Wall clock time and date at job start Tue Mar 31 2020 10:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46626 * 119.99699 * 2 1 3 5 5 C 1.50696 * 109.47750 * 294.99928 * 4 2 1 6 6 H 1.08002 * 119.99446 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00217 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00475 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 119.99810 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47374 * 59.99958 * 9 7 5 11 11 H 1.48503 * 109.46830 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47178 * 299.99632 * 9 7 5 13 13 C 1.52997 * 109.47164 * 239.99996 * 2 1 3 14 14 N 1.46900 * 109.47171 * 65.00001 * 13 2 1 15 15 C 1.48640 * 110.99683 * 52.57570 * 14 13 2 16 16 C 1.55146 * 103.33279 * 159.22005 * 15 14 13 17 17 C 1.53687 * 102.67988 * 323.32374 * 16 15 14 18 18 C 1.48170 * 110.99794 * 169.99733 * 14 13 2 19 19 C 1.50244 * 111.30547 * 143.16169 * 17 16 15 20 20 C 1.37700 * 133.51197 * 300.24758 * 19 17 16 21 21 C 1.38367 * 120.03188 * 179.97438 * 20 19 17 22 22 C 1.38305 * 119.84599 * 0.02562 * 21 20 19 23 23 C 1.37923 * 120.32394 * 0.06525 * 22 21 20 24 24 C 1.39173 * 105.86213 * 120.30248 * 19 17 16 25 25 N 1.39660 * 110.23556 * 0.10625 * 24 19 17 26 26 C 1.34701 * 112.15545 * 0.02562 * 25 24 19 27 27 O 1.21281 * 126.65887 * 179.91385 * 26 25 24 28 28 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 30 30 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 31 31 H 1.09002 * 109.47016 * 55.00506 * 4 2 1 32 32 H 1.09000 * 109.46709 * 175.00070 * 4 2 1 33 33 H 0.96993 * 120.00437 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.46992 * 185.00551 * 13 2 1 35 35 H 1.08998 * 109.47097 * 304.99739 * 13 2 1 36 36 H 1.09000 * 110.64213 * 277.68059 * 15 14 13 37 37 H 1.08995 * 110.64799 * 40.75827 * 15 14 13 38 38 H 1.09005 * 110.76176 * 205.02411 * 16 15 14 39 39 H 1.08998 * 110.93220 * 81.69628 * 16 15 14 40 40 H 1.08995 * 110.01159 * 333.62456 * 18 14 13 41 41 H 1.08997 * 110.00436 * 94.95539 * 18 14 13 42 42 H 1.08000 * 119.98425 * 359.96518 * 20 19 17 43 43 H 1.08003 * 120.07826 * 179.97438 * 21 20 19 44 44 H 1.07996 * 119.83344 * 180.09278 * 22 21 20 45 45 H 1.08000 * 119.89876 * 179.97438 * 23 22 21 46 46 H 0.96995 * 123.92120 * 180.02562 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 1 1.0800 0.9742 2.3757 7 6 1.9931 -0.4017 3.7283 8 7 2.6762 -1.5188 3.8513 9 14 1.4983 0.5628 5.2497 10 1 0.0183 0.6683 5.3093 11 1 1.9933 -0.1373 6.4622 12 1 2.0895 1.9235 5.1871 13 6 2.0401 -0.7212 -1.2492 14 7 1.6515 0.0374 -2.4456 15 6 2.0752 1.4580 -2.3364 16 6 2.0911 1.9409 -3.8107 17 6 2.6021 0.7035 -4.5655 18 6 2.3254 -0.4940 -3.6534 19 6 1.9219 0.5569 -5.8972 20 6 0.6079 0.4013 -6.2786 21 6 0.2845 0.2909 -7.6194 22 6 1.2837 0.3368 -8.5745 23 6 2.6013 0.4907 -8.1970 24 6 2.9358 0.6032 -6.8494 25 7 4.1760 0.7621 -6.2271 26 6 4.0668 0.8275 -4.8861 27 8 4.9732 0.9615 -4.0915 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6053 -1.7198 1.2952 32 1 3.1263 -0.7994 1.2057 33 1 2.9234 -1.8417 4.7318 34 1 3.1264 -0.7995 -1.2055 35 1 1.6055 -1.7198 -1.2951 36 1 1.3544 2.0301 -1.7523 37 1 3.0704 1.5295 -1.8978 38 1 2.7759 2.7798 -3.9351 39 1 1.0885 2.2098 -4.1432 40 1 3.2627 -0.9761 -3.3759 41 1 1.6750 -1.2072 -4.1599 42 1 -0.1705 0.3652 -5.5308 43 1 -0.7458 0.1684 -7.9193 44 1 1.0308 0.2522 -9.6210 45 1 3.3761 0.5253 -8.9486 46 1 5.0181 0.8189 -6.7050 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602622828.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:56 Heat of formation + Delta-G solvation = -22.109919 kcal Electronic energy + Delta-G solvation = -26196.449707 eV Core-core repulsion = 22663.601369 eV Total energy + Delta-G solvation = -3532.848338 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.07840 -39.81095 -39.43161 -36.99490 -36.62477 -34.61838 -33.03506 -31.30119 -30.44151 -29.55375 -28.73567 -27.15061 -25.35428 -24.38678 -23.50647 -22.74490 -22.40031 -20.91251 -20.10720 -18.82264 -18.54790 -18.04724 -17.23808 -16.89416 -16.68928 -16.40473 -16.19074 -15.62143 -15.29717 -14.99050 -14.82280 -14.68888 -14.57976 -14.38519 -14.16183 -13.71145 -13.45819 -13.24546 -12.98871 -12.82613 -12.76545 -12.72557 -12.62902 -12.42809 -12.32019 -12.19664 -11.94587 -11.88565 -11.70674 -11.42221 -11.14476 -11.07655 -10.93453 -10.53480 -9.77612 -9.50168 -9.02945 -8.17617 -6.27289 0.14462 0.43060 1.28788 1.39441 1.42871 1.50364 1.88232 2.41643 2.78703 2.85601 3.13859 3.15593 3.17874 3.52385 3.62565 3.89795 4.11106 4.15756 4.21781 4.22063 4.32745 4.46447 4.48771 4.50859 4.59795 4.65075 4.70050 4.76133 4.83280 4.84589 4.92227 4.99430 5.03124 5.12818 5.16577 5.27912 5.45084 5.48803 5.51008 5.53418 5.60060 5.65325 5.72211 5.75394 5.86527 5.87396 5.93558 6.09345 6.29192 6.81759 6.88339 7.40970 8.94596 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.027481 B = 0.002762 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.642361 B =10133.348117 C =10602.150111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.074 4.074 3 H 0.054 0.946 4 C 0.033 3.967 5 C -0.528 4.528 6 H 0.063 0.937 7 C -0.004 4.004 8 N -0.937 5.937 9 Si 0.963 3.037 10 H -0.264 1.264 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.062 3.938 14 N -0.496 5.496 15 C 0.032 3.968 16 C -0.083 4.083 17 C -0.062 4.062 18 C 0.065 3.935 19 C -0.133 4.133 20 C -0.064 4.064 21 C -0.134 4.134 22 C -0.082 4.082 23 C -0.136 4.136 24 C 0.120 3.880 25 N -0.652 5.652 26 C 0.531 3.469 27 O -0.538 6.538 28 H 0.039 0.961 29 H 0.040 0.960 30 H 0.070 0.930 31 H -0.008 1.008 32 H -0.022 1.022 33 H 0.262 0.738 34 H 0.011 0.989 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.026 0.974 38 H 0.074 0.926 39 H 0.112 0.888 40 H 0.029 0.971 41 H 0.105 0.895 42 H 0.139 0.861 43 H 0.155 0.845 44 H 0.160 0.840 45 H 0.146 0.854 46 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.253 5.680 -30.574 31.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.093 4.093 3 H 0.073 0.927 4 C -0.005 4.005 5 C -0.566 4.566 6 H 0.081 0.919 7 C -0.201 4.201 8 N -0.578 5.578 9 Si 0.787 3.213 10 H -0.189 1.189 11 H -0.211 1.211 12 H -0.193 1.193 13 C -0.067 4.067 14 N -0.219 5.219 15 C -0.096 4.096 16 C -0.121 4.121 17 C -0.066 4.066 18 C -0.063 4.063 19 C -0.136 4.136 20 C -0.082 4.082 21 C -0.153 4.153 22 C -0.101 4.101 23 C -0.157 4.157 24 C 0.024 3.976 25 N -0.295 5.295 26 C 0.318 3.682 27 O -0.414 6.414 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.089 0.911 31 H 0.010 0.990 32 H -0.004 1.004 33 H 0.070 0.930 34 H 0.029 0.971 35 H 0.093 0.907 36 H 0.116 0.884 37 H 0.044 0.956 38 H 0.093 0.907 39 H 0.130 0.870 40 H 0.048 0.952 41 H 0.123 0.877 42 H 0.157 0.843 43 H 0.172 0.828 44 H 0.178 0.822 45 H 0.164 0.836 46 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -5.277 5.583 -29.946 30.916 hybrid contribution 2.030 0.024 1.330 2.426 sum -3.247 5.606 -28.617 29.341 Atomic orbital electron populations 1.21490 0.93842 1.00784 1.00786 1.21076 0.97298 0.98334 0.92573 0.92739 1.19007 0.93672 0.94892 0.92911 1.21591 1.34471 1.08614 0.91919 0.91864 1.25992 0.95233 0.96120 1.02780 1.70105 1.40309 1.23052 1.24346 0.85536 0.79103 0.78650 0.77989 1.18857 1.21071 1.19350 1.22273 0.96410 0.97981 0.89987 1.65051 1.53112 1.02199 1.01585 1.23351 0.99086 0.90024 0.97108 1.22321 1.03171 0.94039 0.92562 1.20265 0.91444 0.99243 0.95671 1.22676 0.97701 0.95175 0.90781 1.19474 0.94585 1.08027 0.91498 1.20526 0.93493 0.96699 0.97511 1.21447 1.01191 1.01078 0.91549 1.21306 0.90971 0.96414 1.01369 1.20671 0.98639 1.04843 0.91525 1.18526 0.83857 1.00677 0.94554 1.43701 1.09443 1.69433 1.06955 1.20546 0.91259 0.74195 0.82164 1.90808 1.47231 1.49998 1.53358 0.94223 0.94090 0.91082 0.98957 1.00389 0.92950 0.97119 0.90737 0.88412 0.95584 0.90725 0.86998 0.95225 0.87659 0.84345 0.82775 0.82196 0.83579 0.73863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.25 8.89 71.98 0.64 -3.61 16 2 C -0.07 -3.16 2.03 -10.79 -0.02 -3.18 16 3 H 0.05 2.35 6.52 -2.39 -0.02 2.34 16 4 C 0.03 1.80 4.45 29.85 0.13 1.93 16 5 C -0.53 -30.65 8.41 25.60 0.22 -30.43 16 6 H 0.06 3.50 7.06 -2.91 -0.02 3.48 16 7 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 8 N -0.94 -59.01 13.29 21.45 0.28 -58.73 16 9 Si 0.96 45.45 29.54 68.60 2.03 47.48 16 10 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 11 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 12 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 13 C 0.06 2.32 4.42 86.30 0.38 2.71 16 14 N -0.50 -15.07 4.86 -883.48 -4.30 -19.37 16 15 C 0.03 0.94 5.09 86.70 0.44 1.38 16 16 C -0.08 -1.90 6.20 31.56 0.20 -1.71 16 17 C -0.06 -1.48 0.87 -53.64 -0.05 -1.52 16 18 C 0.07 1.77 6.06 86.08 0.52 2.30 16 19 C -0.13 -2.42 4.77 -19.91 -0.09 -2.51 16 20 C -0.06 -0.89 9.92 22.17 0.22 -0.67 16 21 C -0.13 -1.25 10.06 22.32 0.22 -1.02 16 22 C -0.08 -0.65 10.02 22.21 0.22 -0.43 16 23 C -0.14 -1.45 10.07 22.45 0.23 -1.22 16 24 C 0.12 1.97 7.12 38.38 0.27 2.25 16 25 N -0.65 -12.48 5.91 -303.50 -1.79 -14.27 16 26 C 0.53 14.35 7.04 87.59 0.62 14.97 16 27 O -0.54 -19.22 18.03 -3.03 -0.05 -19.28 16 28 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.04 1.65 6.95 -2.39 -0.02 1.64 16 30 H 0.07 2.28 7.75 -2.39 -0.02 2.26 16 31 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 32 H -0.02 -1.36 8.14 -2.39 -0.02 -1.38 16 33 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 34 H 0.01 0.44 7.82 -2.39 -0.02 0.42 16 35 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 36 H 0.10 2.74 7.59 -2.39 -0.02 2.72 16 37 H 0.03 0.91 7.99 -2.39 -0.02 0.89 16 38 H 0.07 1.71 7.84 -2.38 -0.02 1.69 16 39 H 0.11 2.07 7.82 -2.39 -0.02 2.05 16 40 H 0.03 0.94 7.16 -2.39 -0.02 0.93 16 41 H 0.11 2.51 7.72 -2.39 -0.02 2.49 16 42 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 43 H 0.15 0.68 8.06 -2.91 -0.02 0.66 16 44 H 0.16 0.31 8.06 -2.91 -0.02 0.29 16 45 H 0.15 0.87 8.06 -2.91 -0.02 0.84 16 46 H 0.42 6.05 8.96 -92.71 -0.83 5.22 16 Total: -1.00 -74.04 368.10 0.93 -73.11 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: 0.15 Total: 11.61 kcal Atomic # 6 Polarization: -25.17 SS G_CDS: 4.61 Total: -20.56 kcal Atomic # 7 Polarization: -86.56 SS G_CDS: -5.80 Total: -92.37 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.05 Total: -19.28 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -74.04 0.93 -73.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602622828.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.002 kcal (2) G-P(sol) polarization free energy of solvation -74.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds