Wall clock time and date at job start Tue Mar 31 2020 10:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46861 * 2 1 4 4 C 1.50703 * 109.47298 * 120.00081 * 2 1 3 5 5 N 1.29940 * 126.28499 * 59.68714 * 4 2 1 6 6 O 1.21308 * 110.24758 * 179.84810 * 5 4 2 7 7 C 1.33638 * 109.81208 * 0.41949 * 6 5 4 8 8 C 1.50701 * 126.55312 * 179.71614 * 7 6 5 9 9 C 1.50698 * 109.47302 * 270.03307 * 8 7 6 10 10 C 1.37642 * 120.12369 * 264.72198 * 9 8 7 11 11 C 1.38614 * 120.24461 * 179.71861 * 10 9 8 12 12 C 1.38657 * 120.50176 * 0.56459 * 11 10 9 13 13 C 1.37599 * 120.24799 * 359.71374 * 12 11 10 14 14 C 1.40696 * 120.13169 * 84.99648 * 9 8 7 15 15 C 1.41399 * 120.23767 * 359.97438 * 14 9 8 16 16 H 1.07999 * 120.00499 * 25.58621 * 15 14 9 17 17 C 1.39947 * 119.99369 * 205.57916 * 15 14 9 18 18 N 1.30819 * 120.00247 * 15.14751 * 17 15 14 19 19 Si 1.86807 * 119.99810 * 195.14410 * 17 15 14 20 20 H 1.48497 * 109.47010 * 60.00215 * 19 17 15 21 21 H 1.48500 * 109.46802 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47092 * 300.00278 * 19 17 15 23 23 N 1.31134 * 106.89525 * 359.74604 * 7 6 5 24 24 C 1.53001 * 109.46947 * 240.00032 * 2 1 3 25 25 C 1.52995 * 109.47148 * 59.99952 * 24 2 1 26 26 C 1.52999 * 109.47294 * 299.99820 * 24 2 1 27 27 C 1.53006 * 109.46947 * 179.97438 * 24 2 1 28 28 H 1.09000 * 109.46861 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46862 * 300.00209 * 1 2 3 30 30 H 1.08998 * 109.47248 * 59.99927 * 1 2 3 31 31 H 1.08997 * 109.46542 * 30.03075 * 8 7 6 32 32 H 1.08997 * 109.46904 * 150.03093 * 8 7 6 33 33 H 1.08001 * 119.87544 * 359.97438 * 10 9 8 34 34 H 1.08004 * 119.74920 * 180.25631 * 11 10 9 35 35 H 1.07997 * 119.87740 * 179.74175 * 12 11 10 36 36 H 1.07998 * 120.12598 * 179.97438 * 13 12 11 37 37 H 0.96999 * 120.00438 * 179.97438 * 18 17 15 38 38 H 1.09005 * 109.47550 * 299.99978 * 25 24 2 39 39 H 1.09005 * 109.47099 * 60.00152 * 25 24 2 40 40 H 1.08993 * 109.47223 * 179.97438 * 25 24 2 41 41 H 1.08993 * 109.47211 * 179.97438 * 26 24 2 42 42 H 1.08997 * 109.46715 * 300.00409 * 26 24 2 43 43 H 1.09002 * 109.46914 * 59.99931 * 26 24 2 44 44 H 1.09000 * 109.46861 * 299.99968 * 27 24 2 45 45 H 1.08998 * 109.46724 * 60.00069 * 27 24 2 46 46 H 1.08993 * 109.46955 * 180.02562 * 27 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7904 -1.9441 1.5588 6 8 2.3410 -2.2159 2.6050 7 6 2.9992 -1.1462 3.0617 8 6 3.8056 -1.0634 4.3321 9 6 2.9140 -0.6256 5.4654 10 6 2.8464 0.7033 5.8174 11 6 2.0228 1.1096 6.8556 12 6 1.2674 0.1833 7.5584 13 6 1.3237 -1.1511 7.2276 14 6 2.1519 -1.5744 6.1716 15 6 2.2174 -2.9429 5.8222 16 1 3.0991 -3.3349 5.3370 17 6 1.1397 -3.7896 6.1055 18 7 -0.0266 -3.2833 6.4132 19 14 1.3667 -5.6428 6.0440 20 1 2.4073 -6.0468 7.0233 21 1 0.0835 -6.3100 6.3809 22 1 1.7895 -6.0447 4.6784 23 7 2.8088 -0.1822 2.1933 24 6 2.0400 -0.7213 -1.2493 25 6 1.5300 0.0000 -2.4985 26 6 1.5301 -2.1638 -1.2493 27 6 3.5701 -0.7207 -1.2496 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 4.2274 -2.0425 4.5590 32 1 4.6119 -0.3412 4.2042 33 1 3.4342 1.4328 5.2799 34 1 1.9727 2.1550 7.1223 35 1 0.6322 0.5105 8.3683 36 1 0.7348 -1.8710 7.7767 37 1 -0.7737 -3.8702 6.6092 38 1 0.4400 0.0000 -2.4985 39 1 1.8934 1.0277 -2.4985 40 1 1.8937 -0.5136 -3.3884 41 1 1.8930 -2.6774 -2.1395 42 1 1.8934 -2.6775 -0.3593 43 1 0.4400 -2.1637 -1.2492 44 1 3.9330 0.3071 -1.2498 45 1 3.9337 -1.2343 -0.3596 46 1 3.9334 -1.2341 -2.1398 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762144368.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:02 Heat of formation + Delta-G solvation = 49.595666 kcal Electronic energy + Delta-G solvation = -26808.842317 eV Core-core repulsion = 23279.103367 eV Total energy + Delta-G solvation = -3529.738950 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -46.35666 -39.71755 -39.58237 -36.43995 -35.51853 -34.75549 -32.48842 -31.53065 -31.32071 -28.59241 -28.38174 -28.03134 -26.87223 -25.72741 -24.25996 -22.94770 -22.60720 -21.41961 -19.47601 -19.06415 -18.86469 -18.13963 -17.27914 -16.43115 -16.21306 -15.96515 -15.68890 -15.49655 -15.40321 -15.16362 -14.75696 -14.38809 -13.94796 -13.82924 -13.54503 -13.33620 -13.23132 -12.98125 -12.95508 -12.86436 -12.75447 -12.73190 -12.64339 -12.54259 -12.45362 -12.21011 -12.14974 -11.90437 -11.69532 -11.57878 -11.43026 -11.32943 -11.24887 -11.03321 -10.55470 -9.30225 -9.25720 -8.61086 -6.31759 0.32049 0.93681 1.09896 1.38935 1.43424 1.48070 1.55483 2.15518 2.21226 2.73860 2.81109 3.21414 3.66690 3.73083 3.80926 3.93707 4.17111 4.30888 4.31447 4.38954 4.41116 4.48305 4.58294 4.66055 4.70778 4.73005 4.77840 4.81023 4.86089 4.92105 4.93662 4.99176 5.01388 5.05401 5.09756 5.15136 5.22670 5.26277 5.30361 5.35969 5.47361 5.50031 5.54631 5.73580 6.01076 6.11471 6.20378 6.38294 6.71360 6.95282 7.05570 7.36002 8.34351 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013523 B = 0.004587 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.062065 B = 6103.275460 C = 7221.890944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.010 3.990 3 H 0.104 0.896 4 C 0.176 3.824 5 N -0.405 5.405 6 O 0.055 5.945 7 C 0.215 3.785 8 C 0.040 3.960 9 C -0.218 4.218 10 C -0.074 4.074 11 C -0.246 4.246 12 C -0.109 4.109 13 C -0.192 4.192 14 C 0.097 3.903 15 C -0.476 4.476 16 H 0.088 0.912 17 C 0.040 3.960 18 N -0.827 5.827 19 Si 0.967 3.033 20 H -0.253 1.253 21 H -0.274 1.274 22 H -0.263 1.263 23 N -0.511 5.511 24 C -0.056 4.056 25 C -0.135 4.135 26 C -0.151 4.151 27 C -0.135 4.135 28 H 0.053 0.947 29 H 0.040 0.960 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.123 0.877 33 H 0.119 0.881 34 H 0.115 0.885 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.284 0.716 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.044 0.956 43 H 0.058 0.942 44 H 0.065 0.935 45 H 0.020 0.980 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.975 3.769 -13.328 14.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.010 4.010 3 H 0.122 0.878 4 C -0.097 4.097 5 N -0.119 5.119 6 O 0.004 5.996 7 C -0.004 4.004 8 C 0.001 3.999 9 C -0.221 4.221 10 C -0.092 4.092 11 C -0.265 4.265 12 C -0.128 4.128 13 C -0.212 4.212 14 C 0.095 3.905 15 C -0.505 4.505 16 H 0.105 0.895 17 C -0.175 4.175 18 N -0.453 5.453 19 Si 0.788 3.212 20 H -0.177 1.177 21 H -0.199 1.199 22 H -0.188 1.188 23 N -0.245 5.245 24 C -0.057 4.057 25 C -0.192 4.192 26 C -0.208 4.208 27 C -0.193 4.193 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.141 0.859 33 H 0.137 0.863 34 H 0.133 0.867 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.063 0.937 43 H 0.077 0.923 44 H 0.084 0.916 45 H 0.039 0.961 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.298 3.550 -13.893 14.714 hybrid contribution -0.364 -0.990 0.852 1.356 sum 2.934 2.560 -13.041 13.610 Atomic orbital electron populations 1.21942 0.92681 1.02542 1.03083 1.19859 0.96544 0.98569 0.86044 0.87787 1.26232 0.95862 0.88753 0.98820 1.74539 1.18889 1.18887 0.99607 1.85340 1.47969 1.38595 1.27726 1.29298 0.93085 0.80832 0.97227 1.18939 0.93789 1.04998 0.82140 1.19446 1.08446 0.93560 1.00645 1.20755 0.97651 0.94508 0.96334 1.20733 1.04670 0.98539 1.02524 1.21007 0.98725 0.93779 0.99247 1.21377 1.04621 0.95157 0.99998 1.17760 0.89933 0.93340 0.89510 1.19788 1.02093 0.93439 1.35201 0.89454 1.26641 0.93860 1.05433 0.91575 1.69875 1.01531 1.39361 1.34514 0.85462 0.78815 0.76883 0.79994 1.17677 1.19914 1.18765 1.71862 1.19677 1.29066 1.03928 1.20544 0.95652 0.95609 0.93915 1.21875 1.01801 1.00446 0.95070 1.22088 1.01362 0.95626 1.01770 1.21832 0.94473 1.02154 1.00815 0.92768 0.94090 0.87805 0.87635 0.85879 0.86344 0.86692 0.87655 0.88037 0.90517 0.91325 0.91340 0.91142 0.91513 0.93664 0.92297 0.91587 0.96092 0.90933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.64 8.47 71.98 0.61 -3.03 16 2 C 0.01 0.27 2.23 -11.54 -0.03 0.24 16 3 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 4 C 0.18 6.43 5.29 138.47 0.73 7.16 16 5 N -0.41 -16.57 9.54 -60.33 -0.58 -17.15 16 6 O 0.05 2.42 11.31 74.87 0.85 3.27 16 7 C 0.21 8.75 7.75 88.38 0.68 9.44 16 8 C 0.04 1.49 5.49 29.10 0.16 1.65 16 9 C -0.22 -9.75 5.17 -19.41 -0.10 -9.85 16 10 C -0.07 -3.12 9.66 22.22 0.21 -2.90 16 11 C -0.25 -10.45 10.05 22.46 0.23 -10.22 16 12 C -0.11 -5.04 10.02 22.22 0.22 -4.82 16 13 C -0.19 -9.96 8.68 22.73 0.20 -9.76 16 14 C 0.10 4.95 5.57 -21.29 -0.12 4.83 16 15 C -0.48 -24.04 8.47 23.46 0.20 -23.84 16 16 H 0.09 4.13 6.35 -2.91 -0.02 4.11 16 17 C 0.04 1.98 5.19 85.26 0.44 2.42 16 18 N -0.83 -43.48 10.87 21.83 0.24 -43.24 16 19 Si 0.97 38.38 29.59 68.60 2.03 40.41 16 20 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 21 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 22 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 23 N -0.51 -19.99 11.55 -303.21 -3.50 -23.49 16 24 C -0.06 -1.24 0.57 -52.18 -0.03 -1.27 16 25 C -0.13 -2.05 8.12 71.98 0.58 -1.47 16 26 C -0.15 -3.76 7.72 71.98 0.56 -3.20 16 27 C -0.14 -3.05 8.23 71.98 0.59 -2.46 16 28 H 0.05 1.50 6.43 -2.39 -0.02 1.48 16 29 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.10 1.85 6.43 -2.39 -0.02 1.83 16 31 H 0.11 3.76 6.48 -2.39 -0.02 3.74 16 32 H 0.12 3.79 8.05 -2.39 -0.02 3.77 16 33 H 0.12 4.27 8.06 -2.91 -0.02 4.25 16 34 H 0.12 4.20 8.06 -2.91 -0.02 4.18 16 35 H 0.11 4.34 8.06 -2.91 -0.02 4.31 16 36 H 0.10 5.55 6.14 -2.91 -0.02 5.54 16 37 H 0.28 13.81 8.30 -92.71 -0.77 13.04 16 38 H 0.07 0.95 6.43 -2.38 -0.02 0.93 16 39 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 40 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.04 1.42 5.52 -2.39 -0.01 1.41 16 43 H 0.06 1.42 6.43 -2.39 -0.02 1.41 16 44 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.02 0.58 7.22 -2.39 -0.02 0.56 16 46 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -60.71 365.82 5.16 -55.54 By element: Atomic # 1 Polarization: 30.76 SS G_CDS: 0.98 Total: 31.74 kcal Atomic # 6 Polarization: -52.23 SS G_CDS: 5.15 Total: -47.09 kcal Atomic # 7 Polarization: -80.04 SS G_CDS: -3.84 Total: -83.88 kcal Atomic # 8 Polarization: 2.42 SS G_CDS: 0.85 Total: 3.27 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 2.03 Total: 40.41 kcal Total: -60.71 5.16 -55.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762144368.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.140 kcal (2) G-P(sol) polarization free energy of solvation -60.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds