Wall clock time and date at job start Tue Mar 31 2020 10:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 115.54707 * 2 1 4 4 C 1.52994 * 117.50299 * 214.32664 * 2 1 3 5 5 H 1.08998 * 117.50065 * 359.97438 * 4 2 1 6 6 C 1.50703 * 117.50005 * 145.00098 * 4 2 1 7 7 O 1.21282 * 120.00475 * 99.67747 * 6 4 2 8 8 N 1.34779 * 119.99871 * 279.67360 * 6 4 2 9 9 C 1.46501 * 119.99608 * 0.02562 * 8 6 4 10 10 C 1.50699 * 109.47394 * 89.99862 * 9 8 6 11 11 H 1.08004 * 120.00134 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00236 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99900 * 180.02562 * 12 10 9 14 14 Si 1.86804 * 119.99775 * 0.02562 * 12 10 9 15 15 H 1.48494 * 109.46920 * 269.99687 * 14 12 10 16 16 H 1.48492 * 109.47251 * 29.99735 * 14 12 10 17 17 H 1.48504 * 109.46931 * 149.99895 * 14 12 10 18 18 C 1.46492 * 120.00057 * 180.02562 * 8 6 4 19 19 C 1.50707 * 109.47287 * 269.99753 * 18 8 6 20 20 C 1.38668 * 120.41177 * 90.00143 * 19 18 8 21 21 C 1.38630 * 118.41980 * 180.02562 * 20 19 18 22 22 C 1.38231 * 119.16003 * 359.97438 * 21 20 19 23 23 N 1.31865 * 120.76222 * 0.02562 * 22 21 20 24 24 C 1.31885 * 121.72014 * 359.70430 * 23 22 21 25 25 C 1.52996 * 60.00371 * 252.48745 * 4 2 1 26 26 H 1.08999 * 117.50412 * 107.48237 * 25 4 2 27 27 C 1.52997 * 117.50272 * 252.51052 * 25 4 2 28 28 C 1.52994 * 117.50105 * 254.13432 * 27 25 4 29 29 C 1.52997 * 117.50179 * 185.50654 * 27 25 4 30 30 H 1.09001 * 109.46834 * 154.28014 * 1 2 3 31 31 H 1.08998 * 109.47282 * 274.27501 * 1 2 3 32 32 H 1.08997 * 109.47304 * 34.28366 * 1 2 3 33 33 H 1.09001 * 109.47361 * 329.99786 * 9 8 6 34 34 H 1.09007 * 109.46855 * 209.99803 * 9 8 6 35 35 H 0.97003 * 119.99531 * 180.02562 * 13 12 10 36 36 H 1.08992 * 109.47559 * 30.00330 * 18 8 6 37 37 H 1.09007 * 109.46770 * 150.00419 * 18 8 6 38 38 H 1.07999 * 120.79526 * 0.02572 * 20 19 18 39 39 H 1.07994 * 120.42479 * 180.02562 * 21 20 19 40 40 H 1.07996 * 119.61980 * 179.97438 * 22 21 20 41 41 H 1.08008 * 119.61113 * 180.31098 * 24 23 22 42 42 H 1.08999 * 115.54852 * 39.83653 * 27 25 4 43 43 H 1.08998 * 117.49985 * 359.97438 * 28 27 25 44 44 H 1.09003 * 117.50309 * 145.01684 * 28 27 25 45 45 H 1.09006 * 117.49948 * 214.97386 * 29 27 25 46 46 H 1.09000 * 117.50054 * 0.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1207 -0.7652 5 1 1.6114 -1.8583 -1.2684 6 6 3.5291 -0.7805 -1.4613 7 8 4.5891 -1.0619 -0.9435 8 7 3.5072 -0.1635 -2.6594 9 6 2.2268 0.1769 -3.2846 10 6 1.8060 1.5567 -2.8489 11 1 2.4297 2.1234 -2.1733 12 6 0.6247 2.0959 -3.3125 13 7 0.2577 3.3003 -2.9326 14 14 -0.4545 1.1155 -4.4803 15 1 -0.0600 1.4076 -5.8818 16 1 -0.2856 -0.3349 -4.2107 17 1 -1.8758 1.4946 -4.2769 18 6 4.7637 0.1668 -3.3363 19 6 5.2128 1.5433 -2.9183 20 6 6.0367 1.7080 -1.8152 21 6 6.4244 2.9926 -1.4672 22 6 5.9804 4.0591 -2.2264 23 7 5.1974 3.8648 -3.2694 24 6 4.8132 2.6565 -3.6325 25 6 2.2370 -1.1209 0.7647 26 1 1.6120 -1.8585 1.2682 27 6 3.5495 -0.7756 1.4709 28 6 4.3223 -1.9222 2.1258 29 6 3.5859 -0.9010 2.9953 30 1 -0.3633 -0.9259 -0.4460 31 1 -0.3634 0.0766 1.0248 32 1 -0.3634 0.8491 -0.5788 33 1 1.4703 -0.5466 -2.9807 34 1 2.3350 0.1556 -4.3691 35 1 -0.5735 3.6793 -3.2585 36 1 5.5261 -0.5627 -3.0634 37 1 4.6112 0.1465 -4.4155 38 1 6.3685 0.8557 -1.2407 39 1 7.0659 3.1582 -0.6143 40 1 6.2776 5.0631 -1.9617 41 1 4.1754 2.5363 -4.4958 42 1 4.1295 0.0285 1.0181 43 1 3.8954 -2.9225 2.0540 44 1 5.4110 -1.8727 2.1040 45 1 4.1902 -0.1797 3.5454 46 1 2.6748 -1.2300 3.4951 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528263339.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:25:03 Heat of formation + Delta-G solvation = 38.642779 kcal Electronic energy + Delta-G solvation = -27445.645409 eV Core-core repulsion = 23915.431506 eV Total energy + Delta-G solvation = -3530.213903 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.48423 -40.71667 -38.75909 -36.78545 -36.44451 -34.58892 -33.51526 -32.51699 -29.88078 -29.58960 -27.69887 -25.19826 -24.51010 -24.09979 -23.13734 -23.11245 -22.14971 -21.14237 -19.45067 -18.93301 -18.04942 -17.81119 -17.18610 -16.99755 -16.63537 -16.28613 -15.97845 -15.43387 -15.20445 -14.76192 -14.57571 -14.44086 -14.13376 -14.10274 -13.90996 -13.82729 -13.58393 -13.50003 -13.19108 -13.00058 -12.63643 -12.57443 -12.34144 -12.15819 -12.07525 -11.98109 -11.90912 -11.55723 -11.45591 -10.84279 -10.67885 -10.64011 -10.47614 -10.37511 -10.09205 -9.82956 -9.35324 -8.14331 -6.16753 0.21671 0.42569 1.41379 1.44447 1.51199 1.76991 2.26525 2.41818 2.71133 3.02804 3.20530 3.34893 3.52629 3.63510 3.76920 3.93841 3.96530 3.98870 4.08797 4.14726 4.19145 4.31494 4.39737 4.42676 4.44762 4.49013 4.60482 4.67274 4.75505 4.80788 4.84022 4.89932 4.92729 4.97021 5.01361 5.06599 5.19604 5.22571 5.33815 5.37976 5.41185 5.42870 5.53213 5.56948 5.74535 5.85760 6.31977 6.67624 6.87356 7.12577 7.37115 7.48177 9.01385 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.008946 B = 0.007475 C = 0.004934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3128.969003 B = 3744.910465 C = 5674.071067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.099 4.099 3 H 0.065 0.935 4 C -0.177 4.177 5 H 0.135 0.865 6 C 0.545 3.455 7 O -0.566 6.566 8 N -0.589 5.589 9 C 0.216 3.784 10 C -0.496 4.496 11 H 0.029 0.971 12 C 0.028 3.972 13 N -0.940 5.940 14 Si 0.921 3.079 15 H -0.273 1.273 16 H -0.236 1.236 17 H -0.293 1.293 18 C 0.162 3.838 19 C -0.150 4.150 20 C -0.067 4.067 21 C -0.179 4.179 22 C 0.082 3.918 23 N -0.519 5.519 24 C 0.124 3.876 25 C -0.080 4.080 26 H 0.132 0.868 27 C -0.121 4.121 28 C -0.156 4.156 29 C -0.173 4.173 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.039 0.961 33 H 0.045 0.955 34 H 0.040 0.960 35 H 0.260 0.740 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.136 0.864 39 H 0.160 0.840 40 H 0.175 0.825 41 H 0.143 0.857 42 H 0.069 0.931 43 H 0.100 0.900 44 H 0.085 0.915 45 H 0.093 0.907 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.256 -9.681 5.182 12.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.118 4.118 3 H 0.083 0.917 4 C -0.197 4.197 5 H 0.152 0.848 6 C 0.334 3.666 7 O -0.446 6.446 8 N -0.318 5.318 9 C 0.094 3.906 10 C -0.535 4.535 11 H 0.047 0.953 12 C -0.170 4.170 13 N -0.581 5.581 14 Si 0.745 3.255 15 H -0.199 1.199 16 H -0.159 1.159 17 H -0.219 1.219 18 C 0.039 3.961 19 C -0.153 4.153 20 C -0.093 4.093 21 C -0.199 4.199 22 C -0.075 4.075 23 N -0.227 5.227 24 C -0.033 4.033 25 C -0.099 4.099 26 H 0.149 0.851 27 C -0.140 4.140 28 C -0.193 4.193 29 C -0.209 4.209 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.111 0.889 37 H 0.118 0.882 38 H 0.153 0.847 39 H 0.178 0.822 40 H 0.192 0.808 41 H 0.160 0.840 42 H 0.087 0.913 43 H 0.118 0.882 44 H 0.104 0.896 45 H 0.112 0.888 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.383 -9.001 4.908 12.077 hybrid contribution -0.533 -0.063 -0.396 0.666 sum 5.851 -9.064 4.512 11.694 Atomic orbital electron populations 1.21246 0.91614 1.01915 1.01907 1.21995 0.95724 0.92683 1.01429 0.91655 1.22343 0.97570 1.04557 0.95274 0.84762 1.19891 0.90096 0.76377 0.80254 1.90567 1.32725 1.56172 1.65127 1.47960 1.07306 1.56636 1.19934 1.19688 0.81628 0.95437 0.93879 1.21155 1.05165 0.99630 1.27525 0.95309 1.25507 0.98689 0.95243 0.97609 1.70066 1.23909 1.17510 1.46618 0.86126 0.78237 0.81235 0.79871 1.19860 1.15942 1.21926 1.20283 0.86571 0.91436 0.97807 1.21263 0.98667 0.97817 0.97521 1.21689 0.94746 0.98220 0.94690 1.22366 1.02618 0.92930 1.01941 1.23184 0.92995 1.00631 0.90653 1.67638 1.11919 1.25722 1.17469 1.22558 0.94591 0.87356 0.98807 1.22025 0.96781 1.00835 0.90237 0.85067 1.21401 0.96651 1.01468 0.94438 1.22751 0.98549 0.94807 1.03216 1.23070 1.03127 1.02599 0.92141 0.91252 0.90827 0.94169 0.93666 0.94206 0.93042 0.88930 0.88178 0.84660 0.82248 0.80772 0.83979 0.91286 0.88184 0.89635 0.88812 0.87419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.52 10.19 71.98 0.73 -2.79 16 2 C -0.10 -3.52 5.06 -10.79 -0.05 -3.57 16 3 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 4 C -0.18 -5.93 4.10 -11.54 -0.05 -5.97 16 5 H 0.13 4.00 7.74 -2.39 -0.02 3.98 16 6 C 0.54 20.42 7.00 87.66 0.61 21.03 16 7 O -0.57 -22.10 13.66 -3.04 -0.04 -22.14 16 8 N -0.59 -22.07 2.44 -830.49 -2.03 -24.10 16 9 C 0.22 8.72 4.09 85.63 0.35 9.07 16 10 C -0.50 -24.66 8.65 25.60 0.22 -24.44 16 11 H 0.03 1.71 7.84 -2.91 -0.02 1.68 16 12 C 0.03 1.45 5.47 84.66 0.46 1.91 16 13 N -0.94 -54.99 13.96 21.45 0.30 -54.69 16 14 Si 0.92 39.23 27.47 68.60 1.88 41.12 16 15 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 16 H -0.24 -8.89 6.54 99.48 0.65 -8.24 16 17 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 18 C 0.16 5.40 5.60 85.64 0.48 5.88 16 19 C -0.15 -5.43 5.48 -19.77 -0.11 -5.54 16 20 C -0.07 -2.27 9.86 22.47 0.22 -2.04 16 21 C -0.18 -5.46 10.11 22.36 0.23 -5.23 16 22 C 0.08 2.75 11.18 84.69 0.95 3.69 16 23 N -0.52 -21.05 10.36 -195.84 -2.03 -23.08 16 24 C 0.12 4.96 10.11 84.67 0.86 5.81 16 25 C -0.08 -2.39 5.56 -10.79 -0.06 -2.45 16 26 H 0.13 3.14 8.14 -2.39 -0.02 3.12 16 27 C -0.12 -3.70 4.02 -10.80 -0.04 -3.75 16 28 C -0.16 -3.99 10.25 30.59 0.31 -3.68 16 29 C -0.17 -4.12 10.25 30.59 0.31 -3.80 16 30 H 0.07 1.91 7.90 -2.39 -0.02 1.89 16 31 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.05 1.77 5.74 -2.39 -0.01 1.76 16 34 H 0.04 1.53 7.32 -2.38 -0.02 1.51 16 35 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 36 H 0.09 2.89 7.37 -2.39 -0.02 2.87 16 37 H 0.10 2.90 7.84 -2.38 -0.02 2.89 16 38 H 0.14 4.45 7.69 -2.91 -0.02 4.42 16 39 H 0.16 3.66 8.06 -2.91 -0.02 3.64 16 40 H 0.18 4.59 8.06 -2.91 -0.02 4.57 16 41 H 0.14 5.79 8.06 -2.91 -0.02 5.77 16 42 H 0.07 2.61 7.09 -2.39 -0.02 2.59 16 43 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.09 2.21 8.14 -2.39 -0.02 2.20 16 45 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 46 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -64.68 379.78 4.41 -60.26 By element: Atomic # 1 Polarization: 37.60 SS G_CDS: 0.90 Total: 38.50 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: 5.43 Total: -15.86 kcal Atomic # 7 Polarization: -98.12 SS G_CDS: -3.76 Total: -101.87 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.04 Total: -22.14 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 1.88 Total: 41.12 kcal Total: -64.68 4.41 -60.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528263339.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.905 kcal (2) G-P(sol) polarization free energy of solvation -64.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds