Wall clock time and date at job start Tue Mar 31 2020 10:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47349 * 2 1 4 4 C 1.50699 * 109.47277 * 239.99956 * 2 1 3 5 5 N 1.29952 * 126.28420 * 299.68869 * 4 2 1 6 6 O 1.21298 * 110.24942 * 179.84160 * 5 4 2 7 7 C 1.33642 * 109.80946 * 0.42003 * 6 5 4 8 8 C 1.50703 * 126.54781 * 179.71267 * 7 6 5 9 9 C 1.50695 * 109.47363 * 270.03125 * 8 7 6 10 10 C 1.37645 * 120.12584 * 264.72411 * 9 8 7 11 11 C 1.38617 * 120.24420 * 179.71830 * 10 9 8 12 12 C 1.38650 * 120.50104 * 0.56632 * 11 10 9 13 13 C 1.37596 * 120.25274 * 359.71780 * 12 11 10 14 14 C 1.40698 * 120.13007 * 85.00316 * 9 8 7 15 15 C 1.41397 * 120.24073 * 359.97438 * 14 9 8 16 16 H 1.08001 * 119.99725 * 329.90879 * 15 14 9 17 17 C 1.39946 * 119.99685 * 149.90852 * 15 14 9 18 18 N 1.30829 * 119.99456 * 161.94484 * 17 15 14 19 19 Si 1.86797 * 120.00413 * 341.94745 * 17 15 14 20 20 H 1.48500 * 109.46943 * 95.39145 * 19 17 15 21 21 H 1.48496 * 109.47296 * 215.39484 * 19 17 15 22 22 H 1.48507 * 109.46955 * 335.39602 * 19 17 15 23 23 N 1.31130 * 106.89888 * 359.74395 * 7 6 5 24 24 C 1.53004 * 109.47284 * 119.99934 * 2 1 3 25 25 C 1.52996 * 109.47252 * 59.99651 * 24 2 1 26 26 C 1.53001 * 109.47029 * 180.02562 * 24 2 1 27 27 C 1.53000 * 109.46881 * 299.99836 * 24 2 1 28 28 H 1.09003 * 109.46911 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47535 * 59.99890 * 1 2 3 30 30 H 1.09007 * 109.46747 * 299.99855 * 1 2 3 31 31 H 1.08997 * 109.46909 * 30.03314 * 8 7 6 32 32 H 1.09000 * 109.46719 * 150.03046 * 8 7 6 33 33 H 1.08002 * 119.87630 * 359.97438 * 10 9 8 34 34 H 1.08005 * 119.74825 * 180.25799 * 11 10 9 35 35 H 1.08003 * 119.87494 * 179.74396 * 12 11 10 36 36 H 1.07997 * 120.13019 * 179.97438 * 13 12 11 37 37 H 0.97001 * 119.99767 * 180.02562 * 18 17 15 38 38 H 1.09003 * 109.46689 * 60.00286 * 25 24 2 39 39 H 1.08997 * 109.47271 * 179.97438 * 25 24 2 40 40 H 1.08998 * 109.47255 * 300.00671 * 25 24 2 41 41 H 1.08994 * 109.47380 * 59.99602 * 26 24 2 42 42 H 1.08999 * 109.46850 * 179.97438 * 26 24 2 43 43 H 1.09003 * 109.47100 * 299.99829 * 26 24 2 44 44 H 1.08998 * 109.47491 * 60.00073 * 27 24 2 45 45 H 1.08999 * 109.47075 * 179.97438 * 27 24 2 46 46 H 1.09006 * 109.47266 * 299.99830 * 27 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 7 1.7996 -1.9475 -1.5531 6 8 2.3421 -2.2165 -2.6042 7 6 2.9997 -1.1465 -3.0612 8 6 3.8072 -1.0643 -4.3309 9 6 5.2361 -1.4468 -4.0432 10 6 6.1725 -0.4728 -3.7805 11 6 7.4863 -0.8222 -3.5098 12 6 7.8753 -2.1530 -3.5118 13 6 6.9575 -3.1431 -3.7776 14 6 5.6195 -2.8005 -4.0480 15 6 4.6674 -3.8094 -4.3218 16 1 3.6310 -3.6598 -4.0574 17 6 5.0681 -5.0016 -4.9355 18 7 4.2996 -6.0587 -4.8751 19 14 6.7000 -5.0836 -5.8407 20 1 7.7430 -5.6247 -4.9327 21 1 6.5655 -5.9704 -7.0243 22 1 7.0888 -3.7209 -6.2848 23 7 2.8086 -0.1823 -2.1933 24 6 2.0400 -0.7212 1.2493 25 6 1.5300 -2.1637 1.2494 26 6 3.5701 -0.7207 1.2495 27 6 1.5301 0.0001 2.4985 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 0.5139 0.8901 31 1 3.3904 -1.7469 -5.0714 32 1 3.7745 -0.0454 -4.7169 33 1 5.8816 0.5673 -3.7811 34 1 8.2136 -0.0516 -3.3006 35 1 8.9025 -2.4136 -3.3037 36 1 7.2627 -4.1790 -3.7791 37 1 4.5775 -6.8852 -5.3001 38 1 1.8934 -2.6775 0.3594 39 1 1.8938 -2.6776 2.1391 40 1 0.4400 -2.1637 1.2493 41 1 3.9330 0.3071 1.2497 42 1 3.9334 -1.2341 2.1397 43 1 3.9337 -1.2343 0.3595 44 1 0.4401 0.0001 2.4986 45 1 1.8930 -0.5140 3.3885 46 1 1.8934 1.0278 2.4985 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762144365.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:59 Heat of formation + Delta-G solvation = 63.078440 kcal Electronic energy + Delta-G solvation = -26876.699626 eV Core-core repulsion = 23347.545333 eV Total energy + Delta-G solvation = -3529.154293 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.93411 -38.63161 -38.12656 -35.03628 -33.68906 -33.33988 -31.21096 -30.43766 -30.18512 -27.42097 -27.34827 -26.77266 -24.93852 -24.57900 -22.85012 -21.67382 -21.15226 -19.83443 -18.30142 -17.52664 -17.34755 -16.80966 -15.77748 -15.30583 -14.79217 -14.58066 -14.34393 -14.19588 -14.00528 -13.80610 -13.75586 -12.83486 -12.70542 -12.51679 -12.32135 -12.23125 -12.08093 -11.91338 -11.78260 -11.70414 -11.55234 -11.32208 -11.17286 -11.14247 -10.88853 -10.84711 -10.69423 -10.52592 -10.47310 -10.29994 -10.24139 -9.81778 -9.74704 -9.21994 -9.09354 -7.73881 -7.65476 -7.00951 -4.58073 1.78328 2.42138 2.61918 2.82328 3.07699 3.16938 3.27962 3.58513 3.92860 4.01595 4.42729 4.46203 4.75975 4.85539 4.98252 5.20387 5.30510 5.35707 5.38261 5.59121 5.64047 5.72900 5.75912 5.77217 5.84089 5.84772 5.91031 5.94120 5.98562 6.03361 6.11299 6.12056 6.19222 6.21043 6.28288 6.34429 6.45229 6.49899 6.54828 6.63619 6.68613 6.85586 7.10814 7.31988 7.56277 7.65035 7.80292 8.03491 8.29515 8.55389 8.72597 8.81879 9.99888 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.016678 B = 0.004241 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.418940 B = 6600.378904 C = 7125.188968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.013 3.987 3 H 0.095 0.905 4 C 0.170 3.830 5 N -0.388 5.388 6 O 0.083 5.917 7 C 0.214 3.786 8 C 0.033 3.967 9 C -0.202 4.202 10 C -0.055 4.055 11 C -0.248 4.248 12 C -0.073 4.073 13 C -0.235 4.235 14 C 0.103 3.897 15 C -0.445 4.445 16 H 0.100 0.900 17 C 0.087 3.913 18 N -0.798 5.798 19 Si 0.909 3.091 20 H -0.271 1.271 21 H -0.291 1.291 22 H -0.242 1.242 23 N -0.500 5.500 24 C -0.061 4.061 25 C -0.153 4.153 26 C -0.140 4.140 27 C -0.139 4.139 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.286 0.714 38 H 0.077 0.923 39 H 0.051 0.949 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.053 0.947 44 H 0.059 0.941 45 H 0.057 0.943 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.210 8.927 6.920 12.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.007 4.007 3 H 0.113 0.887 4 C -0.103 4.103 5 N -0.098 5.098 6 O 0.026 5.974 7 C -0.005 4.005 8 C -0.006 4.006 9 C -0.205 4.205 10 C -0.073 4.073 11 C -0.267 4.267 12 C -0.092 4.092 13 C -0.254 4.254 14 C 0.100 3.900 15 C -0.472 4.472 16 H 0.117 0.883 17 C -0.134 4.134 18 N -0.421 5.421 19 Si 0.736 3.264 20 H -0.198 1.198 21 H -0.218 1.218 22 H -0.165 1.165 23 N -0.234 5.234 24 C -0.062 4.062 25 C -0.210 4.210 26 C -0.197 4.197 27 C -0.197 4.197 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.125 0.875 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.119 0.881 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.788 8.514 7.507 12.319 hybrid contribution 0.951 -0.375 -0.457 1.120 sum -3.837 8.139 7.050 11.431 Atomic orbital electron populations 1.21943 0.93497 1.03018 1.02082 1.19551 0.95822 0.98378 0.86915 0.88720 1.25502 0.97394 0.88904 0.98536 1.74533 1.18721 1.17049 0.99487 1.85387 1.47611 1.37741 1.26610 1.29141 0.92230 0.80572 0.98527 1.18890 0.91033 1.03391 0.87260 1.19163 0.92198 0.93357 1.15747 1.20530 0.93177 0.97100 0.96540 1.20366 0.95953 0.95174 1.15187 1.20656 0.97363 0.93394 0.97767 1.21031 0.94885 0.97558 1.11925 1.17556 0.91888 0.91594 0.88970 1.19609 0.97479 0.96890 1.33269 0.88254 1.26175 0.98526 0.94041 0.94628 1.69710 1.37955 1.01277 1.33123 0.86346 0.81264 0.80235 0.78604 1.19752 1.21798 1.16539 1.71854 1.18042 1.29971 1.03503 1.20532 0.95958 0.96166 0.93518 1.22123 1.01009 0.94984 1.02907 1.21854 0.94122 1.01829 1.01919 1.21903 1.01098 1.00061 0.96594 0.91503 0.92561 0.91268 0.87506 0.88530 0.88435 0.88822 0.88890 0.88144 0.90343 0.90433 0.93036 0.92504 0.92538 0.92567 0.92773 0.92222 0.92415 0.92566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.47 37.16 0.31 -1.39 16 2 C 0.01 0.18 2.23 -91.77 -0.20 -0.02 16 3 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 4 C 0.17 2.98 5.31 -156.38 -0.83 2.16 16 5 N -0.39 -7.56 9.51 30.90 0.29 -7.27 16 6 O 0.08 1.74 10.15 18.10 0.18 1.92 16 7 C 0.21 4.21 7.58 -13.06 -0.10 4.11 16 8 C 0.03 0.61 5.34 -29.04 -0.15 0.46 16 9 C -0.20 -4.32 5.17 -103.91 -0.54 -4.86 16 10 C -0.06 -1.11 9.66 -39.66 -0.38 -1.50 16 11 C -0.25 -5.00 10.05 -39.29 -0.39 -5.40 16 12 C -0.07 -1.56 10.02 -39.66 -0.40 -1.95 16 13 C -0.23 -5.49 7.17 -38.87 -0.28 -5.77 16 14 C 0.10 2.46 5.10 -106.82 -0.54 1.92 16 15 C -0.44 -11.22 8.56 -37.74 -0.32 -11.54 16 16 H 0.10 2.60 5.99 -52.49 -0.31 2.29 16 17 C 0.09 2.16 5.41 -17.34 -0.09 2.07 16 18 N -0.80 -20.46 13.93 55.55 0.77 -19.68 16 19 Si 0.91 19.95 24.52 -169.99 -4.17 15.78 16 20 H -0.27 -5.87 6.71 56.52 0.38 -5.49 16 21 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.24 -5.41 6.86 56.52 0.39 -5.02 16 23 N -0.50 -9.47 11.55 -9.87 -0.11 -9.59 16 24 C -0.06 -0.77 0.57 -154.51 -0.09 -0.86 16 25 C -0.15 -2.11 7.72 37.16 0.29 -1.82 16 26 C -0.14 -1.97 8.23 37.16 0.31 -1.67 16 27 C -0.14 -1.36 8.12 37.16 0.30 -1.05 16 28 H 0.07 0.83 6.43 -51.93 -0.33 0.50 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.63 6.43 -51.92 -0.33 0.30 16 31 H 0.11 1.95 7.13 -51.93 -0.37 1.58 16 32 H 0.10 1.51 8.05 -51.93 -0.42 1.10 16 33 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 34 H 0.09 1.66 8.06 -52.48 -0.42 1.24 16 35 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 36 H 0.10 2.36 4.76 -52.49 -0.25 2.11 16 37 H 0.29 6.67 8.30 -40.82 -0.34 6.33 16 38 H 0.08 1.32 5.50 -51.93 -0.29 1.03 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.71 6.43 -51.93 -0.33 0.38 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.05 0.95 7.22 -51.93 -0.37 0.57 16 44 H 0.06 0.52 6.43 -51.93 -0.33 0.18 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 358.88 15.07 5.41 5.41 Total: -1.00 -27.06 358.88 -7.49 -34.55 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -6.75 Total: 6.00 kcal Atomic # 6 Polarization: -24.00 SS G_CDS: -3.12 Total: -27.12 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.95 Total: -36.54 kcal Atomic # 8 Polarization: 1.74 SS G_CDS: 0.18 Total: 1.92 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -4.17 Total: 15.78 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -27.06 -7.49 -34.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762144365.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.626 kcal (2) G-P(sol) polarization free energy of solvation -27.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds