Wall clock time and date at job start Tue Mar 31 2020 11:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46722 * 2 1 4 4 C 1.47202 * 109.46925 * 119.99253 * 2 1 3 5 5 N 2.60803 * 109.47160 * 119.99347 * 2 1 3 6 6 O 1.42898 * 109.47109 * 239.99756 * 2 1 3 7 7 C 1.35897 * 117.00079 * 84.95120 * 6 2 1 8 8 C 1.38735 * 120.05256 * 174.27105 * 7 6 2 9 9 C 1.38151 * 119.93913 * 179.74547 * 8 7 6 10 10 C 1.38258 * 120.05549 * 0.50838 * 9 8 7 11 11 C 1.50708 * 119.94307 * 179.74365 * 10 9 8 12 12 N 1.46897 * 109.46819 * 270.02409 * 11 10 9 13 13 C 1.46848 * 111.00550 * 294.20633 * 12 11 10 14 14 C 1.53037 * 109.52522 * 174.16419 * 13 12 11 15 15 C 1.53116 * 109.27576 * 59.18125 * 14 13 12 16 16 C 1.50702 * 109.57199 * 182.40783 * 15 14 13 17 17 H 1.07996 * 120.00165 * 119.71765 * 16 15 14 18 18 C 1.37884 * 119.99904 * 299.71515 * 16 15 14 19 19 N 1.31511 * 120.00286 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99851 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47036 * 89.99880 * 20 18 16 22 22 H 1.48496 * 109.47371 * 210.00086 * 20 18 16 23 23 H 1.48502 * 109.47121 * 330.00046 * 20 18 16 24 24 C 1.53116 * 109.16255 * 302.34500 * 15 14 13 25 25 C 1.46850 * 110.99628 * 169.99859 * 12 11 10 26 26 C 1.38270 * 120.11541 * 359.77172 * 10 9 8 27 27 C 1.38148 * 120.05236 * 359.97224 * 26 10 9 28 28 H 1.09002 * 109.46890 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46794 * 300.00109 * 1 2 3 30 30 H 1.08994 * 109.47156 * 60.00608 * 1 2 3 31 31 H 1.07998 * 120.02861 * 359.97438 * 8 7 6 32 32 H 1.08002 * 119.96990 * 180.23457 * 9 8 7 33 33 H 1.08999 * 109.46998 * 30.02669 * 11 10 9 34 34 H 1.08997 * 109.46696 * 150.02312 * 11 10 9 35 35 H 1.09000 * 109.45987 * 294.18290 * 13 12 11 36 36 H 1.09004 * 109.45527 * 54.14534 * 13 12 11 37 37 H 1.08999 * 109.50286 * 299.23951 * 14 13 12 38 38 H 1.09004 * 109.49809 * 179.12156 * 14 13 12 39 39 H 1.08999 * 109.52457 * 62.25245 * 15 14 13 40 40 H 0.96994 * 120.00245 * 180.02562 * 19 18 16 41 41 H 1.09004 * 109.49969 * 297.71228 * 24 15 14 42 42 H 1.08999 * 109.53268 * 177.61702 * 24 15 14 43 43 H 1.08997 * 109.46500 * 305.85866 * 25 12 11 44 44 H 1.09004 * 109.46260 * 65.83545 * 25 12 11 45 45 H 1.08000 * 119.97293 * 180.02562 * 26 10 9 46 46 H 1.07997 * 120.02611 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6938 1.2020 5 7 2.3994 -1.2292 2.1296 6 8 2.0064 -0.6737 -1.1667 7 6 2.1116 0.0622 -2.3044 8 6 2.6778 -0.4944 -3.4420 9 6 2.7788 0.2541 -4.5988 10 6 2.3257 1.5602 -4.6202 11 6 2.4424 2.3763 -5.8818 12 7 3.7311 3.0813 -5.8914 13 6 3.7929 4.0797 -4.8163 14 6 5.1956 4.6896 -4.7648 15 6 5.5124 5.3434 -6.1126 16 6 6.9147 5.8946 -6.0891 17 1 7.6490 5.5330 -6.7937 18 6 7.2604 6.8608 -5.1681 19 7 6.3664 7.3008 -4.3098 20 14 8.9989 7.5435 -5.1385 21 1 9.0827 8.7230 -6.0368 22 1 9.3475 7.9503 -3.7536 23 1 9.9485 6.5000 -5.6018 24 6 5.3938 4.2933 -7.2207 25 6 3.9855 3.6949 -7.2011 26 6 1.7663 2.1191 -3.4860 27 6 1.6582 1.3731 -2.3283 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 3.0360 -1.5131 -3.4244 32 1 3.2161 -0.1800 -5.4858 33 1 2.3824 1.7171 -6.7478 34 1 1.6306 3.1025 -5.9210 35 1 3.0621 4.8653 -5.0079 36 1 3.5697 3.6009 -3.8629 37 1 5.9255 3.9066 -4.5595 38 1 5.2365 5.4418 -3.9769 39 1 4.8062 6.1522 -6.3001 40 1 6.6095 7.9807 -3.6621 41 1 6.1270 3.5041 -7.0541 42 1 5.5767 4.7618 -8.1878 43 1 3.9021 2.9367 -7.9798 44 1 3.2538 4.4825 -7.3814 45 1 1.4128 3.1394 -3.5054 46 1 1.2216 1.8102 -1.4425 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781926524.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:18 Heat of formation + Delta-G solvation = 16.161187 kcal Electronic energy + Delta-G solvation = -25482.854452 eV Core-core repulsion = 21951.665674 eV Total energy + Delta-G solvation = -3531.188778 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.67873 -38.87400 -37.59437 -36.63785 -34.05489 -32.59214 -31.72263 -30.94637 -29.84274 -29.69719 -26.48818 -25.19375 -24.12350 -23.07963 -22.00398 -21.72671 -20.74101 -18.73780 -18.63371 -18.41583 -16.38854 -15.98629 -15.68946 -15.59156 -15.28009 -14.78725 -14.43932 -14.35311 -14.02881 -13.71579 -13.56863 -13.41324 -13.15159 -13.09473 -12.89154 -12.68061 -12.57658 -12.47726 -12.25388 -11.91879 -11.66605 -11.51224 -11.22264 -11.14329 -10.92782 -10.88026 -10.66739 -10.41931 -10.19972 -9.95885 -9.41877 -9.03578 -8.95634 -8.66949 -8.28053 -8.24423 -7.72707 -5.95995 -4.00878 1.29330 1.32446 1.82237 2.26565 2.99593 3.32093 3.38998 3.42705 3.57525 3.65165 4.25250 4.41975 4.46376 4.58804 4.72128 4.75090 4.94854 5.00627 5.11511 5.25973 5.34377 5.35093 5.49431 5.54881 5.65212 5.72636 5.75019 5.91371 5.97743 6.11587 6.15885 6.20392 6.27228 6.34100 6.62797 6.63440 6.64080 6.67624 6.86732 6.98771 7.09050 7.15147 7.18119 7.45376 7.62858 7.69576 7.84721 8.06882 8.17591 8.50264 9.02745 9.63385 11.10185 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.014641 B = 0.002892 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.964660 B = 9680.444121 C =10934.606638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.184 3.816 3 H 0.119 0.881 4 C 0.213 3.787 5 N -0.399 5.399 6 O -0.305 6.305 7 C 0.119 3.881 8 C -0.146 4.146 9 C -0.059 4.059 10 C -0.096 4.096 11 C 0.092 3.908 12 N -0.530 5.530 13 C 0.055 3.945 14 C -0.103 4.103 15 C 0.048 3.952 16 C -0.509 4.509 17 H 0.054 0.946 18 C 0.060 3.940 19 N -0.892 5.892 20 Si 0.889 3.111 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.106 4.106 25 C 0.061 3.939 26 C -0.070 4.070 27 C -0.207 4.207 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.076 0.924 34 H 0.036 0.964 35 H 0.020 0.980 36 H 0.060 0.940 37 H 0.042 0.958 38 H 0.091 0.909 39 H 0.019 0.981 40 H 0.259 0.741 41 H 0.056 0.944 42 H 0.049 0.951 43 H 0.057 0.943 44 H 0.024 0.976 45 H 0.125 0.875 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.986 -12.998 3.009 20.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.125 3.875 3 H 0.137 0.863 4 C -0.106 4.106 5 N -0.077 5.077 6 O -0.218 6.218 7 C 0.074 3.926 8 C -0.164 4.164 9 C -0.078 4.078 10 C -0.097 4.097 11 C -0.035 4.035 12 N -0.255 5.255 13 C -0.072 4.072 14 C -0.141 4.141 15 C 0.029 3.971 16 C -0.548 4.548 17 H 0.072 0.928 18 C -0.140 4.140 19 N -0.532 5.532 20 Si 0.717 3.283 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.144 4.144 25 C -0.067 4.067 26 C -0.089 4.089 27 C -0.226 4.226 28 H 0.095 0.905 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.147 0.853 32 H 0.149 0.851 33 H 0.095 0.905 34 H 0.054 0.946 35 H 0.038 0.962 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.109 0.891 39 H 0.038 0.962 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.076 0.924 44 H 0.042 0.958 45 H 0.143 0.857 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -14.011 -14.204 4.634 20.483 hybrid contribution 0.170 1.444 -0.300 1.484 sum -13.842 -12.760 4.334 19.318 Atomic orbital electron populations 1.22364 0.91563 1.04792 1.04655 1.19392 0.95100 0.95220 0.77814 0.86347 1.28499 0.93614 0.94051 0.94467 1.81238 1.07521 1.07230 1.11671 1.86112 1.81951 1.37705 1.16069 1.18845 0.97468 0.90508 0.85757 1.20392 1.03590 1.01312 0.91140 1.20844 0.96402 0.93306 0.97219 1.19769 0.99594 0.94496 0.95822 1.20994 0.91648 0.96206 0.94692 1.62039 1.28853 1.29890 1.04745 1.22351 1.00226 0.91665 0.92983 1.21645 0.91306 0.98765 1.02431 1.18681 0.96484 0.91848 0.90066 1.21214 0.96370 1.20773 1.16402 0.92786 1.24962 0.96960 0.96491 0.95600 1.69869 1.33522 1.29918 1.19853 0.86647 0.85255 0.79275 0.77131 1.20833 1.21314 1.19956 1.21678 0.93579 0.99194 0.99980 1.22124 0.98714 0.96320 0.89508 1.20902 0.97042 0.99166 0.91770 1.21183 1.07376 0.93974 1.00062 0.90466 0.89886 0.89452 0.85277 0.85124 0.90535 0.94621 0.96159 0.92208 0.93903 0.89063 0.96241 0.93155 0.92474 0.93197 0.92412 0.95816 0.85708 0.85243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.84 9.13 37.16 0.34 -0.50 16 2 C 0.18 1.33 2.67 -29.51 -0.08 1.25 16 3 H 0.12 0.67 6.31 -51.93 -0.33 0.34 16 4 C 0.21 2.05 15.03 -20.76 -0.31 1.74 16 5 N -0.40 -4.89 18.54 42.15 0.78 -4.11 16 6 O -0.31 -3.00 9.76 -19.42 -0.19 -3.19 16 7 C 0.12 1.24 6.60 -39.22 -0.26 0.98 16 8 C -0.15 -1.59 9.99 -39.43 -0.39 -1.98 16 9 C -0.06 -0.67 9.69 -39.61 -0.38 -1.06 16 10 C -0.10 -1.18 4.89 -104.60 -0.51 -1.69 16 11 C 0.09 1.22 5.12 -4.97 -0.03 1.19 16 12 N -0.53 -8.93 4.65 -236.11 -1.10 -10.03 16 13 C 0.05 1.03 5.16 -3.83 -0.02 1.01 16 14 C -0.10 -2.40 5.12 -26.65 -0.14 -2.54 16 15 C 0.05 1.17 2.16 -91.65 -0.20 0.97 16 16 C -0.51 -13.91 8.57 -34.44 -0.29 -14.20 16 17 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 18 C 0.06 1.67 5.31 -17.82 -0.09 1.57 16 19 N -0.89 -25.20 11.37 55.43 0.63 -24.57 16 20 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 24 C -0.11 -2.19 5.32 -26.65 -0.14 -2.33 16 25 C 0.06 1.04 5.46 -3.83 -0.02 1.02 16 26 C -0.07 -0.79 7.86 -39.60 -0.31 -1.11 16 27 C -0.21 -2.02 8.24 -39.43 -0.33 -2.35 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 0.38 6.91 -51.93 -0.36 0.02 16 31 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 32 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.08 0.89 7.93 -51.93 -0.41 0.48 16 34 H 0.04 0.46 8.07 -51.93 -0.42 0.04 16 35 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 1.05 5.75 -51.93 -0.30 0.75 16 37 H 0.04 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.09 2.37 6.17 -51.93 -0.32 2.05 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 41 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.06 0.86 8.02 -51.93 -0.42 0.44 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.12 1.34 7.95 -52.49 -0.42 0.92 16 46 H 0.13 0.89 5.43 -52.49 -0.29 0.61 16 LS Contribution 371.34 15.07 5.60 5.60 Total: -1.00 -30.52 371.34 -9.49 -40.02 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -7.02 Total: -1.94 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: -3.17 Total: -18.01 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.31 Total: -38.71 kcal Atomic # 8 Polarization: -3.00 SS G_CDS: -0.19 Total: -3.19 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.52 -9.49 -40.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781926524.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.177 kcal (2) G-P(sol) polarization free energy of solvation -30.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds