Wall clock time and date at job start Tue Mar 31 2020 10:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 115.54707 * 2 1 4 4 C 1.52994 * 117.50299 * 214.32664 * 2 1 3 5 5 H 1.08998 * 117.50065 * 359.97438 * 4 2 1 6 6 C 1.50703 * 117.50005 * 145.00098 * 4 2 1 7 7 O 1.21282 * 120.00475 * 99.67747 * 6 4 2 8 8 N 1.34779 * 119.99871 * 279.67360 * 6 4 2 9 9 C 1.46501 * 119.99608 * 0.02562 * 8 6 4 10 10 C 1.50699 * 109.47394 * 89.99862 * 9 8 6 11 11 H 1.08004 * 120.00134 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00236 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99900 * 180.02562 * 12 10 9 14 14 Si 1.86804 * 119.99775 * 0.02562 * 12 10 9 15 15 H 1.48494 * 109.46920 * 269.99687 * 14 12 10 16 16 H 1.48492 * 109.47251 * 29.99735 * 14 12 10 17 17 H 1.48504 * 109.46931 * 149.99895 * 14 12 10 18 18 C 1.46492 * 120.00057 * 180.02562 * 8 6 4 19 19 C 1.50707 * 109.47287 * 269.99753 * 18 8 6 20 20 C 1.38668 * 120.41177 * 90.00143 * 19 18 8 21 21 C 1.38630 * 118.41980 * 180.02562 * 20 19 18 22 22 C 1.38231 * 119.16003 * 359.97438 * 21 20 19 23 23 N 1.31865 * 120.76222 * 0.02562 * 22 21 20 24 24 C 1.31885 * 121.72014 * 359.70430 * 23 22 21 25 25 C 1.52996 * 60.00371 * 252.48745 * 4 2 1 26 26 H 1.08999 * 117.50412 * 107.48237 * 25 4 2 27 27 C 1.52997 * 117.50272 * 252.51052 * 25 4 2 28 28 C 1.52994 * 117.50105 * 254.13432 * 27 25 4 29 29 C 1.52997 * 117.50179 * 185.50654 * 27 25 4 30 30 H 1.09001 * 109.46834 * 154.28014 * 1 2 3 31 31 H 1.08998 * 109.47282 * 274.27501 * 1 2 3 32 32 H 1.08997 * 109.47304 * 34.28366 * 1 2 3 33 33 H 1.09001 * 109.47361 * 329.99786 * 9 8 6 34 34 H 1.09007 * 109.46855 * 209.99803 * 9 8 6 35 35 H 0.97003 * 119.99531 * 180.02562 * 13 12 10 36 36 H 1.08992 * 109.47559 * 30.00330 * 18 8 6 37 37 H 1.09007 * 109.46770 * 150.00419 * 18 8 6 38 38 H 1.07999 * 120.79526 * 0.02572 * 20 19 18 39 39 H 1.07994 * 120.42479 * 180.02562 * 21 20 19 40 40 H 1.07996 * 119.61980 * 179.97438 * 22 21 20 41 41 H 1.08008 * 119.61113 * 180.31098 * 24 23 22 42 42 H 1.08999 * 115.54852 * 39.83653 * 27 25 4 43 43 H 1.08998 * 117.49985 * 359.97438 * 28 27 25 44 44 H 1.09003 * 117.50309 * 145.01684 * 28 27 25 45 45 H 1.09006 * 117.49948 * 214.97386 * 29 27 25 46 46 H 1.09000 * 117.50054 * 0.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1207 -0.7652 5 1 1.6114 -1.8583 -1.2684 6 6 3.5291 -0.7805 -1.4613 7 8 4.5891 -1.0619 -0.9435 8 7 3.5072 -0.1635 -2.6594 9 6 2.2268 0.1769 -3.2846 10 6 1.8060 1.5567 -2.8489 11 1 2.4297 2.1234 -2.1733 12 6 0.6247 2.0959 -3.3125 13 7 0.2577 3.3003 -2.9326 14 14 -0.4545 1.1155 -4.4803 15 1 -0.0600 1.4076 -5.8818 16 1 -0.2856 -0.3349 -4.2107 17 1 -1.8758 1.4946 -4.2769 18 6 4.7637 0.1668 -3.3363 19 6 5.2128 1.5433 -2.9183 20 6 6.0367 1.7080 -1.8152 21 6 6.4244 2.9926 -1.4672 22 6 5.9804 4.0591 -2.2264 23 7 5.1974 3.8648 -3.2694 24 6 4.8132 2.6565 -3.6325 25 6 2.2370 -1.1209 0.7647 26 1 1.6120 -1.8585 1.2682 27 6 3.5495 -0.7756 1.4709 28 6 4.3223 -1.9222 2.1258 29 6 3.5859 -0.9010 2.9953 30 1 -0.3633 -0.9259 -0.4460 31 1 -0.3634 0.0766 1.0248 32 1 -0.3634 0.8491 -0.5788 33 1 1.4703 -0.5466 -2.9807 34 1 2.3350 0.1556 -4.3691 35 1 -0.5735 3.6793 -3.2585 36 1 5.5261 -0.5627 -3.0634 37 1 4.6112 0.1465 -4.4155 38 1 6.3685 0.8557 -1.2407 39 1 7.0659 3.1582 -0.6143 40 1 6.2776 5.0631 -1.9617 41 1 4.1754 2.5363 -4.4958 42 1 4.1295 0.0285 1.0181 43 1 3.8954 -2.9225 2.0540 44 1 5.4110 -1.8727 2.1040 45 1 4.1902 -0.1797 3.5454 46 1 2.6748 -1.2300 3.4951 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528263339.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:25:03 Heat of formation + Delta-G solvation = 52.221420 kcal Electronic energy + Delta-G solvation = -27445.056595 eV Core-core repulsion = 23915.431506 eV Total energy + Delta-G solvation = -3529.625089 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.05494 -39.32689 -37.42736 -35.23044 -35.19081 -32.78315 -31.96482 -31.11574 -28.25495 -28.11580 -26.27602 -23.80600 -23.04798 -22.40622 -22.03870 -21.78023 -20.77908 -19.81552 -17.96892 -17.05014 -16.64839 -16.33438 -15.74232 -15.56408 -15.22465 -14.89984 -14.45652 -13.93785 -13.84386 -13.35953 -13.09190 -12.92873 -12.72082 -12.61635 -12.50805 -12.36877 -12.07429 -11.93304 -11.74472 -11.51147 -11.31741 -11.23569 -10.89072 -10.80685 -10.59479 -10.57890 -10.29634 -10.26156 -9.61408 -9.41315 -9.29868 -9.13506 -8.94195 -8.77563 -8.68244 -8.41881 -7.78263 -6.15380 -4.15219 1.59538 1.82099 3.17350 3.24697 3.26162 3.28054 3.66107 4.01391 4.29113 4.43432 4.57290 4.79603 4.96283 5.11132 5.15478 5.21800 5.23446 5.32933 5.37072 5.46608 5.55168 5.63202 5.64876 5.66062 5.68255 5.77026 5.87215 5.98619 6.04323 6.10585 6.13514 6.22237 6.28474 6.31266 6.37326 6.40525 6.45011 6.58540 6.66566 6.68685 6.80767 6.83601 6.90529 7.22615 7.29486 7.47688 8.09881 8.43254 8.53291 8.87093 8.94599 9.43651 10.96596 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.008946 B = 0.007475 C = 0.004934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3128.969003 B = 3744.910465 C = 5674.071067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.089 4.089 3 H 0.111 0.889 4 C -0.165 4.165 5 H 0.117 0.883 6 C 0.551 3.449 7 O -0.556 6.556 8 N -0.585 5.585 9 C 0.209 3.791 10 C -0.523 4.523 11 H 0.078 0.922 12 C 0.081 3.919 13 N -0.886 5.886 14 Si 0.861 3.139 15 H -0.276 1.276 16 H -0.266 1.266 17 H -0.285 1.285 18 C 0.165 3.835 19 C -0.145 4.145 20 C -0.058 4.058 21 C -0.188 4.188 22 C 0.093 3.907 23 N -0.486 5.486 24 C 0.145 3.855 25 C -0.107 4.107 26 H 0.101 0.899 27 C -0.092 4.092 28 C -0.165 4.165 29 C -0.192 4.192 30 H 0.047 0.953 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.035 0.965 34 H 0.025 0.975 35 H 0.264 0.736 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.132 0.868 39 H 0.124 0.876 40 H 0.146 0.854 41 H 0.154 0.846 42 H 0.105 0.895 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.164 -6.979 4.289 10.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.107 4.107 3 H 0.129 0.871 4 C -0.186 4.186 5 H 0.135 0.865 6 C 0.339 3.661 7 O -0.436 6.436 8 N -0.315 5.315 9 C 0.088 3.912 10 C -0.561 4.561 11 H 0.096 0.904 12 C -0.122 4.122 13 N -0.524 5.524 14 Si 0.688 3.312 15 H -0.202 1.202 16 H -0.190 1.190 17 H -0.211 1.211 18 C 0.041 3.959 19 C -0.148 4.148 20 C -0.085 4.085 21 C -0.208 4.208 22 C -0.064 4.064 23 N -0.194 5.194 24 C -0.013 4.013 25 C -0.126 4.126 26 H 0.119 0.881 27 C -0.111 4.111 28 C -0.202 4.202 29 C -0.229 4.229 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.053 0.947 34 H 0.043 0.957 35 H 0.074 0.926 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.150 0.850 39 H 0.142 0.858 40 H 0.163 0.837 41 H 0.171 0.829 42 H 0.123 0.877 43 H 0.104 0.896 44 H 0.106 0.894 45 H 0.106 0.894 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.263 -6.267 4.019 9.729 hybrid contribution -0.657 -0.998 -0.230 1.217 sum 5.606 -7.265 3.789 9.928 Atomic orbital electron populations 1.21325 0.92682 1.02540 1.00974 1.22238 0.95102 0.94230 0.99149 0.87086 1.22187 0.98128 1.04451 0.93790 0.86526 1.19546 0.89491 0.76655 0.80403 1.90584 1.32155 1.55744 1.65124 1.47952 1.07277 1.56631 1.19633 1.19850 0.80517 0.97692 0.93136 1.21217 1.06520 0.98629 1.29766 0.90391 1.24785 0.97148 0.94519 0.95782 1.69894 1.23202 1.15123 1.44155 0.87100 0.80769 0.81140 0.82198 1.20171 1.19029 1.21094 1.20108 0.87120 0.91844 0.96811 1.21177 0.98535 0.97747 0.97337 1.21513 0.94720 0.97344 0.94906 1.21999 1.03317 0.93890 1.01635 1.22641 0.93671 0.98772 0.91349 1.67696 1.10654 1.25277 1.15818 1.22636 0.93652 0.86687 0.98300 1.21943 0.97145 1.02250 0.91264 0.88053 1.21519 0.96248 1.00935 0.92356 1.22704 0.98650 0.94658 1.04171 1.22979 1.02554 1.03308 0.94080 0.93350 0.92950 0.90534 0.94702 0.95719 0.92592 0.89929 0.90036 0.85044 0.85751 0.83700 0.82853 0.87720 0.89552 0.89392 0.89429 0.89343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.95 10.19 37.16 0.38 -1.57 16 2 C -0.09 -1.57 5.06 -90.62 -0.46 -2.03 16 3 H 0.11 2.32 8.14 -51.93 -0.42 1.90 16 4 C -0.16 -2.87 4.10 -91.78 -0.38 -3.25 16 5 H 0.12 1.91 7.74 -51.93 -0.40 1.50 16 6 C 0.55 10.47 7.00 -10.98 -0.08 10.39 16 7 O -0.56 -11.02 13.66 5.56 0.08 -10.95 16 8 N -0.59 -11.07 2.44 -176.43 -0.43 -11.50 16 9 C 0.21 4.31 4.09 -5.19 -0.02 4.28 16 10 C -0.52 -12.62 8.65 -34.44 -0.30 -12.92 16 11 H 0.08 2.18 7.84 -52.48 -0.41 1.77 16 12 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 13 N -0.89 -24.74 13.96 55.43 0.77 -23.97 16 14 Si 0.86 19.13 27.47 -169.99 -4.67 14.46 16 15 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 16 H -0.27 -5.57 6.54 56.52 0.37 -5.20 16 17 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 18 C 0.16 2.77 5.60 -5.19 -0.03 2.74 16 19 C -0.14 -2.58 5.48 -104.48 -0.57 -3.15 16 20 C -0.06 -0.98 9.86 -39.28 -0.39 -1.37 16 21 C -0.19 -2.94 10.11 -39.44 -0.40 -3.34 16 22 C 0.09 1.55 11.18 -17.54 -0.20 1.36 16 23 N -0.49 -9.54 10.36 -13.25 -0.14 -9.67 16 24 C 0.14 2.78 10.11 -17.55 -0.18 2.60 16 25 C -0.11 -1.70 5.56 -90.62 -0.50 -2.20 16 26 H 0.10 1.43 8.14 -51.93 -0.42 1.00 16 27 C -0.09 -1.47 4.02 -90.63 -0.36 -1.83 16 28 C -0.16 -2.31 10.25 -26.73 -0.27 -2.59 16 29 C -0.19 -2.55 10.25 -26.73 -0.27 -2.82 16 30 H 0.05 0.72 7.90 -51.93 -0.41 0.31 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.04 0.72 5.74 -51.93 -0.30 0.42 16 34 H 0.02 0.50 7.32 -51.93 -0.38 0.12 16 35 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.08 1.32 7.37 -51.93 -0.38 0.94 16 37 H 0.08 1.21 7.84 -51.92 -0.41 0.81 16 38 H 0.13 2.17 7.69 -52.49 -0.40 1.77 16 39 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 40 H 0.15 1.98 8.06 -52.49 -0.42 1.56 16 41 H 0.15 2.94 8.06 -52.48 -0.42 2.52 16 42 H 0.10 1.93 7.09 -51.93 -0.37 1.57 16 43 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 44 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 379.78 15.07 5.72 5.72 Total: -1.00 -28.32 379.78 -10.07 -38.39 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -7.28 Total: 11.24 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -4.13 Total: -13.72 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: 0.21 Total: -45.14 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.08 Total: -10.95 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -4.67 Total: 14.46 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -28.32 -10.07 -38.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528263339.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.614 kcal (2) G-P(sol) polarization free energy of solvation -28.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds