Wall clock time and date at job start Tue Mar 31 2020 10:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 113.41669 * 2 1 4 4 C 1.53501 * 114.20342 * 133.19692 * 2 1 3 5 5 N 1.47066 * 87.98563 * 87.52036 * 4 2 1 6 6 C 1.34770 * 136.05854 * 207.08589 * 5 4 2 7 7 O 1.21586 * 120.00144 * 185.06887 * 6 5 4 8 8 N 1.34780 * 119.99891 * 5.07095 * 6 5 4 9 9 C 1.46503 * 119.99914 * 185.01734 * 8 6 5 10 10 C 1.52998 * 109.47115 * 184.94398 * 9 8 6 11 11 C 1.50696 * 115.56423 * 90.30669 * 10 9 8 12 12 H 1.08002 * 120.00319 * 220.03757 * 11 10 9 13 13 C 1.37884 * 119.99731 * 40.03777 * 11 10 9 14 14 N 1.31506 * 119.99844 * 11.34851 * 13 11 10 15 15 Si 1.86798 * 119.99593 * 191.34752 * 13 11 10 16 16 H 1.48499 * 109.47133 * 90.00274 * 15 13 11 17 17 H 1.48495 * 109.46991 * 209.99885 * 15 13 11 18 18 H 1.48493 * 109.47543 * 329.99936 * 15 13 11 19 19 C 1.53006 * 117.49734 * 304.62008 * 10 9 8 20 20 C 1.53008 * 60.03074 * 252.52271 * 19 10 9 21 21 C 1.47064 * 87.88537 * 27.33929 * 5 4 2 22 22 H 1.09007 * 113.46761 * 87.43918 * 21 5 4 23 23 C 1.50703 * 113.47295 * 217.88054 * 21 5 4 24 24 C 1.38237 * 119.99467 * 20.21568 * 23 21 5 25 25 C 1.38236 * 119.99526 * 179.78879 * 24 23 21 26 26 C 1.38225 * 120.00341 * 0.47031 * 25 24 23 27 27 C 1.38244 * 120.00145 * 359.76643 * 26 25 24 28 28 C 1.38230 * 120.00236 * 200.50026 * 23 21 5 29 29 H 1.09001 * 109.46877 * 306.30978 * 1 2 3 30 30 H 1.08995 * 109.47109 * 66.30266 * 1 2 3 31 31 H 1.08991 * 109.47147 * 186.31096 * 1 2 3 32 32 H 1.08992 * 113.47060 * 332.73717 * 4 2 1 33 33 H 1.09002 * 113.51755 * 202.30491 * 4 2 1 34 34 H 0.96991 * 120.00013 * 5.01066 * 8 6 5 35 35 H 1.08997 * 109.47320 * 64.93857 * 9 8 6 36 36 H 1.08997 * 109.47105 * 304.94444 * 9 8 6 37 37 H 0.97008 * 119.99641 * 174.99844 * 14 13 11 38 38 H 1.08996 * 117.50155 * 145.02300 * 19 10 9 39 39 H 1.09005 * 117.49646 * 0.02562 * 19 10 9 40 40 H 1.08998 * 117.49470 * 107.47860 * 20 19 10 41 41 H 1.09001 * 117.49518 * 252.47507 * 20 19 10 42 42 H 1.07999 * 120.00313 * 0.02562 * 24 23 21 43 43 H 1.08000 * 119.99385 * 180.25480 * 25 24 23 44 44 H 1.07998 * 120.00678 * 179.78941 * 26 25 24 45 45 H 1.07999 * 120.00184 * 180.02562 * 27 26 25 46 46 H 1.08000 * 119.99988 * 359.97024 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9632 1.0002 0.0000 4 6 2.1594 -0.9584 1.0207 5 7 2.0802 -2.0144 0.0002 6 6 1.9799 -3.3583 0.0002 7 8 2.0270 -3.9715 -1.0486 8 7 1.8273 -4.0227 1.1630 9 6 1.8286 -5.4876 1.1752 10 6 1.5172 -5.9861 2.5878 11 6 0.0581 -6.2085 2.8920 12 1 -0.3417 -5.9275 3.8552 13 6 -0.7665 -6.7708 1.9407 14 7 -0.2492 -7.3157 0.8614 15 14 -2.6184 -6.7586 2.1852 16 1 -3.1881 -5.5232 1.5900 17 1 -3.2129 -7.9470 1.5224 18 1 -2.9263 -6.7960 3.6374 19 6 2.4077 -5.4843 3.7263 20 6 2.5281 -6.9309 3.2426 21 6 2.1651 -0.9589 -1.0204 22 1 3.1883 -0.6939 -1.2867 23 6 1.2970 -1.2174 -2.2249 24 6 0.2348 -2.0976 -2.1352 25 6 -0.5640 -2.3314 -3.2389 26 6 -0.2949 -1.6926 -4.4347 27 6 0.7702 -0.8161 -4.5258 28 6 1.5665 -0.5790 -3.4209 29 1 -0.3633 0.6085 0.8281 30 1 -0.3633 0.4130 -0.9410 31 1 -0.3633 -1.0213 0.1130 32 1 1.5268 -1.1449 1.8884 33 1 3.1811 -0.6939 1.2932 34 1 1.7167 -3.5309 1.9916 35 1 2.8089 -5.8527 0.8689 36 1 1.0711 -5.8574 0.4842 37 1 -0.8223 -7.7750 0.2277 38 1 1.9382 -5.3151 4.6954 39 1 3.2151 -4.7987 3.4690 40 1 3.4145 -7.1968 2.6668 41 1 2.1381 -7.7133 3.8937 42 1 0.0268 -2.5997 -1.2019 43 1 -1.3963 -3.0160 -3.1676 44 1 -0.9170 -1.8778 -5.2979 45 1 0.9802 -0.3166 -5.4601 46 1 2.3988 0.1056 -3.4921 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374018992.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:18 Heat of formation + Delta-G solvation = 67.095492 kcal Electronic energy + Delta-G solvation = -26877.603883 eV Core-core repulsion = 23348.623782 eV Total energy + Delta-G solvation = -3528.980101 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.92950 -38.55883 -37.81849 -36.53537 -33.03937 -32.22930 -31.31900 -30.85291 -30.64785 -27.33228 -25.83512 -25.62811 -24.63200 -22.32036 -21.53092 -21.37090 -20.49410 -19.19707 -18.62273 -17.78036 -16.87663 -16.14274 -15.72063 -15.52254 -14.89907 -14.66447 -14.44978 -14.18497 -14.03867 -13.79360 -13.40530 -13.27452 -12.90098 -12.80925 -12.54973 -12.29691 -12.18146 -11.80747 -11.63069 -11.43271 -11.41252 -11.03204 -10.98281 -10.83539 -10.74041 -10.52259 -10.35082 -10.32227 -9.61477 -9.32187 -9.13902 -8.82375 -8.71274 -8.54919 -8.40381 -8.23640 -7.76746 -6.07280 -4.14374 1.48419 1.64641 2.95159 3.24832 3.33267 3.34343 3.84330 3.94890 4.28480 4.33014 4.49433 4.80907 4.85876 4.98593 5.05725 5.14779 5.21179 5.29434 5.31629 5.41331 5.48137 5.50598 5.68483 5.73119 5.79175 5.88811 5.93329 5.99394 6.02554 6.15583 6.23526 6.31382 6.33748 6.51301 6.58407 6.60586 6.72324 6.74475 6.85814 6.95193 7.05465 7.20062 7.27283 7.55410 7.63036 7.83133 8.04955 8.36660 8.71446 8.83998 9.34548 9.46150 10.93380 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013273 B = 0.004571 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.980854 B = 6123.970221 C = 7021.808409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.116 4.116 3 H 0.095 0.905 4 C 0.101 3.899 5 N -0.664 5.664 6 C 0.725 3.275 7 O -0.583 6.583 8 N -0.724 5.724 9 C 0.161 3.839 10 C 0.043 3.957 11 C -0.493 4.493 12 H 0.061 0.939 13 C 0.071 3.929 14 N -0.871 5.871 15 Si 0.893 3.107 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.274 1.274 19 C -0.211 4.211 20 C -0.192 4.192 21 C 0.194 3.806 22 H 0.093 0.907 23 C -0.086 4.086 24 C -0.064 4.064 25 C -0.123 4.123 26 C -0.120 4.120 27 C -0.131 4.131 28 C -0.113 4.113 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.388 0.612 35 H 0.027 0.973 36 H 0.125 0.875 37 H 0.265 0.735 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.122 0.878 43 H 0.118 0.882 44 H 0.116 0.884 45 H 0.117 0.883 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.765 17.011 -4.236 17.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.135 4.135 3 H 0.114 0.886 4 C -0.023 4.023 5 N -0.406 5.406 6 C 0.429 3.571 7 O -0.461 6.461 8 N -0.376 5.376 9 C 0.039 3.961 10 C 0.042 3.958 11 C -0.530 4.530 12 H 0.080 0.920 13 C -0.132 4.132 14 N -0.508 5.508 15 Si 0.721 3.279 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.199 1.199 19 C -0.248 4.248 20 C -0.230 4.230 21 C 0.090 3.910 22 H 0.111 0.889 23 C -0.087 4.087 24 C -0.082 4.082 25 C -0.141 4.141 26 C -0.138 4.138 27 C -0.149 4.149 28 C -0.131 4.131 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.220 0.780 35 H 0.045 0.955 36 H 0.142 0.858 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.098 0.902 42 H 0.139 0.861 43 H 0.136 0.864 44 H 0.134 0.866 45 H 0.135 0.865 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.728 16.153 -5.203 17.189 hybrid contribution -0.738 -0.057 0.607 0.957 sum 1.991 16.096 -4.596 16.857 Atomic orbital electron populations 1.21556 0.92683 1.02807 1.01811 1.22937 0.97217 0.97714 0.95677 0.88640 1.22937 1.00443 0.85306 0.93615 1.48815 1.79452 1.02821 1.09542 1.15395 0.78209 0.78542 0.85001 1.90930 1.58742 1.65455 1.30935 1.45346 1.76671 1.08679 1.06943 1.21274 1.00825 0.74591 0.99425 1.19193 0.91762 0.96749 0.88129 1.20514 0.90933 1.41714 0.99886 0.92037 1.24987 0.98823 0.94613 0.94825 1.69759 1.35461 1.33792 1.11744 0.86576 0.85285 0.77734 0.78305 1.20505 1.21113 1.19873 1.22847 1.04032 0.97518 1.00421 1.22964 1.02340 0.92109 1.05627 1.21433 0.97487 0.84414 0.87699 0.88925 1.19717 0.96505 0.98089 0.94414 1.21025 0.93255 0.95006 0.98959 1.21161 1.00109 0.99674 0.93186 1.21094 0.97867 0.97350 0.97534 1.20977 0.96230 0.99536 0.98168 1.20837 0.99658 1.00267 0.92354 0.92176 0.92002 0.91791 0.90448 0.90231 0.77971 0.95458 0.85807 0.92419 0.90541 0.91460 0.91575 0.90156 0.86060 0.86351 0.86573 0.86501 0.86443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.41 8.25 37.16 0.31 -1.10 16 2 C -0.12 -1.15 4.68 -89.97 -0.42 -1.57 16 3 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 4 C 0.10 1.11 7.87 -8.51 -0.07 1.04 16 5 N -0.66 -10.41 2.91 -184.36 -0.54 -10.95 16 6 C 0.73 15.04 7.24 -86.92 -0.63 14.41 16 7 O -0.58 -14.50 15.28 5.29 0.08 -14.42 16 8 N -0.72 -15.14 5.45 -65.23 -0.36 -15.50 16 9 C 0.16 3.94 5.45 -4.04 -0.02 3.92 16 10 C 0.04 1.03 1.86 -155.62 -0.29 0.74 16 11 C -0.49 -13.01 9.01 -34.44 -0.31 -13.32 16 12 H 0.06 1.61 7.84 -52.49 -0.41 1.20 16 13 C 0.07 1.91 5.16 -17.82 -0.09 1.82 16 14 N -0.87 -24.46 10.89 55.43 0.60 -23.86 16 15 Si 0.89 20.82 29.56 -169.99 -5.02 15.80 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 19 C -0.21 -4.33 9.36 -26.72 -0.25 -4.58 16 20 C -0.19 -4.30 9.89 -26.69 -0.26 -4.57 16 21 C 0.19 2.52 4.20 -73.41 -0.31 2.21 16 22 H 0.09 1.06 8.14 -51.92 -0.42 0.64 16 23 C -0.09 -1.26 4.26 -104.62 -0.45 -1.71 16 24 C -0.06 -1.09 6.47 -39.58 -0.26 -1.34 16 25 C -0.12 -1.92 10.05 -39.59 -0.40 -2.32 16 26 C -0.12 -1.59 10.05 -39.58 -0.40 -1.99 16 27 C -0.13 -1.60 10.05 -39.58 -0.40 -2.00 16 28 C -0.11 -1.42 9.74 -39.58 -0.39 -1.80 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.66 7.75 -51.93 -0.40 0.26 16 31 H 0.06 0.86 6.53 -51.93 -0.34 0.52 16 32 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.39 7.28 7.78 -40.82 -0.32 6.96 16 35 H 0.03 0.68 7.88 -51.93 -0.41 0.27 16 36 H 0.12 3.51 5.24 -51.93 -0.27 3.24 16 37 H 0.27 7.19 8.32 -40.82 -0.34 6.85 16 38 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 40 H 0.07 1.42 8.03 -51.93 -0.42 1.00 16 41 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 42 H 0.12 2.37 5.35 -52.49 -0.28 2.09 16 43 H 0.12 1.76 8.06 -52.49 -0.42 1.33 16 44 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 45 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 46 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 371.02 15.07 5.59 5.59 Total: -1.00 -31.35 371.02 -11.32 -42.67 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -7.06 Total: 12.82 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -4.63 Total: -12.16 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: -0.29 Total: -50.30 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: 0.08 Total: -14.42 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.35 -11.32 -42.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374018992.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.769 kcal (2) G-P(sol) polarization free energy of solvation -31.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds