Wall clock time and date at job start Tue Mar 31 2020 11:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47279 * 76.16661 * 3 2 1 5 5 C 1.36910 * 119.99894 * 262.78074 * 4 3 2 6 6 H 1.07994 * 119.99858 * 214.55087 * 5 4 3 7 7 C 1.39013 * 120.00145 * 34.54008 * 5 4 3 8 8 N 1.31392 * 119.99577 * 23.81855 * 7 5 4 9 9 Si 1.86793 * 120.00258 * 203.80788 * 7 5 4 10 10 H 1.48503 * 109.47059 * 60.00477 * 9 7 5 11 11 H 1.48501 * 109.47245 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47411 * 300.00878 * 9 7 5 13 13 C 1.34773 * 120.00125 * 82.77348 * 4 3 2 14 14 O 1.21638 * 120.00232 * 198.05945 * 13 4 3 15 15 C 1.47417 * 120.00183 * 18.05792 * 13 4 3 16 16 C 1.39848 * 120.07478 * 138.12579 * 15 13 4 17 17 C 1.37597 * 119.92537 * 180.02562 * 16 15 13 18 18 C 1.39229 * 120.07304 * 0.02562 * 17 16 15 19 19 N 1.39051 * 119.92186 * 179.97438 * 18 17 16 20 20 C 1.46495 * 120.00488 * 5.98640 * 19 18 17 21 21 C 1.53007 * 109.46922 * 270.00352 * 20 19 18 22 22 C 1.46504 * 119.99949 * 185.98567 * 19 18 17 23 23 C 1.53005 * 109.47156 * 116.38543 * 22 19 18 24 24 C 1.53000 * 109.47388 * 236.38884 * 22 19 18 25 25 C 1.39231 * 120.14994 * 0.24973 * 18 17 16 26 26 C 1.37599 * 120.07473 * 359.45324 * 25 18 17 27 27 H 4.40644 * 5.51373 * 179.97438 * 4 1 2 28 28 H 1.08997 * 109.47429 * 316.15900 * 3 2 1 29 29 H 1.09001 * 109.46751 * 196.16142 * 3 2 1 30 30 H 0.97000 * 119.99801 * 179.97438 * 8 7 5 31 31 H 1.08003 * 120.03942 * 0.02562 * 16 15 13 32 32 H 1.08003 * 119.95852 * 180.02562 * 17 16 15 33 33 H 1.09003 * 109.47582 * 150.00313 * 20 19 18 34 34 H 1.09001 * 109.46996 * 29.99455 * 20 19 18 35 35 H 1.09003 * 109.46985 * 179.97438 * 21 20 19 36 36 H 1.08996 * 109.46998 * 299.99532 * 21 20 19 37 37 H 1.08998 * 109.47453 * 59.99725 * 21 20 19 38 38 H 1.09009 * 109.47036 * 356.39029 * 22 19 18 39 39 H 1.08996 * 109.46660 * 67.55995 * 23 22 19 40 40 H 1.08993 * 109.46821 * 187.55675 * 23 22 19 41 41 H 1.08993 * 109.47267 * 307.56036 * 23 22 19 42 42 H 1.09001 * 109.47133 * 53.84008 * 24 22 19 43 43 H 1.08999 * 109.47058 * 173.83712 * 24 22 19 44 44 H 1.08994 * 109.47050 * 293.84202 * 24 22 19 45 45 H 1.07999 * 119.96172 * 179.72738 * 25 18 17 46 46 H 1.08000 * 120.03621 * 180.25010 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1346 -0.3294 -1.3411 5 6 3.5038 -1.6138 -1.6383 6 1 4.3222 -1.7966 -2.3189 7 6 2.8255 -2.6826 -1.0639 8 7 1.5932 -2.5250 -0.6361 9 14 3.6658 -4.3429 -0.9004 10 1 4.8847 -4.2006 -0.0642 11 1 2.7357 -5.3075 -0.2604 12 1 4.0449 -4.8406 -2.2472 13 6 3.2204 0.6314 -2.2824 14 8 3.3025 0.3264 -3.4571 15 6 3.2147 2.0519 -1.8885 16 6 4.0857 2.9543 -2.5072 17 6 4.0781 4.2794 -2.1367 18 6 3.2050 4.7221 -1.1467 19 7 3.2003 6.0618 -0.7744 20 6 4.0168 7.0297 -1.5111 21 6 5.4028 7.1208 -0.8693 22 6 2.3788 6.5055 0.3546 23 6 3.2849 7.0409 1.4652 24 6 1.4308 7.6134 -0.1088 25 6 2.3405 3.8253 -0.5247 26 6 2.3386 2.5000 -0.8947 27 1 -1.0499 -0.0002 -0.0001 28 1 3.0098 -0.7404 0.7118 29 1 3.0089 0.9879 0.2861 30 1 1.1197 -3.2709 -0.2356 31 1 4.7635 2.6115 -3.2749 32 1 4.7503 4.9768 -2.6145 33 1 3.5371 8.0080 -1.4801 34 1 4.1169 6.7066 -2.5473 35 1 6.0105 7.8406 -1.4177 36 1 5.3029 7.4438 0.1669 37 1 5.8826 6.1425 -0.9002 38 1 1.7976 5.6648 0.7335 39 1 3.7652 7.9603 1.1306 40 1 2.6880 7.2455 2.3539 41 1 4.0467 6.2984 1.7022 42 1 0.8616 7.2673 -0.9716 43 1 0.7459 7.8674 0.7002 44 1 2.0095 8.4948 -0.3851 45 1 1.6675 4.1712 0.2460 46 1 1.6649 1.8057 -0.4146 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491012459.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:01 Heat of formation + Delta-G solvation = 82.358024 kcal Electronic energy + Delta-G solvation = -26397.834745 eV Core-core repulsion = 22869.516478 eV Total energy + Delta-G solvation = -3528.318268 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.91582 -38.62807 -36.56818 -35.09980 -33.21855 -32.30785 -31.38069 -31.13006 -30.18681 -28.12382 -27.41711 -26.34334 -24.83076 -23.70326 -22.63190 -21.37322 -20.14140 -19.12853 -17.77013 -17.71298 -16.70972 -16.15789 -15.77699 -14.97518 -14.71487 -14.53120 -14.23914 -14.10411 -14.05445 -13.65599 -13.53969 -13.30400 -13.04940 -12.84504 -12.72108 -12.43336 -12.21482 -12.04087 -11.94622 -11.76800 -11.61993 -11.41444 -11.30829 -11.01224 -10.96015 -10.83081 -10.54142 -10.40227 -10.16178 -9.54718 -9.33403 -9.04750 -8.96534 -8.48027 -8.33082 -7.62933 -7.00997 -6.23304 -3.86945 1.77410 1.87430 3.08758 3.22646 3.28665 3.31577 3.70500 3.92507 3.99100 4.22715 4.47284 4.55849 4.78668 4.86274 4.97595 5.02856 5.15619 5.17910 5.22010 5.32462 5.34207 5.35531 5.40429 5.51178 5.53628 5.61733 5.64770 5.74074 5.80648 5.90260 5.93630 5.95750 6.04411 6.09715 6.13673 6.34595 6.49489 6.57322 6.60070 6.80851 6.99870 7.12061 7.18164 7.41150 7.60929 7.71717 8.24911 8.53167 8.81459 9.23183 9.40139 10.02334 10.75288 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.021711 B = 0.003452 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.337072 B = 8109.040394 C = 8723.230169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.128 4.128 3 C 0.219 3.781 4 N -0.436 5.436 5 C -0.321 4.321 6 H 0.093 0.907 7 C 0.040 3.960 8 N -0.843 5.843 9 Si 0.914 3.086 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.503 3.497 14 O -0.573 6.573 15 C -0.158 4.158 16 C -0.030 4.030 17 C -0.206 4.206 18 C 0.221 3.779 19 N -0.622 5.622 20 C 0.119 3.881 21 C -0.179 4.179 22 C 0.138 3.862 23 C -0.164 4.164 24 C -0.163 4.163 25 C -0.208 4.208 26 C -0.065 4.065 27 H 0.200 0.800 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.267 0.733 31 H 0.123 0.877 32 H 0.119 0.881 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.094 0.906 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.056 0.944 45 H 0.120 0.880 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.841 19.848 6.449 20.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.129 4.129 3 C 0.096 3.904 4 N -0.155 5.155 5 C -0.448 4.448 6 H 0.111 0.889 7 C -0.167 4.167 8 N -0.478 5.478 9 Si 0.740 3.260 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.198 1.198 13 C 0.293 3.707 14 O -0.457 6.457 15 C -0.163 4.163 16 C -0.050 4.050 17 C -0.229 4.229 18 C 0.120 3.880 19 N -0.334 5.334 20 C -0.004 4.004 21 C -0.237 4.237 22 C 0.035 3.965 23 C -0.222 4.222 24 C -0.221 4.221 25 C -0.229 4.229 26 C -0.084 4.084 27 H 0.217 0.783 28 H 0.107 0.893 29 H 0.097 0.903 30 H 0.077 0.923 31 H 0.141 0.859 32 H 0.137 0.863 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.112 0.888 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.075 0.925 45 H 0.138 0.862 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.752 19.714 5.995 20.680 hybrid contribution -0.023 -0.955 0.160 0.969 sum 1.729 18.759 6.155 19.818 Atomic orbital electron populations 1.24271 0.95331 1.04728 1.01347 1.23004 0.94458 0.96321 0.99139 1.18556 0.84183 1.00119 0.87590 1.43323 1.56860 1.07885 1.07409 1.19371 1.14797 0.80242 1.30422 0.88938 1.25440 0.94210 0.99398 0.97632 1.70123 1.07733 1.32554 1.37386 0.86208 0.79159 0.81728 0.78861 1.19837 1.21099 1.19792 1.18127 0.82378 0.84465 0.85752 1.90617 1.54427 1.83063 1.17557 1.20076 1.00735 0.95335 1.00196 1.20907 0.96040 0.91633 0.96398 1.20501 1.03590 0.96124 1.02640 1.17872 0.93465 0.83486 0.93212 1.46459 1.48613 1.04437 1.33844 1.21300 0.90762 0.92520 0.95810 1.22400 0.97362 1.02370 1.01571 1.21032 0.91598 0.97598 0.86310 1.22310 1.00304 1.01398 0.98178 1.22191 0.99371 0.98621 1.01955 1.20581 1.03518 0.93371 1.05478 1.21985 0.96831 0.95361 0.94233 0.78302 0.89317 0.90314 0.92268 0.85855 0.86276 0.91153 0.90814 0.92317 0.92083 0.92067 0.88848 0.92410 0.92003 0.92031 0.92064 0.91736 0.92546 0.86204 0.83665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -4.97 19.03 29.55 0.56 -4.41 16 2 C -0.13 -2.88 8.52 -37.12 -0.32 -3.19 16 3 C 0.22 4.92 4.79 -6.83 -0.03 4.89 16 4 N -0.44 -11.45 2.54 -119.16 -0.30 -11.75 16 5 C -0.32 -9.04 8.84 -15.00 -0.13 -9.17 16 6 H 0.09 2.68 7.92 -52.49 -0.42 2.26 16 7 C 0.04 1.08 4.77 -17.45 -0.08 1.00 16 8 N -0.84 -22.95 10.40 55.50 0.58 -22.37 16 9 Si 0.91 20.63 29.61 -169.99 -5.03 15.60 16 10 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 11 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 13 C 0.50 13.17 7.08 -12.52 -0.09 13.09 16 14 O -0.57 -17.14 17.00 5.24 0.09 -17.05 16 15 C -0.16 -3.36 5.44 -104.95 -0.57 -3.93 16 16 C -0.03 -0.56 9.64 -39.21 -0.38 -0.93 16 17 C -0.21 -3.12 9.01 -39.45 -0.36 -3.48 16 18 C 0.22 3.15 6.54 -83.85 -0.55 2.61 16 19 N -0.62 -6.84 2.52 -164.17 -0.41 -7.25 16 20 C 0.12 1.08 5.31 -4.04 -0.02 1.06 16 21 C -0.18 -1.48 9.93 37.16 0.37 -1.12 16 22 C 0.14 1.27 3.19 -67.93 -0.22 1.06 16 23 C -0.16 -1.29 8.01 37.16 0.30 -0.99 16 24 C -0.16 -1.26 8.94 37.16 0.33 -0.93 16 25 C -0.21 -3.20 9.28 -39.45 -0.37 -3.57 16 26 C -0.07 -1.22 7.48 -39.21 -0.29 -1.51 16 27 H 0.20 3.41 7.80 -54.10 -0.42 2.99 16 28 H 0.09 2.02 7.54 -51.93 -0.39 1.62 16 29 H 0.08 1.55 5.14 -51.93 -0.27 1.28 16 30 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 31 H 0.12 2.26 8.06 -52.48 -0.42 1.83 16 32 H 0.12 1.52 6.09 -52.48 -0.32 1.20 16 33 H 0.07 0.53 6.38 -51.93 -0.33 0.20 16 34 H 0.07 0.69 6.44 -51.93 -0.33 0.36 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.49 5.57 -51.93 -0.29 0.20 16 37 H 0.06 0.61 7.89 -51.93 -0.41 0.20 16 38 H 0.09 0.92 5.28 -51.92 -0.27 0.64 16 39 H 0.06 0.41 6.69 -51.93 -0.35 0.07 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.39 6.83 -51.93 -0.35 0.04 16 45 H 0.12 1.58 5.72 -52.49 -0.30 1.28 16 46 H 0.15 2.82 3.26 -52.49 -0.17 2.65 16 LS Contribution 364.80 15.07 5.50 5.50 Total: -1.00 -32.87 364.80 -7.73 -40.60 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -6.30 Total: 6.27 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -1.84 Total: -9.53 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: -0.14 Total: -41.38 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: 0.09 Total: -17.05 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.87 -7.73 -40.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491012459.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.955 kcal (2) G-P(sol) polarization free energy of solvation -32.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds