Wall clock time and date at job start Tue Mar 31 2020 10:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47349 * 2 1 4 4 C 1.50699 * 109.47277 * 239.99956 * 2 1 3 5 5 N 1.29952 * 126.28420 * 299.68869 * 4 2 1 6 6 O 1.21298 * 110.24942 * 179.84160 * 5 4 2 7 7 C 1.33642 * 109.80946 * 0.42003 * 6 5 4 8 8 C 1.50703 * 126.54781 * 179.71267 * 7 6 5 9 9 C 1.50695 * 109.47363 * 270.03125 * 8 7 6 10 10 C 1.37645 * 120.12584 * 264.72411 * 9 8 7 11 11 C 1.38617 * 120.24420 * 179.71830 * 10 9 8 12 12 C 1.38650 * 120.50104 * 0.56632 * 11 10 9 13 13 C 1.37596 * 120.25274 * 359.71780 * 12 11 10 14 14 C 1.40698 * 120.13007 * 85.00316 * 9 8 7 15 15 C 1.41397 * 120.24073 * 359.97438 * 14 9 8 16 16 H 1.08001 * 119.99725 * 329.90879 * 15 14 9 17 17 C 1.39946 * 119.99685 * 149.90852 * 15 14 9 18 18 N 1.30829 * 119.99456 * 161.94484 * 17 15 14 19 19 Si 1.86797 * 120.00413 * 341.94745 * 17 15 14 20 20 H 1.48500 * 109.46943 * 95.39145 * 19 17 15 21 21 H 1.48496 * 109.47296 * 215.39484 * 19 17 15 22 22 H 1.48507 * 109.46955 * 335.39602 * 19 17 15 23 23 N 1.31130 * 106.89888 * 359.74395 * 7 6 5 24 24 C 1.53004 * 109.47284 * 119.99934 * 2 1 3 25 25 C 1.52996 * 109.47252 * 59.99651 * 24 2 1 26 26 C 1.53001 * 109.47029 * 180.02562 * 24 2 1 27 27 C 1.53000 * 109.46881 * 299.99836 * 24 2 1 28 28 H 1.09003 * 109.46911 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47535 * 59.99890 * 1 2 3 30 30 H 1.09007 * 109.46747 * 299.99855 * 1 2 3 31 31 H 1.08997 * 109.46909 * 30.03314 * 8 7 6 32 32 H 1.09000 * 109.46719 * 150.03046 * 8 7 6 33 33 H 1.08002 * 119.87630 * 359.97438 * 10 9 8 34 34 H 1.08005 * 119.74825 * 180.25799 * 11 10 9 35 35 H 1.08003 * 119.87494 * 179.74396 * 12 11 10 36 36 H 1.07997 * 120.13019 * 179.97438 * 13 12 11 37 37 H 0.97001 * 119.99767 * 180.02562 * 18 17 15 38 38 H 1.09003 * 109.46689 * 60.00286 * 25 24 2 39 39 H 1.08997 * 109.47271 * 179.97438 * 25 24 2 40 40 H 1.08998 * 109.47255 * 300.00671 * 25 24 2 41 41 H 1.08994 * 109.47380 * 59.99602 * 26 24 2 42 42 H 1.08999 * 109.46850 * 179.97438 * 26 24 2 43 43 H 1.09003 * 109.47100 * 299.99829 * 26 24 2 44 44 H 1.08998 * 109.47491 * 60.00073 * 27 24 2 45 45 H 1.08999 * 109.47075 * 179.97438 * 27 24 2 46 46 H 1.09006 * 109.47266 * 299.99830 * 27 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 7 1.7996 -1.9475 -1.5531 6 8 2.3421 -2.2165 -2.6042 7 6 2.9997 -1.1465 -3.0612 8 6 3.8072 -1.0643 -4.3309 9 6 5.2361 -1.4468 -4.0432 10 6 6.1725 -0.4728 -3.7805 11 6 7.4863 -0.8222 -3.5098 12 6 7.8753 -2.1530 -3.5118 13 6 6.9575 -3.1431 -3.7776 14 6 5.6195 -2.8005 -4.0480 15 6 4.6674 -3.8094 -4.3218 16 1 3.6310 -3.6598 -4.0574 17 6 5.0681 -5.0016 -4.9355 18 7 4.2996 -6.0587 -4.8751 19 14 6.7000 -5.0836 -5.8407 20 1 7.7430 -5.6247 -4.9327 21 1 6.5655 -5.9704 -7.0243 22 1 7.0888 -3.7209 -6.2848 23 7 2.8086 -0.1823 -2.1933 24 6 2.0400 -0.7212 1.2493 25 6 1.5300 -2.1637 1.2494 26 6 3.5701 -0.7207 1.2495 27 6 1.5301 0.0001 2.4985 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 0.5139 0.8901 31 1 3.3904 -1.7469 -5.0714 32 1 3.7745 -0.0454 -4.7169 33 1 5.8816 0.5673 -3.7811 34 1 8.2136 -0.0516 -3.3006 35 1 8.9025 -2.4136 -3.3037 36 1 7.2627 -4.1790 -3.7791 37 1 4.5775 -6.8852 -5.3001 38 1 1.8934 -2.6775 0.3594 39 1 1.8938 -2.6776 2.1391 40 1 0.4400 -2.1637 1.2493 41 1 3.9330 0.3071 1.2497 42 1 3.9334 -1.2341 2.1397 43 1 3.9337 -1.2343 0.3595 44 1 0.4401 0.0001 2.4986 45 1 1.8930 -0.5140 3.3885 46 1 1.8934 1.0278 2.4985 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762144365.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:58 Heat of formation + Delta-G solvation = 48.437753 kcal Electronic energy + Delta-G solvation = -26877.334494 eV Core-core repulsion = 23347.545333 eV Total energy + Delta-G solvation = -3529.789161 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -46.41697 -39.86227 -39.68001 -36.49473 -35.50286 -34.83663 -32.55676 -32.15196 -31.52397 -28.68571 -28.41910 -28.07211 -26.70474 -25.73298 -24.28405 -23.31688 -22.62273 -21.44221 -19.47305 -19.26195 -18.92838 -18.22229 -17.49273 -16.39694 -16.29596 -16.11792 -15.81411 -15.57141 -15.41493 -15.23283 -14.77431 -14.60154 -14.13808 -13.89497 -13.80649 -13.52520 -13.25636 -13.18850 -12.99822 -12.92162 -12.77531 -12.72445 -12.70990 -12.59283 -12.40159 -12.22312 -12.03040 -11.91483 -11.72642 -11.61811 -11.54529 -11.43005 -11.36256 -10.99164 -10.61380 -9.44302 -9.40512 -8.86297 -6.46922 0.24977 0.74150 0.87978 1.28985 1.36445 1.42642 1.51051 2.08296 2.14044 2.63096 2.72811 3.17719 3.50803 3.69754 3.77309 3.90320 4.13520 4.21122 4.25071 4.33959 4.39512 4.44726 4.45775 4.56115 4.65939 4.70033 4.74905 4.75694 4.82946 4.90043 4.91063 4.92873 4.96818 5.01316 5.04080 5.07368 5.13614 5.15044 5.23328 5.28463 5.35520 5.45848 5.53454 5.62265 5.85480 5.92742 6.04484 6.27843 6.45285 6.75529 6.87989 7.30538 8.20357 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.016678 B = 0.004241 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.418940 B = 6600.378904 C = 7125.188968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.009 3.991 3 H 0.107 0.893 4 C 0.179 3.821 5 N -0.404 5.404 6 O 0.047 5.953 7 C 0.209 3.791 8 C 0.035 3.965 9 C -0.202 4.202 10 C -0.061 4.061 11 C -0.234 4.234 12 C -0.081 4.081 13 C -0.257 4.257 14 C 0.083 3.917 15 C -0.472 4.472 16 H 0.074 0.926 17 C 0.052 3.948 18 N -0.844 5.844 19 Si 0.960 3.040 20 H -0.268 1.268 21 H -0.281 1.281 22 H -0.248 1.248 23 N -0.504 5.504 24 C -0.057 4.057 25 C -0.152 4.152 26 C -0.137 4.137 27 C -0.133 4.133 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.122 0.878 36 H 0.092 0.908 37 H 0.292 0.708 38 H 0.039 0.961 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.009 0.991 44 H 0.074 0.926 45 H 0.065 0.935 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.352 12.138 8.381 15.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.011 4.011 3 H 0.125 0.875 4 C -0.094 4.094 5 N -0.119 5.119 6 O -0.004 6.004 7 C -0.010 4.010 8 C -0.004 4.004 9 C -0.204 4.204 10 C -0.079 4.079 11 C -0.253 4.253 12 C -0.100 4.100 13 C -0.276 4.276 14 C 0.081 3.919 15 C -0.501 4.501 16 H 0.092 0.908 17 C -0.164 4.164 18 N -0.469 5.469 19 Si 0.784 3.216 20 H -0.194 1.194 21 H -0.207 1.207 22 H -0.171 1.171 23 N -0.239 5.239 24 C -0.058 4.058 25 C -0.209 4.209 26 C -0.194 4.194 27 C -0.190 4.190 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.148 0.852 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.140 0.860 36 H 0.110 0.890 37 H 0.102 0.898 38 H 0.058 0.942 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.028 0.972 44 H 0.093 0.907 45 H 0.084 0.916 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.917 11.714 8.939 15.247 hybrid contribution 0.743 -1.155 -0.787 1.583 sum -3.174 10.559 8.153 13.712 Atomic orbital electron populations 1.21936 0.91639 1.02741 1.03665 1.19892 0.97315 0.98470 0.85386 0.87452 1.26313 0.95755 0.88360 0.98980 1.74584 1.19805 1.18187 0.99303 1.85374 1.48645 1.38786 1.27551 1.29324 0.92346 0.80477 0.98861 1.18977 0.89470 1.05105 0.86854 1.19501 0.93863 0.92799 1.14262 1.20927 0.93018 0.98336 0.95650 1.20874 0.96592 0.95570 1.12224 1.21023 0.98439 0.93467 0.97024 1.21160 0.95288 0.98019 1.13127 1.17758 0.92142 0.92513 0.89528 1.19573 0.96807 0.98271 1.35438 0.90806 1.26774 1.00971 0.93633 0.94978 1.69753 1.39807 1.02014 1.35365 0.85565 0.78260 0.79843 0.77898 1.19387 1.20746 1.17091 1.71866 1.18428 1.29816 1.03748 1.20548 0.94860 0.95678 0.94699 1.22102 1.01723 0.95699 1.01417 1.21844 0.95379 1.01966 1.00234 1.21865 1.02064 1.00366 0.94700 0.92698 0.92774 0.87901 0.88123 0.85164 0.85355 0.85363 0.86037 0.88989 0.89783 0.94223 0.92135 0.91353 0.91403 0.91479 0.97161 0.90667 0.91605 0.91153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.47 71.98 0.61 -2.35 16 2 C 0.01 0.24 2.23 -11.54 -0.03 0.21 16 3 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 4 C 0.18 6.32 5.31 138.46 0.73 7.05 16 5 N -0.40 -16.45 9.51 -60.33 -0.57 -17.02 16 6 O 0.05 2.08 10.15 74.84 0.76 2.84 16 7 C 0.21 8.41 7.58 88.38 0.67 9.08 16 8 C 0.03 1.28 5.34 29.10 0.16 1.44 16 9 C -0.20 -8.53 5.17 -19.41 -0.10 -8.63 16 10 C -0.06 -2.30 9.66 22.22 0.21 -2.08 16 11 C -0.23 -8.59 10.05 22.46 0.23 -8.36 16 12 C -0.08 -3.26 10.02 22.22 0.22 -3.03 16 13 C -0.26 -11.96 7.17 22.73 0.16 -11.80 16 14 C 0.08 4.06 5.10 -21.29 -0.11 3.95 16 15 C -0.47 -25.16 8.56 23.46 0.20 -24.96 16 16 H 0.07 4.20 5.99 -2.91 -0.02 4.18 16 17 C 0.05 2.72 5.41 85.26 0.46 3.18 16 18 N -0.84 -45.80 13.93 21.83 0.30 -45.49 16 19 Si 0.96 42.17 24.52 68.60 1.68 43.86 16 20 H -0.27 -11.45 6.71 99.48 0.67 -10.78 16 21 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 22 H -0.25 -10.91 6.86 99.48 0.68 -10.23 16 23 N -0.50 -18.96 11.55 -303.20 -3.50 -22.46 16 24 C -0.06 -1.34 0.57 -52.18 -0.03 -1.37 16 25 C -0.15 -4.11 7.72 71.98 0.56 -3.56 16 26 C -0.14 -3.71 8.23 71.98 0.59 -3.12 16 27 C -0.13 -2.08 8.12 71.98 0.58 -1.49 16 28 H 0.05 1.29 6.43 -2.39 -0.02 1.27 16 29 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.10 1.45 6.43 -2.38 -0.02 1.44 16 31 H 0.10 3.85 7.13 -2.39 -0.02 3.83 16 32 H 0.13 3.86 8.05 -2.39 -0.02 3.84 16 33 H 0.13 4.03 8.06 -2.91 -0.02 4.00 16 34 H 0.13 3.86 8.06 -2.91 -0.02 3.84 16 35 H 0.12 4.11 8.06 -2.91 -0.02 4.08 16 36 H 0.09 4.37 4.76 -2.91 -0.01 4.35 16 37 H 0.29 14.34 8.30 -92.71 -0.77 13.57 16 38 H 0.04 1.39 5.50 -2.39 -0.01 1.38 16 39 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.07 1.65 6.43 -2.39 -0.02 1.63 16 41 H 0.07 1.64 8.14 -2.39 -0.02 1.63 16 42 H 0.07 1.62 8.14 -2.39 -0.02 1.61 16 43 H 0.01 0.33 7.22 -2.39 -0.02 0.32 16 44 H 0.07 0.97 6.43 -2.39 -0.02 0.95 16 45 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 Total: -1.00 -61.99 358.88 4.72 -57.27 By element: Atomic # 1 Polarization: 25.94 SS G_CDS: 0.92 Total: 26.87 kcal Atomic # 6 Polarization: -50.98 SS G_CDS: 5.13 Total: -45.85 kcal Atomic # 7 Polarization: -81.21 SS G_CDS: -3.77 Total: -84.98 kcal Atomic # 8 Polarization: 2.08 SS G_CDS: 0.76 Total: 2.84 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 1.68 Total: 43.86 kcal Total: -61.99 4.72 -57.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762144365.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.707 kcal (2) G-P(sol) polarization free energy of solvation -61.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds