Wall clock time and date at job start Tue Mar 31 2020 10:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46626 * 119.99699 * 2 1 3 5 5 C 1.50696 * 109.47750 * 294.99928 * 4 2 1 6 6 H 1.08002 * 119.99446 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00217 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00475 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 119.99810 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47374 * 59.99958 * 9 7 5 11 11 H 1.48503 * 109.46830 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47178 * 299.99632 * 9 7 5 13 13 C 1.52997 * 109.47164 * 239.99996 * 2 1 3 14 14 N 1.46900 * 109.47171 * 65.00001 * 13 2 1 15 15 C 1.48640 * 110.99683 * 52.57570 * 14 13 2 16 16 C 1.55146 * 103.33279 * 159.22005 * 15 14 13 17 17 C 1.53687 * 102.67988 * 323.32374 * 16 15 14 18 18 C 1.48170 * 110.99794 * 169.99733 * 14 13 2 19 19 C 1.50244 * 111.30547 * 143.16169 * 17 16 15 20 20 C 1.37700 * 133.51197 * 300.24758 * 19 17 16 21 21 C 1.38367 * 120.03188 * 179.97438 * 20 19 17 22 22 C 1.38305 * 119.84599 * 0.02562 * 21 20 19 23 23 C 1.37923 * 120.32394 * 0.06525 * 22 21 20 24 24 C 1.39173 * 105.86213 * 120.30248 * 19 17 16 25 25 N 1.39660 * 110.23556 * 0.10625 * 24 19 17 26 26 C 1.34701 * 112.15545 * 0.02562 * 25 24 19 27 27 O 1.21281 * 126.65887 * 179.91385 * 26 25 24 28 28 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 30 30 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 31 31 H 1.09002 * 109.47016 * 55.00506 * 4 2 1 32 32 H 1.09000 * 109.46709 * 175.00070 * 4 2 1 33 33 H 0.96993 * 120.00437 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.46992 * 185.00551 * 13 2 1 35 35 H 1.08998 * 109.47097 * 304.99739 * 13 2 1 36 36 H 1.09000 * 110.64213 * 277.68059 * 15 14 13 37 37 H 1.08995 * 110.64799 * 40.75827 * 15 14 13 38 38 H 1.09005 * 110.76176 * 205.02411 * 16 15 14 39 39 H 1.08998 * 110.93220 * 81.69628 * 16 15 14 40 40 H 1.08995 * 110.01159 * 333.62456 * 18 14 13 41 41 H 1.08997 * 110.00436 * 94.95539 * 18 14 13 42 42 H 1.08000 * 119.98425 * 359.96518 * 20 19 17 43 43 H 1.08003 * 120.07826 * 179.97438 * 21 20 19 44 44 H 1.07996 * 119.83344 * 180.09278 * 22 21 20 45 45 H 1.08000 * 119.89876 * 179.97438 * 23 22 21 46 46 H 0.96995 * 123.92120 * 180.02562 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 1 1.0800 0.9742 2.3757 7 6 1.9931 -0.4017 3.7283 8 7 2.6762 -1.5188 3.8513 9 14 1.4983 0.5628 5.2497 10 1 0.0183 0.6683 5.3093 11 1 1.9933 -0.1373 6.4622 12 1 2.0895 1.9235 5.1871 13 6 2.0401 -0.7212 -1.2492 14 7 1.6515 0.0374 -2.4456 15 6 2.0752 1.4580 -2.3364 16 6 2.0911 1.9409 -3.8107 17 6 2.6021 0.7035 -4.5655 18 6 2.3254 -0.4940 -3.6534 19 6 1.9219 0.5569 -5.8972 20 6 0.6079 0.4013 -6.2786 21 6 0.2845 0.2909 -7.6194 22 6 1.2837 0.3368 -8.5745 23 6 2.6013 0.4907 -8.1970 24 6 2.9358 0.6032 -6.8494 25 7 4.1760 0.7621 -6.2271 26 6 4.0668 0.8275 -4.8861 27 8 4.9732 0.9615 -4.0915 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6053 -1.7198 1.2952 32 1 3.1263 -0.7994 1.2057 33 1 2.9234 -1.8417 4.7318 34 1 3.1264 -0.7995 -1.2055 35 1 1.6055 -1.7198 -1.2951 36 1 1.3544 2.0301 -1.7523 37 1 3.0704 1.5295 -1.8978 38 1 2.7759 2.7798 -3.9351 39 1 1.0885 2.2098 -4.1432 40 1 3.2627 -0.9761 -3.3759 41 1 1.6750 -1.2072 -4.1599 42 1 -0.1705 0.3652 -5.5308 43 1 -0.7458 0.1684 -7.9193 44 1 1.0308 0.2522 -9.6210 45 1 3.3761 0.5253 -8.9486 46 1 5.0181 0.8189 -6.7050 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602622828.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:56 Heat of formation + Delta-G solvation = -1.117892 kcal Electronic energy + Delta-G solvation = -26195.539424 eV Core-core repulsion = 22663.601369 eV Total energy + Delta-G solvation = -3531.938055 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.21488 -38.85702 -38.31758 -35.93720 -35.25516 -32.83892 -31.67517 -30.31924 -29.65234 -28.57834 -26.82699 -25.73034 -23.96802 -22.93780 -22.77101 -21.88053 -21.10016 -19.87823 -18.59717 -18.01695 -17.25961 -16.43386 -16.34076 -15.72784 -15.51035 -15.04003 -14.71034 -14.46188 -14.27535 -14.18805 -13.87271 -13.47010 -13.38166 -12.97603 -12.72667 -12.41480 -12.10607 -11.93858 -11.88947 -11.66108 -11.46911 -11.34273 -11.14744 -11.05057 -10.93501 -10.81043 -10.70194 -10.26535 -10.15751 -10.13916 -9.61137 -9.19662 -9.11517 -8.91333 -8.34796 -8.28724 -8.16013 -5.93602 -3.94772 0.83641 1.00057 2.18855 2.66904 3.37095 3.41334 3.43734 3.45268 3.75557 4.01077 4.31158 4.48345 4.50862 4.57592 4.59263 4.73612 4.95397 5.08269 5.22214 5.28235 5.38247 5.42028 5.51252 5.64183 5.66765 5.69254 5.75847 5.79323 5.95270 6.05640 6.07404 6.10653 6.18619 6.19701 6.28831 6.44468 6.47810 6.55346 6.66895 6.69559 7.01801 7.03368 7.19594 7.25736 7.40503 7.69784 7.73612 7.89469 8.06548 8.50271 9.11315 9.68311 11.17974 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.027481 B = 0.002762 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.642361 B =10133.348117 C =10602.150111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.084 4.084 3 H 0.057 0.943 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.055 0.945 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.050 3.950 14 N -0.506 5.506 15 C 0.036 3.964 16 C -0.093 4.093 17 C -0.065 4.065 18 C 0.064 3.936 19 C -0.118 4.118 20 C -0.056 4.056 21 C -0.141 4.141 22 C -0.087 4.087 23 C -0.142 4.142 24 C 0.141 3.859 25 N -0.665 5.665 26 C 0.538 3.462 27 O -0.487 6.487 28 H 0.041 0.959 29 H 0.054 0.946 30 H 0.041 0.959 31 H 0.016 0.984 32 H 0.012 0.988 33 H 0.260 0.740 34 H 0.033 0.967 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.052 0.948 41 H 0.089 0.911 42 H 0.134 0.866 43 H 0.130 0.870 44 H 0.129 0.871 45 H 0.124 0.876 46 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.867 4.520 -27.837 28.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.103 4.103 3 H 0.076 0.924 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.078 4.078 14 N -0.230 5.230 15 C -0.092 4.092 16 C -0.131 4.131 17 C -0.069 4.069 18 C -0.065 4.065 19 C -0.121 4.121 20 C -0.075 4.075 21 C -0.160 4.160 22 C -0.105 4.105 23 C -0.163 4.163 24 C 0.044 3.956 25 N -0.308 5.308 26 C 0.325 3.675 27 O -0.359 6.359 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.034 0.966 32 H 0.031 0.969 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.108 0.892 40 H 0.070 0.930 41 H 0.107 0.893 42 H 0.152 0.848 43 H 0.148 0.852 44 H 0.147 0.853 45 H 0.142 0.858 46 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -2.862 4.416 -27.142 27.648 hybrid contribution 1.303 0.429 0.631 1.510 sum -1.559 4.845 -26.512 26.996 Atomic orbital electron populations 1.21605 0.95665 1.00696 1.00087 1.21282 0.95986 0.99161 0.93882 0.92428 1.19116 0.95951 0.95557 0.90380 1.21185 1.34599 1.08262 0.90980 0.92643 1.25018 0.95357 0.95098 0.99068 1.69955 1.39058 1.21228 1.23446 0.86698 0.78872 0.80117 0.82541 1.20273 1.21398 1.20329 1.22545 0.97959 0.97759 0.89501 1.65053 1.53439 1.02119 1.02387 1.23327 1.00597 0.90247 0.95007 1.22359 1.01887 0.94070 0.94796 1.20380 0.91702 1.00238 0.94624 1.22663 0.98577 0.94113 0.91150 1.19557 0.93583 1.06077 0.92928 1.20362 0.94244 0.96493 0.96354 1.21090 0.99683 1.02854 0.92344 1.20876 0.91687 0.98163 0.99807 1.20321 0.97389 1.06398 0.92229 1.18303 0.84757 0.98953 0.93594 1.43868 1.08303 1.70692 1.07961 1.20342 0.91167 0.74616 0.81352 1.90842 1.45872 1.47316 1.51847 0.94024 0.92716 0.94035 0.96553 0.96929 0.93061 0.94840 0.90942 0.88937 0.92713 0.90846 0.89241 0.93004 0.89304 0.84791 0.85249 0.85304 0.85814 0.75050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.37 8.89 37.16 0.33 -2.04 16 2 C -0.08 -1.75 2.03 -90.62 -0.18 -1.93 16 3 H 0.06 1.21 6.52 -51.93 -0.34 0.87 16 4 C 0.03 0.72 4.45 -27.89 -0.12 0.59 16 5 C -0.51 -14.51 8.41 -34.44 -0.29 -14.80 16 6 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -27.42 13.29 55.43 0.74 -26.68 16 9 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 C 0.05 0.90 4.42 -3.83 -0.02 0.88 16 14 N -0.51 -7.65 4.86 -230.60 -1.12 -8.77 16 15 C 0.04 0.52 5.09 -1.72 -0.01 0.51 16 16 C -0.09 -1.10 6.20 -25.24 -0.16 -1.25 16 17 C -0.07 -0.78 0.87 -156.77 -0.14 -0.92 16 18 C 0.06 0.86 6.06 -3.09 -0.02 0.84 16 19 C -0.12 -1.19 4.77 -104.69 -0.50 -1.69 16 20 C -0.06 -0.47 9.92 -39.73 -0.39 -0.87 16 21 C -0.14 -0.95 10.06 -39.51 -0.40 -1.35 16 22 C -0.09 -0.54 10.02 -39.67 -0.40 -0.94 16 23 C -0.14 -1.01 10.07 -39.30 -0.40 -1.40 16 24 C 0.14 1.30 7.12 -83.55 -0.59 0.71 16 25 N -0.66 -6.54 5.91 -9.85 -0.06 -6.60 16 26 C 0.54 7.07 7.04 -11.14 -0.08 6.99 16 27 O -0.49 -8.16 18.03 5.56 0.10 -8.06 16 28 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 1.13 6.95 -51.93 -0.36 0.76 16 30 H 0.04 0.70 7.75 -51.93 -0.40 0.30 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 34 H 0.03 0.64 7.82 -51.93 -0.41 0.24 16 35 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 36 H 0.09 1.32 7.59 -51.93 -0.39 0.93 16 37 H 0.05 0.90 7.99 -51.93 -0.42 0.49 16 38 H 0.07 0.85 7.84 -51.93 -0.41 0.44 16 39 H 0.09 0.93 7.82 -51.93 -0.41 0.52 16 40 H 0.05 0.78 7.16 -51.93 -0.37 0.40 16 41 H 0.09 1.10 7.72 -51.93 -0.40 0.69 16 42 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 43 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 44 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 45 H 0.12 0.62 8.06 -52.49 -0.42 0.19 16 46 H 0.41 3.06 8.96 -40.82 -0.37 2.70 16 LS Contribution 368.10 15.07 5.55 5.55 Total: -1.00 -32.69 368.10 -10.43 -43.12 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -7.16 Total: -0.36 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: -3.46 Total: -15.17 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: -0.44 Total: -42.05 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: 0.10 Total: -8.06 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.69 -10.43 -43.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602622828.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.001 kcal (2) G-P(sol) polarization free energy of solvation -32.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds