Wall clock time and date at job start Tue Mar 31 2020 10:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47502 * 2 1 4 4 C 1.52995 * 109.46718 * 120.00316 * 2 1 3 5 5 H 1.09000 * 109.47598 * 304.57184 * 4 2 1 6 6 C 1.53002 * 109.47737 * 64.58093 * 4 2 1 7 7 N 1.46504 * 109.46771 * 184.57985 * 4 2 1 8 8 C 1.46499 * 120.00377 * 304.03496 * 7 4 2 9 9 C 1.34780 * 119.99870 * 124.04085 * 7 4 2 10 10 O 1.21665 * 119.99926 * 5.41699 * 9 7 4 11 11 C 1.46892 * 119.99582 * 185.42313 * 9 7 4 12 12 C 1.36113 * 125.44118 * 353.55238 * 11 9 7 13 13 C 1.41702 * 107.75180 * 180.27969 * 12 11 9 14 14 C 1.40015 * 133.35284 * 179.77991 * 13 12 11 15 15 C 1.36577 * 119.83191 * 179.97438 * 14 13 12 16 16 C 1.38851 * 120.60011 * 359.95806 * 15 14 13 17 17 C 1.37844 * 120.63458 * 0.02562 * 16 15 14 18 18 C 1.39093 * 119.81230 * 359.97438 * 17 16 15 19 19 N 1.37830 * 133.16230 * 180.02562 * 18 17 16 20 20 C 1.36888 * 125.62405 * 359.97438 * 19 18 17 21 21 H 1.08007 * 119.99858 * 226.94397 * 20 19 18 22 22 C 1.39009 * 120.00165 * 46.93492 * 20 19 18 23 23 N 1.31348 * 119.99928 * 187.60458 * 22 20 19 24 24 Si 1.86801 * 119.99887 * 7.61152 * 22 20 19 25 25 H 1.48502 * 109.46864 * 264.06666 * 24 22 20 26 26 H 1.48502 * 109.47072 * 24.06444 * 24 22 20 27 27 H 1.48499 * 109.47187 * 144.06466 * 24 22 20 28 28 H 1.09001 * 109.46577 * 304.16173 * 1 2 3 29 29 H 1.09000 * 109.46616 * 64.15640 * 1 2 3 30 30 H 1.08994 * 109.47238 * 184.16284 * 1 2 3 31 31 H 1.09000 * 109.46665 * 240.00003 * 2 1 3 32 32 H 1.08993 * 109.47597 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47000 * 300.00131 * 3 2 1 34 34 H 1.09007 * 109.47164 * 59.99612 * 3 2 1 35 35 H 1.08999 * 109.46777 * 59.99456 * 6 4 2 36 36 H 1.08995 * 109.47161 * 179.97438 * 6 4 2 37 37 H 1.09002 * 109.46770 * 300.00090 * 6 4 2 38 38 H 1.08994 * 109.47471 * 239.39195 * 8 7 4 39 39 H 1.09003 * 109.46356 * 359.39361 * 8 7 4 40 40 H 1.09002 * 109.47295 * 119.38507 * 8 7 4 41 41 H 1.08006 * 126.12405 * 0.02562 * 12 11 9 42 42 H 1.08002 * 120.08834 * 359.97438 * 14 13 12 43 43 H 1.08005 * 119.70452 * 179.97438 * 15 14 13 44 44 H 1.08003 * 119.68743 * 180.02562 * 16 15 14 45 45 H 1.08000 * 120.09690 * 179.97438 * 17 16 15 46 46 H 0.97008 * 119.99879 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6113 -0.2570 2.1373 6 6 1.6262 -2.1933 1.1930 7 7 3.5008 -0.6265 1.3056 8 6 4.3098 -1.1014 0.1803 9 6 4.1006 -0.1026 2.3929 10 8 3.4373 0.2006 3.3668 11 6 5.5551 0.1026 2.4020 12 6 6.4161 -0.3074 1.4308 13 6 7.7228 0.0774 1.8213 14 6 8.9853 -0.0756 1.2355 15 6 10.0918 0.4153 1.8679 16 6 9.9773 1.0669 3.0887 17 6 8.7453 1.2300 3.6850 18 6 7.6040 0.7386 3.0600 19 7 6.2674 0.7465 3.3963 20 6 5.7339 1.2956 4.5311 21 1 5.0182 0.7371 5.1162 22 6 6.1135 2.5718 4.9305 23 7 5.7199 3.0405 6.0927 24 14 7.1830 3.6204 3.8142 25 1 8.6057 3.4778 4.2152 26 1 7.0180 3.1732 2.4077 27 1 6.7756 5.0435 3.9322 28 1 -0.3632 0.5771 0.8504 29 1 -0.3632 0.4480 -0.9249 30 1 -0.3633 -1.0249 0.0746 31 1 1.8933 -0.5138 -0.8900 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 2.0550 -2.6574 0.3048 36 1 1.9899 -2.7071 2.0827 37 1 0.5393 -2.2637 1.1509 38 1 4.9840 -1.8861 0.5231 39 1 3.6551 -1.4981 -0.5957 40 1 4.8918 -0.2731 -0.2239 41 1 6.1513 -0.8355 0.5267 42 1 9.0839 -0.5805 0.2858 43 1 11.0646 0.2958 1.4144 44 1 10.8620 1.4497 3.5757 45 1 8.6664 1.7379 4.6349 46 1 5.9845 3.9313 6.3712 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609162388.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:34 Heat of formation + Delta-G solvation = 25.819019 kcal Electronic energy + Delta-G solvation = -27339.614480 eV Core-core repulsion = 23808.844497 eV Total energy + Delta-G solvation = -3530.769983 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.56935 -40.79668 -38.31336 -37.53762 -35.85504 -34.92586 -33.12172 -31.42981 -30.86288 -29.70169 -28.30053 -27.78129 -26.65740 -25.25926 -23.74607 -22.72871 -21.82581 -20.95156 -20.31199 -19.76977 -17.89453 -17.72403 -17.37661 -16.86925 -16.65189 -16.25395 -15.60538 -15.54909 -15.38679 -15.07190 -14.89020 -14.76211 -14.41185 -14.29320 -14.15255 -13.90419 -13.65851 -13.47340 -13.20085 -13.13371 -12.92164 -12.74512 -12.55714 -12.36429 -12.31054 -12.20571 -11.94188 -11.86922 -11.72793 -11.54473 -11.41017 -11.23648 -10.78586 -10.40193 -9.62091 -9.00301 -8.80827 -8.59769 -6.57716 -0.00393 0.91224 1.05953 1.10365 1.24285 1.36249 1.81105 1.96812 2.38103 2.71935 2.77804 3.14727 3.58276 3.81858 3.95807 4.03779 4.09182 4.26446 4.30566 4.38322 4.42983 4.48931 4.55591 4.59989 4.67798 4.70038 4.75800 4.80094 4.84331 4.91848 4.94298 4.98905 5.02570 5.09258 5.10062 5.14996 5.26039 5.27072 5.41093 5.43535 5.46085 5.67027 5.72568 5.79401 5.84295 6.05187 6.10869 6.40602 6.43393 6.81509 7.16862 7.30644 8.30727 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015041 B = 0.005212 C = 0.004373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.108092 B = 5370.976874 C = 6401.822993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 C -0.146 4.146 4 C 0.135 3.865 5 H 0.056 0.944 6 C -0.152 4.152 7 N -0.592 5.592 8 C 0.059 3.941 9 C 0.572 3.428 10 O -0.582 6.582 11 C -0.039 4.039 12 C -0.182 4.182 13 C -0.144 4.144 14 C -0.063 4.063 15 C -0.156 4.156 16 C -0.106 4.106 17 C -0.163 4.163 18 C 0.038 3.962 19 N -0.298 5.298 20 C -0.342 4.342 21 H 0.071 0.929 22 C 0.034 3.966 23 N -0.888 5.888 24 Si 0.940 3.060 25 H -0.223 1.223 26 H -0.271 1.271 27 H -0.283 1.283 28 H 0.038 0.962 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.040 0.960 33 H 0.075 0.925 34 H 0.022 0.978 35 H 0.086 0.914 36 H 0.036 0.964 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.112 0.888 40 H 0.076 0.924 41 H 0.209 0.791 42 H 0.159 0.841 43 H 0.159 0.841 44 H 0.144 0.856 45 H 0.096 0.904 46 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.370 -8.499 -19.520 21.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 C -0.203 4.203 4 C 0.032 3.968 5 H 0.075 0.925 6 C -0.210 4.210 7 N -0.325 5.325 8 C -0.082 4.082 9 C 0.363 3.637 10 O -0.462 6.462 11 C -0.153 4.153 12 C -0.208 4.208 13 C -0.149 4.149 14 C -0.081 4.081 15 C -0.175 4.175 16 C -0.126 4.126 17 C -0.183 4.183 18 C -0.075 4.075 19 N 0.036 4.964 20 C -0.470 4.470 21 H 0.089 0.911 22 C -0.173 4.173 23 N -0.522 5.522 24 Si 0.762 3.238 25 H -0.146 1.146 26 H -0.196 1.196 27 H -0.210 1.210 28 H 0.057 0.943 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.122 0.878 32 H 0.059 0.941 33 H 0.094 0.906 34 H 0.041 0.959 35 H 0.105 0.895 36 H 0.055 0.945 37 H 0.106 0.894 38 H 0.098 0.902 39 H 0.130 0.870 40 H 0.094 0.906 41 H 0.225 0.775 42 H 0.177 0.823 43 H 0.177 0.823 44 H 0.161 0.839 45 H 0.115 0.885 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.964 -8.046 -18.508 20.204 hybrid contribution -0.151 1.097 1.267 1.683 sum -1.115 -6.949 -17.241 18.622 Atomic orbital electron populations 1.21861 0.93101 1.02991 1.02157 1.21445 0.97102 0.95223 0.97359 1.21805 1.00495 0.97021 1.01026 1.21296 0.78295 0.97939 0.99260 0.92548 1.22142 1.02928 0.93379 1.02530 1.47544 1.07181 1.60895 1.16855 1.22622 0.96646 1.00304 0.88650 1.17480 0.85923 0.77262 0.83069 1.90785 1.66587 1.53044 1.35790 1.20385 0.92676 1.09679 0.92556 1.22243 0.89817 1.07729 1.01046 1.18581 0.95851 1.05032 0.95428 1.20710 0.89119 0.98267 1.00005 1.20927 0.99751 1.01243 0.95583 1.21103 0.95103 0.99643 0.96772 1.20380 0.92187 1.04882 1.00881 1.19026 0.84484 1.04937 0.99055 1.40189 1.03513 1.38724 1.13943 1.18972 1.26768 1.00740 1.00558 0.91115 1.26184 0.97054 0.97089 0.96926 1.69708 1.43387 1.19136 1.19921 0.86004 0.81015 0.77110 0.79626 1.14602 1.19568 1.20967 0.94265 0.90723 0.90479 0.87795 0.94132 0.90581 0.95857 0.89512 0.94472 0.89383 0.90216 0.86963 0.90576 0.77475 0.82303 0.82301 0.83862 0.88550 0.90112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.04 71.98 0.65 -1.74 16 2 C -0.09 -1.87 2.19 -10.79 -0.02 -1.90 16 3 C -0.15 -3.79 8.98 71.98 0.65 -3.14 16 4 C 0.13 3.69 2.15 44.99 0.10 3.79 16 5 H 0.06 2.06 6.93 -2.39 -0.02 2.04 16 6 C -0.15 -3.07 8.99 71.98 0.65 -2.42 16 7 N -0.59 -18.83 1.85 -827.06 -1.53 -20.36 16 8 C 0.06 1.20 7.41 127.77 0.95 2.15 16 9 C 0.57 26.48 7.63 86.51 0.66 27.14 16 10 O -0.58 -33.26 14.49 -4.24 -0.06 -33.32 16 11 C -0.04 -1.87 6.72 39.91 0.27 -1.60 16 12 C -0.18 -6.81 8.77 22.63 0.20 -6.61 16 13 C -0.14 -5.76 6.16 -21.34 -0.13 -5.89 16 14 C -0.06 -1.89 10.06 22.31 0.22 -1.67 16 15 C -0.16 -4.46 9.97 22.03 0.22 -4.24 16 16 C -0.11 -3.68 10.02 22.32 0.22 -3.46 16 17 C -0.16 -7.40 6.67 22.38 0.15 -7.25 16 18 C 0.04 1.85 4.83 39.06 0.19 2.03 16 19 N -0.30 -16.59 2.42 -331.34 -0.80 -17.39 16 20 C -0.34 -21.80 9.13 84.09 0.77 -21.03 16 21 H 0.07 5.13 7.35 -2.91 -0.02 5.11 16 22 C 0.03 2.07 5.26 84.95 0.45 2.51 16 23 N -0.89 -55.62 13.95 21.67 0.30 -55.32 16 24 Si 0.94 47.65 23.63 68.60 1.62 49.27 16 25 H -0.22 -10.13 5.68 99.48 0.57 -9.57 16 26 H -0.27 -14.29 6.72 99.48 0.67 -13.62 16 27 H -0.28 -13.82 7.11 99.48 0.71 -13.12 16 28 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16 30 H 0.08 1.01 6.36 -2.39 -0.02 1.00 16 31 H 0.10 1.49 7.00 -2.39 -0.02 1.48 16 32 H 0.04 1.18 7.24 -2.39 -0.02 1.17 16 33 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 34 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 35 H 0.09 1.24 7.27 -2.39 -0.02 1.22 16 36 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.09 1.41 6.46 -2.39 -0.02 1.40 16 38 H 0.08 1.54 6.56 -2.39 -0.02 1.52 16 39 H 0.11 1.37 6.10 -2.39 -0.01 1.35 16 40 H 0.08 1.57 6.37 -2.39 -0.02 1.55 16 41 H 0.21 5.31 3.86 -2.91 -0.01 5.30 16 42 H 0.16 3.29 8.06 -2.91 -0.02 3.26 16 43 H 0.16 3.08 8.06 -2.91 -0.02 3.05 16 44 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 45 H 0.10 4.72 5.59 -2.91 -0.02 4.71 16 46 H 0.29 16.42 8.31 -92.70 -0.77 15.65 16 Total: -1.00 -84.59 350.14 6.52 -78.07 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: 0.81 Total: 22.38 kcal Atomic # 6 Polarization: -29.52 SS G_CDS: 6.18 Total: -23.34 kcal Atomic # 7 Polarization: -91.03 SS G_CDS: -2.03 Total: -93.06 kcal Atomic # 8 Polarization: -33.26 SS G_CDS: -0.06 Total: -33.32 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 1.62 Total: 49.27 kcal Total: -84.59 6.52 -78.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609162388.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.893 kcal (2) G-P(sol) polarization free energy of solvation -84.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds