31108 * 61.36834 * 15 14 12 17 17 N 1.46921 * 108.77628 * 305.36316 * 16 15 14 18 18 C 1.36941 * 120.63247 * 233.63099 * 17 16 15 19 19 H 1.07996 * 120.00354 * 151.80568 * 18 17 16 20 20 C 1.38810 * 119.99888 * 331.81038 * 18 17 16 21 21 N 1.31619 * 119.99684 * 343.08066 * 20 18 17 22 22 Si 1.86796 * 120.00288 * 163.07905 * 20 18 17 23 23 H 1.48509 * 109.46713 * 89.99993 * 22 20 18 24 24 H 1.48500 * 109.47444 * 209.99588 * 22 20 18 25 25 H 1.48505 * 109.47147 * 330.00440 * 22 20 18 26 26 C 1.46929 * 118.73963 * 53.60620 * 17 16 15 27 27 H 1.09002 * 109.47190 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47631 * 300.00206 * 1 2 3 29 29 H 1.09004 * 109.47367 * 60.00089 * 1 2 3 30 30 H 1.09006 * 109.47137 * 59.99801 * 5 3 2 31 31 H 1.09000 * 109.47397 * 179.97438 * 5 3 2 32 32 H 1.08994 * 109.47117 * 299.99889 * 5 3 2 33 33 H 1.09001 * 109.46935 * 304.99686 * 6 3 2 34 34 H 1.08998 * 109.46599 * 184.99936 * 6 3 2 35 35 H 1.09001 * 109.47248 * 60.00080 * 7 6 3 36 36 H 1.09004 * 109.47219 * 300.00024 * 7 6 3 37 37 H 0.96997 * 120.00025 * 359.97438 * 10 8 7 38 38 H 1.09004 * 109.47462 * 300.00252 * 11 10 8 39 39 H 1.09001 * 109.46835 * 60.00204 * 11 10 8 40 40 H 1.08989 * 109.46235 * 298.70457 * 14 12 11 41 41 H 1.09000 * 109.45859 * 58.66575 * 14 12 11 42 42 H 1.08994 * 109.49820 * 301.41793 * 15 14 12 43 43 H 1.09001 * 109.49471 * 181.31542 * 15 14 12 44 44 H 1.08999 * 109.58293 * 185.57273 * 16 15 14 45 45 H 1.08998 * 109.70508 * 65.21736 * 16 15 14 46 46 H 0.97011 * 119.99890 * 179.97438 * 21 20 18 47 47 H 1.09004 * 109.58900 * 186.60725 * 26 17 16 48 48 H 1.09001 * 109.58199 * 66.18236 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7294 2.2541 -0.8418 5 6 1.7427 2.4016 1.3073 6 6 3.7370 1.9412 -0.1257 7 6 4.1989 1.4191 -1.4877 8 6 5.6910 1.5896 -1.6113 9 8 6.3222 2.0850 -0.7018 10 7 6.3234 1.1972 -2.7349 11 6 7.7740 1.3634 -2.8552 12 6 8.2357 0.8424 -4.2176 13 1 7.9056 -0.1887 -4.3438 14 6 9.7629 0.9039 -4.2972 15 6 10.2277 0.3523 -5.6470 16 6 9.6497 1.2153 -6.7731 17 7 8.1902 1.2798 -6.6179 18 6 7.3626 0.9440 -7.6560 19 1 6.3757 0.5538 -7.4554 20 6 7.7921 1.1050 -8.9661 21 7 8.8293 1.8716 -9.2290 22 14 6.8984 0.2339 -10.3559 23 1 5.8103 1.1055 -10.8677 24 1 7.8553 -0.0591 -11.4530 25 1 6.3187 -1.0370 -9.8518 26 6 7.6353 1.7109 -5.3275 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 2.2353 1.9150 2.1492 31 1 1.9882 3.4636 1.3075 32 1 0.6635 2.2779 1.3968 33 1 4.2339 1.3805 0.6659 34 1 3.9901 2.9976 -0.0366 35 1 3.7020 1.9799 -2.2794 36 1 3.9456 0.3627 -1.5768 37 1 5.8181 0.8047 -3.4639 38 1 8.0273 2.4198 -2.7657 39 1 8.2708 0.8023 -2.0638 40 1 10.0904 1.9384 -4.1954 41 1 10.1927 0.3064 -3.4933 42 1 9.8792 -0.6742 -5.7600 43 1 11.3165 0.3748 -5.6937 44 1 9.8954 0.7703 -7.7372 45 1 10.0678 2.2204 -6.7174 46 1 9.1297 1.9839 -10.1445 47 1 6.5517 1.5928 -5.3379 48 1 7.8894 2.7562 -5.1515 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359445865.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:45 Heat of formation + Delta-G solvation = -47.870239 kcal Electronic energy + Delta-G solvation = -24113.743011 eV Core-core repulsion = 20715.221573 eV Total energy + Delta-G solvation = -3398.521438 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.71840 -37.83486 -35.80973 -34.72393 -32.99701 -31.33647 -30.44818 -30.15773 -28.99043 -26.02649 -25.29135 -24.19220 -22.14288 -21.77317 -20.90016 -20.20262 -19.02229 -17.11193 -16.88246 -16.53356 -15.81239 -15.72091 -15.06323 -14.82227 -14.50358 -14.40235 -14.10145 -13.80575 -13.69387 -13.42926 -13.28546 -12.93615 -12.77911 -12.76095 -12.35005 -12.21986 -12.16473 -11.89378 -11.65752 -11.40157 -11.27187 -11.21945 -11.02509 -10.70668 -10.49991 -10.24435 -10.18411 -10.06820 -9.95712 -9.80839 -9.51839 -9.42207 -8.87228 -8.47814 -7.97201 -6.68119 -5.80558 -3.23530 1.36939 2.25754 2.76122 3.31735 3.35352 3.42758 3.44672 4.37680 4.42869 4.46857 4.76745 4.78740 4.81294 4.93075 5.05190 5.10297 5.19876 5.29012 5.31268 5.37527 5.43773 5.44724 5.48030 5.52859 5.62449 5.73507 5.81425 5.84899 5.97676 5.99583 6.01778 6.24676 6.33929 6.38238 6.55966 6.59198 6.70734 6.78037 6.86086 6.96654 7.39311 7.64541 7.66920 7.77023 8.34330 8.43166 9.19344 9.82962 10.40006 11.27750 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.014896 B = 0.002634 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.197164 B =10628.707210 C =11998.813418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.259 6.259 3 C -0.057 4.057 4 H 0.089 0.911 5 C -0.148 4.148 6 C -0.082 4.082 7 C -0.145 4.145 8 C 0.511 3.489 9 O -0.551 6.551 10 N -0.724 5.724 11 C 0.127 3.873 12 C -0.118 4.118 13 H 0.073 0.927 14 C -0.100 4.100 15 C -0.141 4.141 16 C 0.169 3.831 17 N -0.592 5.592 18 C -0.254 4.254 19 H 0.064 0.936 20 C 0.002 3.998 21 N -0.902 5.902 22 Si 0.901 3.099 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.155 3.845 27 H 0.099 0.901 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.403 0.597 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.047 0.953 42 H 0.054 0.946 43 H 0.049 0.951 44 H 0.086 0.914 45 H 0.017 0.983 46 H 0.254 0.746 47 H 0.050 0.950 48 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.406 -1.731 17.991 21.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S -0.033 6.033 3 C -0.186 4.186 4 H 0.107 0.893 5 C -0.207 4.207 6 C -0.121 4.121 7 C -0.185 4.185 8 C 0.298 3.702 9 O -0.429 6.429 10 N -0.375 5.375 11 C 0.003 3.997 12 C -0.138 4.138 13 H 0.091 0.909 14 C -0.138 4.138 15 C -0.181 4.181 16 C 0.043 3.957 17 N -0.314 5.314 18 C -0.383 4.383 19 H 0.082 0.918 20 C -0.196 4.196 21 N -0.546 5.546 22 Si 0.731 3.269 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.028 3.972 27 H 0.118 0.882 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.113 0.887 36 H 0.120 0.880 37 H 0.238 0.762 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.104 0.896 45 H 0.036 0.964 46 H 0.064 0.936 47 H 0.068 0.932 48 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -11.203 -2.209 18.439 21.688 hybrid contribution -1.530 0.405 -1.249 2.016 sum -12.733 -1.804 17.190 21.468 Atomic orbital electron populations 1.23402 0.94689 1.06382 1.04804 1.86996 1.06900 1.11587 1.97853 1.23258 1.00273 0.93549 1.01486 0.89305 1.22071 1.01031 1.01222 0.96334 1.21174 0.90844 1.03052 0.97056 1.21765 0.92632 1.04598 0.99538 1.20629 0.89973 0.77585 0.82022 1.90679 1.68413 1.44373 1.39455 1.46112 1.09423 1.63537 1.18476 1.21444 0.79371 1.01225 0.97659 1.21951 0.96968 1.01201 0.93705 0.90886 1.21342 0.94085 1.00683 0.97678 1.22169 0.98797 1.00702 0.96406 1.20793 0.82791 0.95671 0.96433 1.44036 1.01732 1.77103 1.08524 1.19143 0.98459 1.35842 0.84902 0.91788 1.25048 0.98614 0.98350 0.97606 1.70041 1.27904 1.37822 1.18822 0.86321 0.78867 0.79665 0.82048 1.21406 1.21561 1.20469 1.20891 0.96083 0.94298 0.85945 0.88226 0.90598 0.90530 0.91203 0.91438 0.92594 0.90192 0.89651 0.88726 0.87958 0.76168 0.91708 0.92105 0.92509 0.93460 0.92750 0.93194 0.89605 0.96444 0.93626 0.93168 0.96421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 10.45 101.05 1.06 0.30 16 2 S -0.26 -2.29 20.60 -107.50 -2.21 -4.50 16 3 C -0.06 -0.44 2.82 -26.73 -0.08 -0.52 16 4 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 5 C -0.15 -0.97 9.10 37.16 0.34 -0.63 16 6 C -0.08 -0.78 3.97 -26.73 -0.11 -0.89 16 7 C -0.15 -1.45 5.53 -27.89 -0.15 -1.60 16 8 C 0.51 6.93 7.83 -10.99 -0.09 6.84 16 9 O -0.55 -9.37 15.98 5.56 0.09 -9.29 16 10 N -0.72 -9.63 5.33 -60.29 -0.32 -9.95 16 11 C 0.13 1.87 5.07 -4.04 -0.02 1.85 16 12 C -0.12 -1.93 2.38 -90.50 -0.21 -2.15 16 13 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 14 C -0.10 -1.65 5.17 -26.68 -0.14 -1.79 16 15 C -0.14 -2.66 6.08 -26.61 -0.16 -2.82 16 16 C 0.17 3.98 5.30 -3.71 -0.02 3.96 16 17 N -0.59 -14.46 2.99 -172.32 -0.52 -14.98 16 18 C -0.25 -6.80 9.58 -15.06 -0.14 -6.95 16 19 H 0.06 1.67 7.88 -52.49 -0.41 1.25 16 20 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 21 N -0.90 -25.96 11.20 55.49 0.62 -25.34 16 22 Si 0.90 21.33 29.59 -169.99 -5.03 16.30 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 C 0.15 3.09 5.60 -3.71 -0.02 3.07 16 27 H 0.10 0.54 8.14 -51.92 -0.42 0.11 16 28 H 0.08 0.39 7.14 -51.93 -0.37 0.02 16 29 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.32 6.92 -51.93 -0.36 -0.04 16 33 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 34 H 0.09 0.84 8.10 -51.93 -0.42 0.42 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.10 0.98 7.14 -51.93 -0.37 0.61 16 37 H 0.40 4.81 7.70 -40.82 -0.31 4.49 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.06 0.94 8.14 -51.94 -0.42 0.52 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.09 2.27 6.06 -51.93 -0.31 1.96 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 47 H 0.05 0.96 7.13 -51.93 -0.37 0.59 16 48 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 387.42 15.07 5.84 5.84 Total: -1.00 -31.12 387.42 -10.20 -41.32 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -8.83 Total: 1.93 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 0.17 Total: -1.34 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: -0.22 Total: -50.26 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.09 Total: -9.29 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.30 kcal Atomic # 16 Polarization: -2.29 SS G_CDS: -2.21 Total: -4.50 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.12 -10.20 -41.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359445865.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.554 kcal (2) G-P(sol) polarization free energy of solvation -31.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds