Wall clock time and date at job start Tue Mar 31 2020 11:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47279 * 76.16661 * 3 2 1 5 5 C 1.36910 * 119.99894 * 262.78074 * 4 3 2 6 6 H 1.07994 * 119.99858 * 214.55087 * 5 4 3 7 7 C 1.39013 * 120.00145 * 34.54008 * 5 4 3 8 8 N 1.31392 * 119.99577 * 23.81855 * 7 5 4 9 9 Si 1.86793 * 120.00258 * 203.80788 * 7 5 4 10 10 H 1.48503 * 109.47059 * 60.00477 * 9 7 5 11 11 H 1.48501 * 109.47245 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47411 * 300.00878 * 9 7 5 13 13 C 1.34773 * 120.00125 * 82.77348 * 4 3 2 14 14 O 1.21638 * 120.00232 * 198.05945 * 13 4 3 15 15 C 1.47417 * 120.00183 * 18.05792 * 13 4 3 16 16 C 1.39848 * 120.07478 * 138.12579 * 15 13 4 17 17 C 1.37597 * 119.92537 * 180.02562 * 16 15 13 18 18 C 1.39229 * 120.07304 * 0.02562 * 17 16 15 19 19 N 1.39051 * 119.92186 * 179.97438 * 18 17 16 20 20 C 1.46495 * 120.00488 * 5.98640 * 19 18 17 21 21 C 1.53007 * 109.46922 * 270.00352 * 20 19 18 22 22 C 1.46504 * 119.99949 * 185.98567 * 19 18 17 23 23 C 1.53005 * 109.47156 * 116.38543 * 22 19 18 24 24 C 1.53000 * 109.47388 * 236.38884 * 22 19 18 25 25 C 1.39231 * 120.14994 * 0.24973 * 18 17 16 26 26 C 1.37599 * 120.07473 * 359.45324 * 25 18 17 27 27 H 4.40644 * 5.51373 * 179.97438 * 4 1 2 28 28 H 1.08997 * 109.47429 * 316.15900 * 3 2 1 29 29 H 1.09001 * 109.46751 * 196.16142 * 3 2 1 30 30 H 0.97000 * 119.99801 * 179.97438 * 8 7 5 31 31 H 1.08003 * 120.03942 * 0.02562 * 16 15 13 32 32 H 1.08003 * 119.95852 * 180.02562 * 17 16 15 33 33 H 1.09003 * 109.47582 * 150.00313 * 20 19 18 34 34 H 1.09001 * 109.46996 * 29.99455 * 20 19 18 35 35 H 1.09003 * 109.46985 * 179.97438 * 21 20 19 36 36 H 1.08996 * 109.46998 * 299.99532 * 21 20 19 37 37 H 1.08998 * 109.47453 * 59.99725 * 21 20 19 38 38 H 1.09009 * 109.47036 * 356.39029 * 22 19 18 39 39 H 1.08996 * 109.46660 * 67.55995 * 23 22 19 40 40 H 1.08993 * 109.46821 * 187.55675 * 23 22 19 41 41 H 1.08993 * 109.47267 * 307.56036 * 23 22 19 42 42 H 1.09001 * 109.47133 * 53.84008 * 24 22 19 43 43 H 1.08999 * 109.47058 * 173.83712 * 24 22 19 44 44 H 1.08994 * 109.47050 * 293.84202 * 24 22 19 45 45 H 1.07999 * 119.96172 * 179.72738 * 25 18 17 46 46 H 1.08000 * 120.03621 * 180.25010 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1346 -0.3294 -1.3411 5 6 3.5038 -1.6138 -1.6383 6 1 4.3222 -1.7966 -2.3189 7 6 2.8255 -2.6826 -1.0639 8 7 1.5932 -2.5250 -0.6361 9 14 3.6658 -4.3429 -0.9004 10 1 4.8847 -4.2006 -0.0642 11 1 2.7357 -5.3075 -0.2604 12 1 4.0449 -4.8406 -2.2472 13 6 3.2204 0.6314 -2.2824 14 8 3.3025 0.3264 -3.4571 15 6 3.2147 2.0519 -1.8885 16 6 4.0857 2.9543 -2.5072 17 6 4.0781 4.2794 -2.1367 18 6 3.2050 4.7221 -1.1467 19 7 3.2003 6.0618 -0.7744 20 6 4.0168 7.0297 -1.5111 21 6 5.4028 7.1208 -0.8693 22 6 2.3788 6.5055 0.3546 23 6 3.2849 7.0409 1.4652 24 6 1.4308 7.6134 -0.1088 25 6 2.3405 3.8253 -0.5247 26 6 2.3386 2.5000 -0.8947 27 1 -1.0499 -0.0002 -0.0001 28 1 3.0098 -0.7404 0.7118 29 1 3.0089 0.9879 0.2861 30 1 1.1197 -3.2709 -0.2356 31 1 4.7635 2.6115 -3.2749 32 1 4.7503 4.9768 -2.6145 33 1 3.5371 8.0080 -1.4801 34 1 4.1169 6.7066 -2.5473 35 1 6.0105 7.8406 -1.4177 36 1 5.3029 7.4438 0.1669 37 1 5.8826 6.1425 -0.9002 38 1 1.7976 5.6648 0.7335 39 1 3.7652 7.9603 1.1306 40 1 2.6880 7.2455 2.3539 41 1 4.0467 6.2984 1.7022 42 1 0.8616 7.2673 -0.9716 43 1 0.7459 7.8674 0.7002 44 1 2.0095 8.4948 -0.3851 45 1 1.6675 4.1712 0.2460 46 1 1.6649 1.8057 -0.4146 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491012459.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:00 Heat of formation + Delta-G solvation = 64.306425 kcal Electronic energy + Delta-G solvation = -26398.617521 eV Core-core repulsion = 22869.516478 eV Total energy + Delta-G solvation = -3529.101044 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.29612 -40.12393 -37.83794 -37.09196 -34.41157 -33.78631 -33.12322 -32.43453 -31.48217 -29.30529 -28.16024 -28.05060 -26.68171 -24.64268 -24.00264 -22.51548 -21.51665 -20.40700 -19.60943 -18.89584 -18.41468 -17.86629 -16.94887 -16.76676 -16.05247 -15.91253 -15.82457 -15.30795 -15.05883 -15.01878 -14.87588 -14.45768 -14.28091 -13.99681 -13.81837 -13.66338 -13.45713 -13.35199 -13.26628 -13.00225 -12.82577 -12.66412 -12.61368 -12.49367 -12.19008 -12.08835 -11.91382 -11.65320 -11.25384 -11.11197 -11.03392 -10.79122 -10.67759 -10.30634 -9.85230 -9.66017 -8.29418 -8.13343 -6.01129 0.34871 0.54357 1.41371 1.42088 1.52648 1.94549 2.15354 2.18348 2.27732 2.36825 2.91180 3.07985 3.30686 3.77855 3.85668 3.94479 4.08293 4.13517 4.20137 4.23975 4.38598 4.48975 4.53364 4.55244 4.59902 4.66057 4.72444 4.76671 4.81075 4.84964 4.93504 5.01981 5.05206 5.09010 5.17966 5.26856 5.34548 5.37313 5.42572 5.43049 5.48310 5.50247 5.70763 5.86118 6.16867 6.45569 6.51208 6.60382 7.11753 7.17752 7.38981 8.01213 8.68964 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.021711 B = 0.003452 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.337072 B = 8109.040394 C = 8723.230169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.166 4.166 3 C 0.225 3.775 4 N -0.447 5.447 5 C -0.361 4.361 6 H 0.067 0.933 7 C 0.008 3.992 8 N -0.860 5.860 9 Si 0.983 3.017 10 H -0.260 1.260 11 H -0.273 1.273 12 H -0.279 1.279 13 C 0.491 3.509 14 O -0.631 6.631 15 C -0.198 4.198 16 C -0.037 4.037 17 C -0.200 4.200 18 C 0.239 3.761 19 N -0.613 5.613 20 C 0.111 3.889 21 C -0.174 4.174 22 C 0.129 3.871 23 C -0.158 4.158 24 C -0.157 4.157 25 C -0.205 4.205 26 C -0.067 4.067 27 H 0.234 0.766 28 H 0.078 0.922 29 H 0.104 0.896 30 H 0.271 0.729 31 H 0.112 0.888 32 H 0.147 0.853 33 H 0.094 0.906 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.042 0.958 38 H 0.088 0.912 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.047 0.953 42 H 0.048 0.952 43 H 0.079 0.921 44 H 0.068 0.932 45 H 0.148 0.852 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.299 22.698 8.361 24.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.167 4.167 3 C 0.103 3.897 4 N -0.164 5.164 5 C -0.489 4.489 6 H 0.085 0.915 7 C -0.198 4.198 8 N -0.494 5.494 9 Si 0.806 3.194 10 H -0.185 1.185 11 H -0.198 1.198 12 H -0.205 1.205 13 C 0.283 3.717 14 O -0.519 6.519 15 C -0.203 4.203 16 C -0.057 4.057 17 C -0.222 4.222 18 C 0.134 3.866 19 N -0.322 5.322 20 C -0.011 4.011 21 C -0.232 4.232 22 C 0.026 3.974 23 C -0.216 4.216 24 C -0.215 4.215 25 C -0.227 4.227 26 C -0.086 4.086 27 H 0.251 0.749 28 H 0.097 0.903 29 H 0.121 0.879 30 H 0.081 0.919 31 H 0.130 0.870 32 H 0.164 0.836 33 H 0.112 0.888 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.061 0.939 38 H 0.106 0.894 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.098 0.902 44 H 0.086 0.914 45 H 0.165 0.835 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.202 22.629 7.967 24.020 hybrid contribution 0.093 -1.608 -0.410 1.662 sum 1.295 21.021 7.556 22.375 Atomic orbital electron populations 1.25124 0.96256 1.03166 0.99496 1.23179 0.94952 0.97809 1.00790 1.18584 0.84692 1.01006 0.85466 1.43556 1.56610 1.07489 1.08775 1.19404 1.15398 0.82127 1.31945 0.91471 1.26216 0.94598 1.02508 0.96481 1.70210 1.08433 1.33703 1.37057 0.85179 0.78621 0.77051 0.78533 1.18490 1.19785 1.20470 1.18992 0.80956 0.86672 0.85054 1.90538 1.57106 1.84499 1.19776 1.19738 1.04292 0.92751 1.03501 1.20896 0.95735 0.92817 0.96247 1.20654 1.03973 0.94909 1.02679 1.17956 0.91834 0.85006 0.91758 1.46786 1.48199 1.03272 1.33919 1.21550 0.91132 0.92896 0.95511 1.22346 0.96822 1.01910 1.02123 1.21283 0.91942 0.98093 0.86040 1.22247 0.99865 1.01297 0.98160 1.22141 0.99200 0.98195 1.02010 1.20769 1.03992 0.92070 1.05867 1.21849 0.96285 0.96725 0.93727 0.74904 0.90344 0.87858 0.91889 0.86974 0.83587 0.88809 0.90959 0.90497 0.91609 0.93865 0.89430 0.91312 0.90455 0.93422 0.93301 0.90164 0.91352 0.83509 0.84568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -9.14 19.03 74.32 1.41 -7.72 16 2 C -0.17 -7.59 8.52 31.13 0.27 -7.32 16 3 C 0.22 10.52 4.79 84.57 0.41 10.92 16 4 N -0.45 -24.86 2.54 -649.15 -1.65 -26.51 16 5 C -0.36 -21.54 8.84 84.09 0.74 -20.80 16 6 H 0.07 4.22 7.92 -2.91 -0.02 4.19 16 7 C 0.01 0.43 4.77 84.94 0.41 0.84 16 8 N -0.86 -47.53 10.40 21.68 0.23 -47.31 16 9 Si 0.98 43.27 29.61 68.60 2.03 45.30 16 10 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 11 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 12 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 13 C 0.49 27.53 7.08 86.66 0.61 28.14 16 14 O -0.63 -40.77 17.00 -4.15 -0.07 -40.84 16 15 C -0.20 -8.78 5.44 -20.08 -0.11 -8.89 16 16 C -0.04 -1.42 9.64 22.51 0.22 -1.20 16 17 C -0.20 -5.84 9.01 22.36 0.20 -5.64 16 18 C 0.24 6.35 6.54 38.47 0.25 6.60 16 19 N -0.61 -11.50 2.52 -673.32 -1.69 -13.20 16 20 C 0.11 1.60 5.31 86.38 0.46 2.06 16 21 C -0.17 -2.30 9.93 71.98 0.71 -1.59 16 22 C 0.13 1.91 3.19 44.99 0.14 2.05 16 23 C -0.16 -1.88 8.01 71.98 0.58 -1.30 16 24 C -0.16 -1.81 8.94 71.98 0.64 -1.16 16 25 C -0.20 -6.01 9.28 22.36 0.21 -5.80 16 26 C -0.07 -2.52 7.48 22.51 0.17 -2.35 16 27 H 0.23 7.49 7.80 -4.42 -0.03 7.46 16 28 H 0.08 3.72 7.54 -2.39 -0.02 3.71 16 29 H 0.10 4.21 5.14 -2.39 -0.01 4.19 16 30 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 31 H 0.11 4.41 8.06 -2.91 -0.02 4.39 16 32 H 0.15 3.42 6.09 -2.91 -0.02 3.40 16 33 H 0.09 0.98 6.38 -2.39 -0.02 0.97 16 34 H 0.07 1.11 6.44 -2.39 -0.02 1.09 16 35 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.06 0.82 5.57 -2.39 -0.01 0.81 16 37 H 0.04 0.74 7.89 -2.39 -0.02 0.72 16 38 H 0.09 1.42 5.28 -2.38 -0.01 1.40 16 39 H 0.07 0.68 6.69 -2.39 -0.02 0.67 16 40 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.05 0.72 8.10 -2.39 -0.02 0.70 16 42 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.07 0.63 6.83 -2.39 -0.02 0.62 16 45 H 0.15 3.47 5.72 -2.91 -0.02 3.45 16 46 H 0.14 5.38 3.26 -2.91 -0.01 5.37 16 Total: -1.00 -76.26 364.80 7.16 -69.10 By element: Atomic # 1 Polarization: 25.63 SS G_CDS: 0.99 Total: 26.62 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: 7.32 Total: -13.17 kcal Atomic # 7 Polarization: -83.90 SS G_CDS: -3.12 Total: -87.01 kcal Atomic # 8 Polarization: -40.77 SS G_CDS: -0.07 Total: -40.84 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -76.26 7.16 -69.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491012459.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.406 kcal (2) G-P(sol) polarization free energy of solvation -76.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds