Wall clock time and date at job start Tue Mar 31 2020 10:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 113.41669 * 2 1 4 4 C 1.53501 * 114.20342 * 133.19692 * 2 1 3 5 5 N 1.47066 * 87.98563 * 87.52036 * 4 2 1 6 6 C 1.34770 * 136.05854 * 207.08589 * 5 4 2 7 7 O 1.21586 * 120.00144 * 185.06887 * 6 5 4 8 8 N 1.34780 * 119.99891 * 5.07095 * 6 5 4 9 9 C 1.46503 * 119.99914 * 185.01734 * 8 6 5 10 10 C 1.52998 * 109.47115 * 184.94398 * 9 8 6 11 11 C 1.50696 * 115.56423 * 90.30669 * 10 9 8 12 12 H 1.08002 * 120.00319 * 220.03757 * 11 10 9 13 13 C 1.37884 * 119.99731 * 40.03777 * 11 10 9 14 14 N 1.31506 * 119.99844 * 11.34851 * 13 11 10 15 15 Si 1.86798 * 119.99593 * 191.34752 * 13 11 10 16 16 H 1.48499 * 109.47133 * 90.00274 * 15 13 11 17 17 H 1.48495 * 109.46991 * 209.99885 * 15 13 11 18 18 H 1.48493 * 109.47543 * 329.99936 * 15 13 11 19 19 C 1.53006 * 117.49734 * 304.62008 * 10 9 8 20 20 C 1.53008 * 60.03074 * 252.52271 * 19 10 9 21 21 C 1.47064 * 87.88537 * 27.33929 * 5 4 2 22 22 H 1.09007 * 113.46761 * 87.43918 * 21 5 4 23 23 C 1.50703 * 113.47295 * 217.88054 * 21 5 4 24 24 C 1.38237 * 119.99467 * 20.21568 * 23 21 5 25 25 C 1.38236 * 119.99526 * 179.78879 * 24 23 21 26 26 C 1.38225 * 120.00341 * 0.47031 * 25 24 23 27 27 C 1.38244 * 120.00145 * 359.76643 * 26 25 24 28 28 C 1.38230 * 120.00236 * 200.50026 * 23 21 5 29 29 H 1.09001 * 109.46877 * 306.30978 * 1 2 3 30 30 H 1.08995 * 109.47109 * 66.30266 * 1 2 3 31 31 H 1.08991 * 109.47147 * 186.31096 * 1 2 3 32 32 H 1.08992 * 113.47060 * 332.73717 * 4 2 1 33 33 H 1.09002 * 113.51755 * 202.30491 * 4 2 1 34 34 H 0.96991 * 120.00013 * 5.01066 * 8 6 5 35 35 H 1.08997 * 109.47320 * 64.93857 * 9 8 6 36 36 H 1.08997 * 109.47105 * 304.94444 * 9 8 6 37 37 H 0.97008 * 119.99641 * 174.99844 * 14 13 11 38 38 H 1.08996 * 117.50155 * 145.02300 * 19 10 9 39 39 H 1.09005 * 117.49646 * 0.02562 * 19 10 9 40 40 H 1.08998 * 117.49470 * 107.47860 * 20 19 10 41 41 H 1.09001 * 117.49518 * 252.47507 * 20 19 10 42 42 H 1.07999 * 120.00313 * 0.02562 * 24 23 21 43 43 H 1.08000 * 119.99385 * 180.25480 * 25 24 23 44 44 H 1.07998 * 120.00678 * 179.78941 * 26 25 24 45 45 H 1.07999 * 120.00184 * 180.02562 * 27 26 25 46 46 H 1.08000 * 119.99988 * 359.97024 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9632 1.0002 0.0000 4 6 2.1594 -0.9584 1.0207 5 7 2.0802 -2.0144 0.0002 6 6 1.9799 -3.3583 0.0002 7 8 2.0270 -3.9715 -1.0486 8 7 1.8273 -4.0227 1.1630 9 6 1.8286 -5.4876 1.1752 10 6 1.5172 -5.9861 2.5878 11 6 0.0581 -6.2085 2.8920 12 1 -0.3417 -5.9275 3.8552 13 6 -0.7665 -6.7708 1.9407 14 7 -0.2492 -7.3157 0.8614 15 14 -2.6184 -6.7586 2.1852 16 1 -3.1881 -5.5232 1.5900 17 1 -3.2129 -7.9470 1.5224 18 1 -2.9263 -6.7960 3.6374 19 6 2.4077 -5.4843 3.7263 20 6 2.5281 -6.9309 3.2426 21 6 2.1651 -0.9589 -1.0204 22 1 3.1883 -0.6939 -1.2867 23 6 1.2970 -1.2174 -2.2249 24 6 0.2348 -2.0976 -2.1352 25 6 -0.5640 -2.3314 -3.2389 26 6 -0.2949 -1.6926 -4.4347 27 6 0.7702 -0.8161 -4.5258 28 6 1.5665 -0.5790 -3.4209 29 1 -0.3633 0.6085 0.8281 30 1 -0.3633 0.4130 -0.9410 31 1 -0.3633 -1.0213 0.1130 32 1 1.5268 -1.1449 1.8884 33 1 3.1811 -0.6939 1.2932 34 1 1.7167 -3.5309 1.9916 35 1 2.8089 -5.8527 0.8689 36 1 1.0711 -5.8574 0.4842 37 1 -0.8223 -7.7750 0.2277 38 1 1.9382 -5.3151 4.6954 39 1 3.2151 -4.7987 3.4690 40 1 3.4145 -7.1968 2.6668 41 1 2.1381 -7.7133 3.8937 42 1 0.0268 -2.5997 -1.2019 43 1 -1.3963 -3.0160 -3.1676 44 1 -0.9170 -1.8778 -5.2979 45 1 0.9802 -0.3166 -5.4601 46 1 2.3988 0.1056 -3.4921 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374018992.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:17 Heat of formation + Delta-G solvation = 49.280287 kcal Electronic energy + Delta-G solvation = -26878.376408 eV Core-core repulsion = 23348.623782 eV Total energy + Delta-G solvation = -3529.752626 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.05861 -39.96240 -39.08977 -38.27806 -34.75665 -34.25626 -32.45385 -31.89881 -31.71706 -28.67047 -27.70610 -26.67738 -26.27085 -23.42966 -23.07694 -22.54258 -21.81140 -21.09027 -19.94018 -19.08435 -18.01503 -17.91796 -17.15847 -16.79439 -16.57552 -16.03894 -15.90345 -15.59061 -15.20172 -15.18320 -15.00535 -14.46711 -14.24555 -13.98377 -13.86662 -13.58531 -13.43454 -13.30339 -13.14746 -12.91864 -12.75948 -12.58466 -12.36368 -12.33288 -12.12048 -12.01653 -11.88606 -11.43531 -11.29174 -11.09300 -10.98700 -10.69757 -10.17077 -9.97268 -9.74704 -9.61866 -9.28664 -8.11483 -6.23900 0.42127 0.55599 1.35948 1.39203 1.47756 1.65149 2.30141 2.36461 2.85975 2.97037 3.19995 3.36928 3.62446 3.78639 3.88949 4.06812 4.15195 4.22320 4.26230 4.30232 4.48664 4.51303 4.54986 4.59220 4.64688 4.66623 4.72828 4.82325 4.86451 4.91030 4.96699 4.99123 5.11634 5.12104 5.16247 5.18659 5.27477 5.45849 5.52328 5.55893 5.56544 5.64031 5.76350 5.82130 6.00541 6.15036 6.33176 6.44808 6.77706 7.23434 7.38879 7.78065 8.87606 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013273 B = 0.004571 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.980854 B = 6123.970221 C = 7021.808409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.092 4.092 3 H 0.144 0.856 4 C 0.098 3.902 5 N -0.670 5.670 6 C 0.721 3.279 7 O -0.636 6.636 8 N -0.721 5.721 9 C 0.177 3.823 10 C 0.010 3.990 11 C -0.502 4.502 12 H 0.062 0.938 13 C 0.023 3.977 14 N -0.903 5.903 15 Si 0.950 3.050 16 H -0.283 1.283 17 H -0.286 1.286 18 H -0.260 1.260 19 C -0.173 4.173 20 C -0.197 4.197 21 C 0.182 3.818 22 H 0.119 0.881 23 C -0.097 4.097 24 C -0.090 4.090 25 C -0.152 4.152 26 C -0.124 4.124 27 C -0.127 4.127 28 C -0.110 4.110 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.024 0.976 32 H 0.078 0.922 33 H 0.113 0.887 34 H 0.398 0.602 35 H 0.011 0.989 36 H 0.082 0.918 37 H 0.260 0.740 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.106 0.894 44 H 0.139 0.861 45 H 0.154 0.846 46 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.064 20.734 -3.745 21.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.111 4.111 3 H 0.162 0.838 4 C -0.024 4.024 5 N -0.410 5.410 6 C 0.424 3.576 7 O -0.518 6.518 8 N -0.374 5.374 9 C 0.053 3.947 10 C 0.010 3.990 11 C -0.539 4.539 12 H 0.080 0.920 13 C -0.177 4.177 14 N -0.541 5.541 15 Si 0.776 3.224 16 H -0.209 1.209 17 H -0.212 1.212 18 H -0.184 1.184 19 C -0.210 4.210 20 C -0.235 4.235 21 C 0.078 3.922 22 H 0.137 0.863 23 C -0.098 4.098 24 C -0.109 4.109 25 C -0.170 4.170 26 C -0.142 4.142 27 C -0.144 4.144 28 C -0.128 4.128 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.043 0.957 32 H 0.097 0.903 33 H 0.131 0.869 34 H 0.233 0.767 35 H 0.030 0.970 36 H 0.100 0.900 37 H 0.070 0.930 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.124 0.876 44 H 0.157 0.843 45 H 0.171 0.829 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 4.028 19.951 -4.662 20.881 hybrid contribution -1.124 -1.143 0.417 1.657 sum 2.904 18.808 -4.245 19.498 Atomic orbital electron populations 1.21534 0.93852 1.00747 1.02581 1.22908 0.96097 0.99052 0.93038 0.83827 1.23336 1.02573 0.83323 0.93122 1.48869 1.77638 1.01631 1.12857 1.15551 0.77855 0.80273 0.83902 1.90873 1.60906 1.67474 1.32548 1.45069 1.77159 1.07431 1.07756 1.20735 0.98309 0.76689 0.98941 1.19168 0.91482 0.99390 0.89009 1.20810 0.92396 1.40954 0.99749 0.91988 1.25691 1.02654 0.94632 0.94717 1.69933 1.36491 1.35017 1.12614 0.85677 0.80737 0.77259 0.78719 1.20914 1.21163 1.18440 1.22851 1.02721 0.96224 0.99207 1.22956 1.01802 0.93228 1.05519 1.21966 0.98871 0.83903 0.87427 0.86338 1.19964 0.95865 0.97757 0.96219 1.20819 0.95463 0.96806 0.97776 1.21257 1.00454 1.00866 0.94458 1.21375 0.98728 0.97080 0.97014 1.21449 0.94979 0.98453 0.99567 1.21277 1.00330 0.99948 0.91271 0.90035 0.92183 0.95663 0.90332 0.86924 0.76740 0.97025 0.90025 0.93023 0.89263 0.89186 0.91047 0.90625 0.90167 0.87603 0.84316 0.82875 0.82719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 8.25 71.98 0.59 -2.03 16 2 C -0.09 -1.50 4.68 -10.37 -0.05 -1.54 16 3 H 0.14 1.13 8.14 -2.39 -0.02 1.11 16 4 C 0.10 1.88 7.87 83.18 0.65 2.53 16 5 N -0.67 -20.68 2.91 -855.46 -2.49 -23.17 16 6 C 0.72 31.12 7.24 179.06 1.30 32.42 16 7 O -0.64 -33.74 15.28 -3.99 -0.06 -33.80 16 8 N -0.72 -31.15 5.45 -478.54 -2.61 -33.76 16 9 C 0.18 9.10 5.45 86.38 0.47 9.57 16 10 C 0.01 0.51 1.86 -52.90 -0.10 0.41 16 11 C -0.50 -26.94 9.01 25.60 0.23 -26.71 16 12 H 0.06 3.24 7.84 -2.91 -0.02 3.22 16 13 C 0.02 1.29 5.16 84.66 0.44 1.73 16 14 N -0.90 -53.46 10.89 21.45 0.23 -53.23 16 15 Si 0.95 44.09 29.56 68.60 2.03 46.11 16 16 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 17 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 18 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 19 C -0.17 -6.81 9.36 30.60 0.29 -6.53 16 20 C -0.20 -8.78 9.89 30.62 0.30 -8.48 16 21 C 0.18 4.31 4.20 41.13 0.17 4.49 16 22 H 0.12 2.24 8.14 -2.38 -0.02 2.22 16 23 C -0.10 -2.77 4.26 -19.87 -0.08 -2.85 16 24 C -0.09 -3.24 6.47 22.27 0.14 -3.10 16 25 C -0.15 -5.08 10.05 22.27 0.22 -4.86 16 26 C -0.12 -3.22 10.05 22.27 0.22 -3.00 16 27 C -0.13 -2.76 10.05 22.27 0.22 -2.53 16 28 C -0.11 -2.46 9.74 22.27 0.22 -2.24 16 29 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.06 1.23 7.75 -2.39 -0.02 1.21 16 31 H 0.02 0.70 6.53 -2.39 -0.02 0.68 16 32 H 0.08 1.50 8.10 -2.39 -0.02 1.48 16 33 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.40 15.02 7.78 -92.71 -0.72 14.29 16 35 H 0.01 0.61 7.88 -2.39 -0.02 0.59 16 36 H 0.08 4.97 5.24 -2.39 -0.01 4.96 16 37 H 0.26 14.96 8.32 -92.70 -0.77 14.18 16 38 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 39 H 0.09 3.15 8.14 -2.38 -0.02 3.13 16 40 H 0.07 3.08 8.03 -2.39 -0.02 3.06 16 41 H 0.08 3.41 8.14 -2.39 -0.02 3.39 16 42 H 0.08 3.49 5.35 -2.91 -0.02 3.48 16 43 H 0.11 3.57 8.06 -2.91 -0.02 3.55 16 44 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 45 H 0.15 2.22 8.06 -2.91 -0.02 2.19 16 46 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -74.99 371.02 2.60 -72.38 By element: Atomic # 1 Polarization: 37.94 SS G_CDS: 0.26 Total: 38.20 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: 5.24 Total: -12.74 kcal Atomic # 7 Polarization: -105.29 SS G_CDS: -4.86 Total: -110.16 kcal Atomic # 8 Polarization: -33.74 SS G_CDS: -0.06 Total: -33.80 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Total: -74.99 2.60 -72.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374018992.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.665 kcal (2) G-P(sol) polarization free energy of solvation -74.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds