Wall clock time and date at job start Tue Mar 31 2020 10:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46861 * 2 1 4 4 C 1.50703 * 109.47298 * 120.00081 * 2 1 3 5 5 N 1.29940 * 126.28499 * 59.68714 * 4 2 1 6 6 O 1.21308 * 110.24758 * 179.84810 * 5 4 2 7 7 C 1.33638 * 109.81208 * 0.41949 * 6 5 4 8 8 C 1.50701 * 126.55312 * 179.71614 * 7 6 5 9 9 C 1.50698 * 109.47302 * 270.03307 * 8 7 6 10 10 C 1.37642 * 120.12369 * 264.72198 * 9 8 7 11 11 C 1.38614 * 120.24461 * 179.71861 * 10 9 8 12 12 C 1.38657 * 120.50176 * 0.56459 * 11 10 9 13 13 C 1.37599 * 120.24799 * 359.71374 * 12 11 10 14 14 C 1.40696 * 120.13169 * 84.99648 * 9 8 7 15 15 C 1.41399 * 120.23767 * 359.97438 * 14 9 8 16 16 H 1.07999 * 120.00499 * 25.58621 * 15 14 9 17 17 C 1.39947 * 119.99369 * 205.57916 * 15 14 9 18 18 N 1.30819 * 120.00247 * 15.14751 * 17 15 14 19 19 Si 1.86807 * 119.99810 * 195.14410 * 17 15 14 20 20 H 1.48497 * 109.47010 * 60.00215 * 19 17 15 21 21 H 1.48500 * 109.46802 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47092 * 300.00278 * 19 17 15 23 23 N 1.31134 * 106.89525 * 359.74604 * 7 6 5 24 24 C 1.53001 * 109.46947 * 240.00032 * 2 1 3 25 25 C 1.52995 * 109.47148 * 59.99952 * 24 2 1 26 26 C 1.52999 * 109.47294 * 299.99820 * 24 2 1 27 27 C 1.53006 * 109.46947 * 179.97438 * 24 2 1 28 28 H 1.09000 * 109.46861 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46862 * 300.00209 * 1 2 3 30 30 H 1.08998 * 109.47248 * 59.99927 * 1 2 3 31 31 H 1.08997 * 109.46542 * 30.03075 * 8 7 6 32 32 H 1.08997 * 109.46904 * 150.03093 * 8 7 6 33 33 H 1.08001 * 119.87544 * 359.97438 * 10 9 8 34 34 H 1.08004 * 119.74920 * 180.25631 * 11 10 9 35 35 H 1.07997 * 119.87740 * 179.74175 * 12 11 10 36 36 H 1.07998 * 120.12598 * 179.97438 * 13 12 11 37 37 H 0.96999 * 120.00438 * 179.97438 * 18 17 15 38 38 H 1.09005 * 109.47550 * 299.99978 * 25 24 2 39 39 H 1.09005 * 109.47099 * 60.00152 * 25 24 2 40 40 H 1.08993 * 109.47223 * 179.97438 * 25 24 2 41 41 H 1.08993 * 109.47211 * 179.97438 * 26 24 2 42 42 H 1.08997 * 109.46715 * 300.00409 * 26 24 2 43 43 H 1.09002 * 109.46914 * 59.99931 * 26 24 2 44 44 H 1.09000 * 109.46861 * 299.99968 * 27 24 2 45 45 H 1.08998 * 109.46724 * 60.00069 * 27 24 2 46 46 H 1.08993 * 109.46955 * 180.02562 * 27 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7904 -1.9441 1.5588 6 8 2.3410 -2.2159 2.6050 7 6 2.9992 -1.1462 3.0617 8 6 3.8056 -1.0634 4.3321 9 6 2.9140 -0.6256 5.4654 10 6 2.8464 0.7033 5.8174 11 6 2.0228 1.1096 6.8556 12 6 1.2674 0.1833 7.5584 13 6 1.3237 -1.1511 7.2276 14 6 2.1519 -1.5744 6.1716 15 6 2.2174 -2.9429 5.8222 16 1 3.0991 -3.3349 5.3370 17 6 1.1397 -3.7896 6.1055 18 7 -0.0266 -3.2833 6.4132 19 14 1.3667 -5.6428 6.0440 20 1 2.4073 -6.0468 7.0233 21 1 0.0835 -6.3100 6.3809 22 1 1.7895 -6.0447 4.6784 23 7 2.8088 -0.1822 2.1933 24 6 2.0400 -0.7213 -1.2493 25 6 1.5300 0.0000 -2.4985 26 6 1.5301 -2.1638 -1.2493 27 6 3.5701 -0.7207 -1.2496 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 4.2274 -2.0425 4.5590 32 1 4.6119 -0.3412 4.2042 33 1 3.4342 1.4328 5.2799 34 1 1.9727 2.1550 7.1223 35 1 0.6322 0.5105 8.3683 36 1 0.7348 -1.8710 7.7767 37 1 -0.7737 -3.8702 6.6092 38 1 0.4400 0.0000 -2.4985 39 1 1.8934 1.0277 -2.4985 40 1 1.8937 -0.5136 -3.3884 41 1 1.8930 -2.6774 -2.1395 42 1 1.8934 -2.6775 -0.3593 43 1 0.4400 -2.1637 -1.2492 44 1 3.9330 0.3071 -1.2498 45 1 3.9337 -1.2343 -0.3596 46 1 3.9334 -1.2341 -2.1398 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762144368.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:03 Heat of formation + Delta-G solvation = 62.684206 kcal Electronic energy + Delta-G solvation = -26808.274755 eV Core-core repulsion = 23279.103367 eV Total energy + Delta-G solvation = -3529.171388 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.83360 -38.62411 -37.84453 -34.94508 -33.71102 -33.22529 -31.13300 -30.11803 -29.53040 -27.46830 -27.34315 -26.63988 -25.07813 -24.52505 -22.78471 -21.37985 -20.95202 -19.77231 -18.29304 -17.38774 -17.22125 -16.69077 -15.50307 -15.27245 -14.74993 -14.59443 -14.26734 -14.10360 -13.81928 -13.75288 -13.69404 -12.71886 -12.62597 -12.38338 -12.18377 -12.12290 -11.98969 -11.77072 -11.74235 -11.58528 -11.32995 -11.18385 -11.12577 -11.09335 -11.02284 -10.80269 -10.71711 -10.51746 -10.49408 -10.40044 -10.20162 -9.66264 -9.54380 -9.23217 -8.99431 -7.49654 -7.43005 -6.80305 -4.44655 1.88886 2.67245 2.83591 2.98125 3.05763 3.08618 3.22152 3.69921 3.90760 4.08591 4.48638 4.60608 4.74727 4.87531 4.97815 5.26723 5.35314 5.40654 5.53544 5.56706 5.68189 5.68702 5.74519 5.83152 5.89859 5.91719 5.94205 5.99175 6.01306 6.07855 6.20071 6.21707 6.23604 6.24804 6.41550 6.45003 6.47654 6.54297 6.65838 6.73896 7.03344 7.18807 7.30501 7.52716 7.80715 7.93364 8.02949 8.20009 8.54425 8.80020 8.87862 8.90757 10.12992 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013523 B = 0.004587 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.062065 B = 6103.275460 C = 7221.890944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.014 3.986 3 H 0.094 0.906 4 C 0.169 3.831 5 N -0.391 5.391 6 O 0.085 5.915 7 C 0.221 3.779 8 C 0.038 3.962 9 C -0.218 4.218 10 C -0.068 4.068 11 C -0.244 4.244 12 C -0.101 4.101 13 C -0.161 4.161 14 C 0.125 3.875 15 C -0.455 4.455 16 H 0.081 0.919 17 C 0.080 3.920 18 N -0.790 5.790 19 Si 0.904 3.096 20 H -0.262 1.262 21 H -0.279 1.279 22 H -0.262 1.262 23 N -0.502 5.502 24 C -0.061 4.061 25 C -0.140 4.140 26 C -0.152 4.152 27 C -0.138 4.138 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.121 0.879 37 H 0.282 0.718 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.049 0.951 42 H 0.076 0.924 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.050 0.950 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.235 2.591 -11.283 12.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.006 4.006 3 H 0.112 0.888 4 C -0.104 4.104 5 N -0.101 5.101 6 O 0.029 5.971 7 C 0.002 3.998 8 C -0.001 4.001 9 C -0.221 4.221 10 C -0.086 4.086 11 C -0.264 4.264 12 C -0.120 4.120 13 C -0.181 4.181 14 C 0.122 3.878 15 C -0.484 4.484 16 H 0.099 0.901 17 C -0.138 4.138 18 N -0.415 5.415 19 Si 0.729 3.271 20 H -0.187 1.187 21 H -0.204 1.204 22 H -0.186 1.186 23 N -0.236 5.236 24 C -0.062 4.062 25 C -0.197 4.197 26 C -0.210 4.210 27 C -0.195 4.195 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.117 0.883 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.139 0.861 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.094 0.906 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.069 0.931 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.539 2.376 -11.879 12.377 hybrid contribution -0.155 -0.766 0.253 0.821 sum 2.384 1.610 -11.626 11.977 Atomic orbital electron populations 1.21948 0.93441 1.03084 1.02216 1.19529 0.95963 0.98297 0.86791 0.88763 1.25453 0.97360 0.89214 0.98359 1.74497 1.18073 1.17851 0.99696 1.85366 1.47169 1.37714 1.26883 1.29090 0.93111 0.80830 0.96781 1.18846 0.93894 1.03687 0.83705 1.19108 1.09119 0.93453 1.00400 1.20387 0.97650 0.94251 0.96359 1.20351 1.05583 0.97358 1.03072 1.20746 0.98357 0.94292 0.98593 1.21371 1.03360 0.94386 0.98958 1.17419 0.89046 0.92372 0.88942 1.19558 1.01553 0.92940 1.34387 0.90061 1.25874 0.94348 1.01420 0.92196 1.69794 1.00757 1.37940 1.32979 0.86406 0.78662 0.81961 0.80111 1.18699 1.20355 1.18644 1.71848 1.19131 1.29085 1.03559 1.20530 0.95744 0.96198 0.93712 1.21903 1.01299 1.00059 0.96454 1.22113 1.01320 0.94975 1.02543 1.21842 0.94418 1.01797 1.01479 0.91529 0.92318 0.91339 0.88341 0.88912 0.89084 0.89463 0.89444 0.86131 0.90735 0.92120 0.92543 0.92495 0.93180 0.90562 0.92391 0.92483 0.93072 0.92656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 8.47 37.16 0.31 -1.67 16 2 C 0.01 0.20 2.23 -91.77 -0.20 0.00 16 3 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 4 C 0.17 3.10 5.29 -156.38 -0.83 2.27 16 5 N -0.39 -7.84 9.54 30.90 0.29 -7.55 16 6 O 0.08 1.83 11.31 18.11 0.20 2.03 16 7 C 0.22 4.49 7.75 -13.05 -0.10 4.39 16 8 C 0.04 0.71 5.49 -29.04 -0.16 0.56 16 9 C -0.22 -4.91 5.17 -103.91 -0.54 -5.44 16 10 C -0.07 -1.48 9.66 -39.66 -0.38 -1.87 16 11 C -0.24 -5.39 10.05 -39.29 -0.39 -5.78 16 12 C -0.10 -2.34 10.02 -39.66 -0.40 -2.74 16 13 C -0.16 -4.06 8.68 -38.87 -0.34 -4.40 16 14 C 0.12 3.11 5.57 -106.83 -0.60 2.52 16 15 C -0.46 -11.19 8.47 -37.74 -0.32 -11.51 16 16 H 0.08 1.87 6.35 -52.49 -0.33 1.54 16 17 C 0.08 1.94 5.19 -17.34 -0.09 1.85 16 18 N -0.79 -19.97 10.87 55.55 0.60 -19.37 16 19 Si 0.90 18.31 29.59 -169.99 -5.03 13.28 16 20 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 21 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 22 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 23 N -0.50 -9.96 11.55 -9.87 -0.11 -10.07 16 24 C -0.06 -0.74 0.57 -154.51 -0.09 -0.83 16 25 C -0.14 -1.33 8.12 37.16 0.30 -1.03 16 26 C -0.15 -1.99 7.72 37.16 0.29 -1.70 16 27 C -0.14 -1.68 8.23 37.16 0.31 -1.38 16 28 H 0.07 0.94 6.43 -51.93 -0.33 0.61 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.71 6.43 -51.93 -0.33 0.38 16 31 H 0.10 1.76 6.48 -51.93 -0.34 1.42 16 32 H 0.09 1.52 8.05 -51.93 -0.42 1.10 16 33 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 34 H 0.09 1.72 8.06 -52.48 -0.42 1.29 16 35 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 36 H 0.12 3.13 6.14 -52.49 -0.32 2.81 16 37 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 38 H 0.06 0.54 6.43 -51.93 -0.33 0.21 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.08 1.20 5.52 -51.93 -0.29 0.91 16 43 H 0.06 0.73 6.43 -51.93 -0.33 0.40 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.05 0.74 7.22 -51.93 -0.37 0.36 16 46 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 365.82 15.07 5.51 5.51 Total: -1.00 -27.26 365.82 -8.52 -35.79 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -6.77 Total: 7.13 kcal Atomic # 6 Polarization: -23.52 SS G_CDS: -3.23 Total: -26.75 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.78 Total: -36.99 kcal Atomic # 8 Polarization: 1.83 SS G_CDS: 0.20 Total: 2.03 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.03 Total: 13.28 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -27.26 -8.52 -35.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762144368.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.473 kcal (2) G-P(sol) polarization free energy of solvation -27.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds