Wall clock time and date at job start Tue Mar 31 2020 10:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47502 * 2 1 4 4 C 1.52995 * 109.46718 * 120.00316 * 2 1 3 5 5 H 1.09000 * 109.47598 * 304.57184 * 4 2 1 6 6 C 1.53002 * 109.47737 * 64.58093 * 4 2 1 7 7 N 1.46504 * 109.46771 * 184.57985 * 4 2 1 8 8 C 1.46499 * 120.00377 * 304.03496 * 7 4 2 9 9 C 1.34780 * 119.99870 * 124.04085 * 7 4 2 10 10 O 1.21665 * 119.99926 * 5.41699 * 9 7 4 11 11 C 1.46892 * 119.99582 * 185.42313 * 9 7 4 12 12 C 1.36113 * 125.44118 * 353.55238 * 11 9 7 13 13 C 1.41702 * 107.75180 * 180.27969 * 12 11 9 14 14 C 1.40015 * 133.35284 * 179.77991 * 13 12 11 15 15 C 1.36577 * 119.83191 * 179.97438 * 14 13 12 16 16 C 1.38851 * 120.60011 * 359.95806 * 15 14 13 17 17 C 1.37844 * 120.63458 * 0.02562 * 16 15 14 18 18 C 1.39093 * 119.81230 * 359.97438 * 17 16 15 19 19 N 1.37830 * 133.16230 * 180.02562 * 18 17 16 20 20 C 1.36888 * 125.62405 * 359.97438 * 19 18 17 21 21 H 1.08007 * 119.99858 * 226.94397 * 20 19 18 22 22 C 1.39009 * 120.00165 * 46.93492 * 20 19 18 23 23 N 1.31348 * 119.99928 * 187.60458 * 22 20 19 24 24 Si 1.86801 * 119.99887 * 7.61152 * 22 20 19 25 25 H 1.48502 * 109.46864 * 264.06666 * 24 22 20 26 26 H 1.48502 * 109.47072 * 24.06444 * 24 22 20 27 27 H 1.48499 * 109.47187 * 144.06466 * 24 22 20 28 28 H 1.09001 * 109.46577 * 304.16173 * 1 2 3 29 29 H 1.09000 * 109.46616 * 64.15640 * 1 2 3 30 30 H 1.08994 * 109.47238 * 184.16284 * 1 2 3 31 31 H 1.09000 * 109.46665 * 240.00003 * 2 1 3 32 32 H 1.08993 * 109.47597 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47000 * 300.00131 * 3 2 1 34 34 H 1.09007 * 109.47164 * 59.99612 * 3 2 1 35 35 H 1.08999 * 109.46777 * 59.99456 * 6 4 2 36 36 H 1.08995 * 109.47161 * 179.97438 * 6 4 2 37 37 H 1.09002 * 109.46770 * 300.00090 * 6 4 2 38 38 H 1.08994 * 109.47471 * 239.39195 * 8 7 4 39 39 H 1.09003 * 109.46356 * 359.39361 * 8 7 4 40 40 H 1.09002 * 109.47295 * 119.38507 * 8 7 4 41 41 H 1.08006 * 126.12405 * 0.02562 * 12 11 9 42 42 H 1.08002 * 120.08834 * 359.97438 * 14 13 12 43 43 H 1.08005 * 119.70452 * 179.97438 * 15 14 13 44 44 H 1.08003 * 119.68743 * 180.02562 * 16 15 14 45 45 H 1.08000 * 120.09690 * 179.97438 * 17 16 15 46 46 H 0.97008 * 119.99879 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6113 -0.2570 2.1373 6 6 1.6262 -2.1933 1.1930 7 7 3.5008 -0.6265 1.3056 8 6 4.3098 -1.1014 0.1803 9 6 4.1006 -0.1026 2.3929 10 8 3.4373 0.2006 3.3668 11 6 5.5551 0.1026 2.4020 12 6 6.4161 -0.3074 1.4308 13 6 7.7228 0.0774 1.8213 14 6 8.9853 -0.0756 1.2355 15 6 10.0918 0.4153 1.8679 16 6 9.9773 1.0669 3.0887 17 6 8.7453 1.2300 3.6850 18 6 7.6040 0.7386 3.0600 19 7 6.2674 0.7465 3.3963 20 6 5.7339 1.2956 4.5311 21 1 5.0182 0.7371 5.1162 22 6 6.1135 2.5718 4.9305 23 7 5.7199 3.0405 6.0927 24 14 7.1830 3.6204 3.8142 25 1 8.6057 3.4778 4.2152 26 1 7.0180 3.1732 2.4077 27 1 6.7756 5.0435 3.9322 28 1 -0.3632 0.5771 0.8504 29 1 -0.3632 0.4480 -0.9249 30 1 -0.3633 -1.0249 0.0746 31 1 1.8933 -0.5138 -0.8900 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 2.0550 -2.6574 0.3048 36 1 1.9899 -2.7071 2.0827 37 1 0.5393 -2.2637 1.1509 38 1 4.9840 -1.8861 0.5231 39 1 3.6551 -1.4981 -0.5957 40 1 4.8918 -0.2731 -0.2239 41 1 6.1513 -0.8355 0.5267 42 1 9.0839 -0.5805 0.2858 43 1 11.0646 0.2958 1.4144 44 1 10.8620 1.4497 3.5757 45 1 8.6664 1.7379 4.6349 46 1 5.9845 3.9313 6.3712 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609162388.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:35 Heat of formation + Delta-G solvation = 45.481165 kcal Electronic energy + Delta-G solvation = -27338.761865 eV Core-core repulsion = 23808.844497 eV Total energy + Delta-G solvation = -3529.917368 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.90945 -39.37218 -36.91822 -35.94250 -34.33781 -33.22748 -31.41379 -30.30180 -29.23471 -28.22183 -27.12083 -26.74219 -24.79012 -23.92559 -22.44106 -21.12347 -20.31959 -19.43905 -19.02294 -17.97668 -16.41089 -16.11310 -15.65457 -15.44850 -15.23347 -14.53140 -14.44769 -14.14527 -13.89093 -13.52759 -13.33833 -13.16945 -12.98210 -12.96450 -12.61192 -12.50755 -12.38330 -12.18111 -12.12123 -12.08373 -11.41679 -11.36448 -11.16329 -10.94062 -10.86449 -10.81619 -10.70209 -10.48238 -10.39042 -10.11882 -9.83486 -9.40521 -9.08069 -8.65183 -8.27873 -7.32110 -6.94521 -6.73403 -4.46231 1.59422 2.48860 2.84282 3.07159 3.15246 3.21672 3.28066 3.96447 4.12765 4.36539 4.63001 4.67747 4.82831 4.91886 5.06717 5.22586 5.25657 5.40737 5.45394 5.49309 5.59262 5.66012 5.69360 5.70505 5.78030 5.83986 5.85319 5.91588 5.94606 6.02573 6.07117 6.11443 6.21182 6.27353 6.32805 6.42307 6.47617 6.56957 6.67499 6.81098 6.94132 7.20783 7.31249 7.34567 7.60378 7.63180 7.84397 7.95025 8.32199 8.76796 8.88774 9.12119 10.30781 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015041 B = 0.005212 C = 0.004373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.108092 B = 5370.976874 C = 6401.822993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.103 4.103 3 C -0.146 4.146 4 C 0.143 3.857 5 H 0.101 0.899 6 C -0.161 4.161 7 N -0.609 5.609 8 C 0.073 3.927 9 C 0.584 3.416 10 O -0.520 6.520 11 C -0.005 4.005 12 C -0.223 4.223 13 C -0.121 4.121 14 C -0.080 4.080 15 C -0.158 4.158 16 C -0.133 4.133 17 C -0.109 4.109 18 C 0.054 3.946 19 N -0.255 5.255 20 C -0.329 4.329 21 H 0.129 0.871 22 C 0.077 3.923 23 N -0.835 5.835 24 Si 0.876 3.124 25 H -0.250 1.250 26 H -0.253 1.253 27 H -0.285 1.285 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.050 0.950 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.157 0.843 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.112 0.888 45 H 0.120 0.880 46 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.910 -6.409 -13.540 15.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.204 4.204 4 C 0.040 3.960 5 H 0.119 0.881 6 C -0.219 4.219 7 N -0.344 5.344 8 C -0.069 4.069 9 C 0.374 3.626 10 O -0.395 6.395 11 C -0.122 4.122 12 C -0.249 4.249 13 C -0.126 4.126 14 C -0.099 4.099 15 C -0.177 4.177 16 C -0.153 4.153 17 C -0.128 4.128 18 C -0.059 4.059 19 N 0.083 4.917 20 C -0.457 4.457 21 H 0.146 0.854 22 C -0.135 4.135 23 N -0.465 5.465 24 Si 0.701 3.299 25 H -0.175 1.175 26 H -0.176 1.176 27 H -0.212 1.212 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.174 0.826 42 H 0.127 0.873 43 H 0.127 0.873 44 H 0.130 0.870 45 H 0.138 0.862 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.497 -5.914 -12.477 14.243 hybrid contribution 0.526 0.694 -0.345 0.937 sum -2.971 -5.220 -12.821 14.158 Atomic orbital electron populations 1.21864 0.94712 1.01877 1.01927 1.21464 0.95868 0.96942 0.97966 1.21797 1.01807 0.95315 1.01433 1.21055 0.79810 0.95710 0.99426 0.88136 1.22196 1.01386 0.96076 1.02238 1.47451 1.05857 1.63287 1.17772 1.22299 0.95575 0.99911 0.89165 1.17213 0.86073 0.77077 0.82197 1.90817 1.65628 1.49965 1.33096 1.19758 0.91416 1.09617 0.91413 1.21542 0.91194 1.10938 1.01196 1.18027 0.93741 1.04631 0.96202 1.20135 0.90929 1.00037 0.98789 1.20350 0.97583 1.03063 0.96740 1.20551 0.95763 1.02412 0.96584 1.20284 0.90746 1.01321 1.00461 1.18441 0.84945 1.04796 0.97736 1.40212 1.02309 1.35739 1.13435 1.19584 1.26760 1.00472 0.98838 0.85372 1.25526 0.95730 0.96495 0.95797 1.69620 1.40461 1.18329 1.18107 0.86920 0.81048 0.79169 0.82772 1.17467 1.17638 1.21218 0.92414 0.92657 0.92341 0.91113 0.92206 0.93082 0.92556 0.92546 0.92208 0.91529 0.91252 0.91484 0.90986 0.82595 0.87252 0.87329 0.87003 0.86193 0.90512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.04 37.16 0.34 -1.05 16 2 C -0.10 -1.16 2.19 -90.62 -0.20 -1.36 16 3 C -0.15 -1.92 8.98 37.15 0.33 -1.59 16 4 C 0.14 1.97 2.15 -67.93 -0.15 1.83 16 5 H 0.10 1.67 6.93 -51.93 -0.36 1.31 16 6 C -0.16 -1.79 8.99 37.16 0.33 -1.46 16 7 N -0.61 -9.75 1.85 -175.40 -0.32 -10.07 16 8 C 0.07 0.90 7.41 59.85 0.44 1.34 16 9 C 0.58 12.66 7.63 -12.76 -0.10 12.56 16 10 O -0.52 -13.26 14.49 5.22 0.08 -13.18 16 11 C -0.01 -0.12 6.72 -82.25 -0.55 -0.68 16 12 C -0.22 -4.40 8.77 -39.02 -0.34 -4.75 16 13 C -0.12 -2.59 6.16 -106.89 -0.66 -3.25 16 14 C -0.08 -1.45 10.06 -39.52 -0.40 -1.85 16 15 C -0.16 -2.76 9.97 -39.95 -0.40 -3.16 16 16 C -0.13 -2.55 10.02 -39.50 -0.40 -2.94 16 17 C -0.11 -2.47 6.67 -39.41 -0.26 -2.73 16 18 C 0.05 1.32 4.83 -83.84 -0.41 0.91 16 19 N -0.25 -6.65 2.42 -56.08 -0.14 -6.79 16 20 C -0.33 -9.41 9.13 -15.01 -0.14 -9.55 16 21 H 0.13 4.03 7.35 -52.48 -0.39 3.65 16 22 C 0.08 2.14 5.26 -17.47 -0.09 2.05 16 23 N -0.84 -23.78 13.95 55.50 0.77 -23.01 16 24 Si 0.88 21.58 23.63 -169.99 -4.02 17.56 16 25 H -0.25 -5.73 5.68 56.52 0.32 -5.41 16 26 H -0.25 -6.54 6.72 56.52 0.38 -6.16 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.49 6.36 -51.93 -0.33 0.15 16 31 H 0.07 0.70 7.00 -51.93 -0.36 0.34 16 32 H 0.06 0.89 7.24 -51.93 -0.38 0.51 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 35 H 0.06 0.54 7.27 -51.93 -0.38 0.16 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.62 6.46 -51.93 -0.34 0.29 16 38 H 0.07 0.84 6.56 -51.93 -0.34 0.50 16 39 H 0.07 0.62 6.10 -51.93 -0.32 0.31 16 40 H 0.07 0.91 6.37 -51.93 -0.33 0.57 16 41 H 0.16 2.39 3.86 -52.48 -0.20 2.19 16 42 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 43 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 44 H 0.11 1.82 8.06 -52.48 -0.42 1.40 16 45 H 0.12 2.82 5.59 -52.49 -0.29 2.53 16 46 H 0.28 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 350.14 15.07 5.28 5.28 Total: -1.00 -31.97 350.14 -7.62 -39.59 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -6.63 Total: 6.30 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: -2.64 Total: -15.68 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 0.31 Total: -39.86 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.08 Total: -13.18 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.02 Total: 17.56 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.97 -7.62 -39.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609162388.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.068 kcal (2) G-P(sol) polarization free energy of solvation -31.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds