Wall clock time and date at job start Tue Mar 31 2020 11:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46722 * 2 1 4 4 C 1.47202 * 109.46925 * 119.99253 * 2 1 3 5 5 N 2.60803 * 109.47160 * 119.99347 * 2 1 3 6 6 O 1.42898 * 109.47109 * 239.99756 * 2 1 3 7 7 C 1.35897 * 117.00079 * 84.95120 * 6 2 1 8 8 C 1.38735 * 120.05256 * 174.27105 * 7 6 2 9 9 C 1.38151 * 119.93913 * 179.74547 * 8 7 6 10 10 C 1.38258 * 120.05549 * 0.50838 * 9 8 7 11 11 C 1.50708 * 119.94307 * 179.74365 * 10 9 8 12 12 N 1.46897 * 109.46819 * 270.02409 * 11 10 9 13 13 C 1.46848 * 111.00550 * 294.20633 * 12 11 10 14 14 C 1.53037 * 109.52522 * 174.16419 * 13 12 11 15 15 C 1.53116 * 109.27576 * 59.18125 * 14 13 12 16 16 C 1.50702 * 109.57199 * 182.40783 * 15 14 13 17 17 H 1.07996 * 120.00165 * 119.71765 * 16 15 14 18 18 C 1.37884 * 119.99904 * 299.71515 * 16 15 14 19 19 N 1.31511 * 120.00286 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99851 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47036 * 89.99880 * 20 18 16 22 22 H 1.48496 * 109.47371 * 210.00086 * 20 18 16 23 23 H 1.48502 * 109.47121 * 330.00046 * 20 18 16 24 24 C 1.53116 * 109.16255 * 302.34500 * 15 14 13 25 25 C 1.46850 * 110.99628 * 169.99859 * 12 11 10 26 26 C 1.38270 * 120.11541 * 359.77172 * 10 9 8 27 27 C 1.38148 * 120.05236 * 359.97224 * 26 10 9 28 28 H 1.09002 * 109.46890 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46794 * 300.00109 * 1 2 3 30 30 H 1.08994 * 109.47156 * 60.00608 * 1 2 3 31 31 H 1.07998 * 120.02861 * 359.97438 * 8 7 6 32 32 H 1.08002 * 119.96990 * 180.23457 * 9 8 7 33 33 H 1.08999 * 109.46998 * 30.02669 * 11 10 9 34 34 H 1.08997 * 109.46696 * 150.02312 * 11 10 9 35 35 H 1.09000 * 109.45987 * 294.18290 * 13 12 11 36 36 H 1.09004 * 109.45527 * 54.14534 * 13 12 11 37 37 H 1.08999 * 109.50286 * 299.23951 * 14 13 12 38 38 H 1.09004 * 109.49809 * 179.12156 * 14 13 12 39 39 H 1.08999 * 109.52457 * 62.25245 * 15 14 13 40 40 H 0.96994 * 120.00245 * 180.02562 * 19 18 16 41 41 H 1.09004 * 109.49969 * 297.71228 * 24 15 14 42 42 H 1.08999 * 109.53268 * 177.61702 * 24 15 14 43 43 H 1.08997 * 109.46500 * 305.85866 * 25 12 11 44 44 H 1.09004 * 109.46260 * 65.83545 * 25 12 11 45 45 H 1.08000 * 119.97293 * 180.02562 * 26 10 9 46 46 H 1.07997 * 120.02611 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6938 1.2020 5 7 2.3994 -1.2292 2.1296 6 8 2.0064 -0.6737 -1.1667 7 6 2.1116 0.0622 -2.3044 8 6 2.6778 -0.4944 -3.4420 9 6 2.7788 0.2541 -4.5988 10 6 2.3257 1.5602 -4.6202 11 6 2.4424 2.3763 -5.8818 12 7 3.7311 3.0813 -5.8914 13 6 3.7929 4.0797 -4.8163 14 6 5.1956 4.6896 -4.7648 15 6 5.5124 5.3434 -6.1126 16 6 6.9147 5.8946 -6.0891 17 1 7.6490 5.5330 -6.7937 18 6 7.2604 6.8608 -5.1681 19 7 6.3664 7.3008 -4.3098 20 14 8.9989 7.5435 -5.1385 21 1 9.0827 8.7230 -6.0368 22 1 9.3475 7.9503 -3.7536 23 1 9.9485 6.5000 -5.6018 24 6 5.3938 4.2933 -7.2207 25 6 3.9855 3.6949 -7.2011 26 6 1.7663 2.1191 -3.4860 27 6 1.6582 1.3731 -2.3283 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 3.0360 -1.5131 -3.4244 32 1 3.2161 -0.1800 -5.4858 33 1 2.3824 1.7171 -6.7478 34 1 1.6306 3.1025 -5.9210 35 1 3.0621 4.8653 -5.0079 36 1 3.5697 3.6009 -3.8629 37 1 5.9255 3.9066 -4.5595 38 1 5.2365 5.4418 -3.9769 39 1 4.8062 6.1522 -6.3001 40 1 6.6095 7.9807 -3.6621 41 1 6.1270 3.5041 -7.0541 42 1 5.5767 4.7618 -8.1878 43 1 3.9021 2.9367 -7.9798 44 1 3.2538 4.4825 -7.3814 45 1 1.4128 3.1394 -3.5054 46 1 1.2216 1.8102 -1.4425 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781926524.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:17 Heat of formation + Delta-G solvation = -0.543700 kcal Electronic energy + Delta-G solvation = -25483.578830 eV Core-core repulsion = 21951.665674 eV Total energy + Delta-G solvation = -3531.913156 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.43433 -40.03226 -38.70127 -37.51102 -35.70911 -33.65524 -32.97509 -31.78345 -31.35616 -30.92625 -27.97008 -26.15826 -25.27469 -24.01190 -23.45238 -23.15945 -21.79470 -20.29044 -19.47729 -19.15875 -18.41529 -16.89260 -16.64961 -16.53368 -16.45152 -16.22476 -15.72331 -15.36178 -14.92172 -14.83340 -14.66701 -14.49534 -14.34549 -14.20528 -14.10357 -13.95269 -13.74157 -13.32702 -13.19225 -12.96000 -12.88305 -12.83598 -12.52404 -12.48266 -12.41187 -12.10136 -11.92305 -11.84608 -11.79148 -11.59084 -11.29651 -10.76336 -10.60239 -10.34851 -9.81108 -9.19665 -8.94180 -8.05797 -6.18390 0.47686 0.50811 1.07558 1.41224 1.42603 1.52347 1.52360 2.29269 2.45166 2.77291 2.91176 3.20935 3.36538 3.73436 3.91434 3.93875 3.97562 4.11211 4.28234 4.33606 4.38075 4.46563 4.54347 4.58470 4.62757 4.76253 4.79118 4.83781 4.85226 4.90902 4.98122 5.03869 5.15003 5.19654 5.22383 5.28737 5.35532 5.39053 5.46968 5.61479 5.66345 5.81481 5.84995 6.04934 6.08621 6.24425 6.36876 6.38822 6.43395 6.44729 6.93332 7.48932 8.98504 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.014641 B = 0.002892 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.964660 B = 9680.444121 C =10934.606638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.181 3.819 3 H 0.140 0.860 4 C 0.235 3.765 5 N -0.450 5.450 6 O -0.318 6.318 7 C 0.118 3.882 8 C -0.157 4.157 9 C -0.064 4.064 10 C -0.115 4.115 11 C 0.096 3.904 12 N -0.538 5.538 13 C 0.071 3.929 14 C -0.094 4.094 15 C 0.044 3.956 16 C -0.532 4.532 17 H 0.049 0.951 18 C 0.013 3.987 19 N -0.916 5.916 20 Si 0.950 3.050 21 H -0.276 1.276 22 H -0.284 1.284 23 H -0.271 1.271 24 C -0.101 4.101 25 C 0.067 3.933 26 C -0.081 4.081 27 C -0.203 4.203 28 H 0.073 0.927 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.137 0.863 32 H 0.140 0.860 33 H 0.096 0.904 34 H 0.042 0.958 35 H 0.015 0.985 36 H 0.074 0.926 37 H 0.025 0.975 38 H 0.059 0.941 39 H -0.012 1.012 40 H 0.259 0.741 41 H 0.049 0.951 42 H 0.052 0.948 43 H 0.091 0.909 44 H 0.023 0.977 45 H 0.129 0.871 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.014 -13.707 2.740 21.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.122 3.878 3 H 0.157 0.843 4 C -0.083 4.083 5 N -0.128 5.128 6 O -0.231 6.231 7 C 0.074 3.926 8 C -0.176 4.176 9 C -0.083 4.083 10 C -0.115 4.115 11 C -0.031 4.031 12 N -0.263 5.263 13 C -0.057 4.057 14 C -0.132 4.132 15 C 0.025 3.975 16 C -0.571 4.571 17 H 0.067 0.933 18 C -0.186 4.186 19 N -0.556 5.556 20 Si 0.776 3.224 21 H -0.202 1.202 22 H -0.209 1.209 23 H -0.195 1.195 24 C -0.138 4.138 25 C -0.061 4.061 26 C -0.099 4.099 27 C -0.222 4.222 28 H 0.092 0.908 29 H 0.120 0.880 30 H 0.116 0.884 31 H 0.155 0.845 32 H 0.158 0.842 33 H 0.114 0.886 34 H 0.060 0.940 35 H 0.033 0.967 36 H 0.092 0.908 37 H 0.043 0.957 38 H 0.077 0.923 39 H 0.006 0.994 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.109 0.891 44 H 0.041 0.959 45 H 0.147 0.853 46 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -15.051 -14.925 4.357 21.639 hybrid contribution 0.472 1.638 -0.199 1.717 sum -14.578 -13.287 4.158 20.158 Atomic orbital electron populations 1.22386 0.89355 1.05089 1.06072 1.19794 0.96595 0.95418 0.75981 0.84269 1.28954 0.92196 0.92872 0.94295 1.81258 1.09279 1.08908 1.13404 1.86087 1.82165 1.38353 1.16495 1.18935 0.97082 0.90796 0.85826 1.20591 1.03788 1.01865 0.91360 1.20974 0.96326 0.93158 0.97808 1.19787 1.00995 0.94877 0.95867 1.21049 0.89598 0.96237 0.96233 1.61967 1.31697 1.28853 1.03777 1.22047 0.96808 0.92054 0.94780 1.21397 0.93868 0.97383 1.00595 1.18662 0.94344 0.92158 0.92316 1.21604 0.97732 1.21305 1.16425 0.93289 1.25708 1.00641 0.96886 0.95333 1.70003 1.35144 1.30203 1.20227 0.85685 0.80865 0.78670 0.77209 1.20189 1.20938 1.19522 1.21547 0.96014 0.97837 0.98450 1.22051 0.96087 0.97203 0.90737 1.21065 0.97194 0.99594 0.92096 1.21442 1.06610 0.93505 1.00602 0.90817 0.87989 0.88443 0.84473 0.84222 0.88552 0.94017 0.96727 0.90771 0.95656 0.92275 0.99361 0.93155 0.93254 0.92902 0.89099 0.95889 0.85314 0.82391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 9.13 71.98 0.66 -0.49 16 2 C 0.18 2.16 2.67 28.79 0.08 2.24 16 3 H 0.14 1.12 6.31 -2.39 -0.02 1.10 16 4 C 0.24 4.24 15.03 89.44 1.34 5.58 16 5 N -0.45 -10.85 18.54 20.01 0.37 -10.48 16 6 O -0.32 -5.59 9.76 -92.40 -0.90 -6.49 16 7 C 0.12 2.22 6.60 22.51 0.15 2.36 16 8 C -0.16 -3.15 9.99 22.37 0.22 -2.92 16 9 C -0.06 -1.34 9.69 22.25 0.22 -1.12 16 10 C -0.11 -2.57 4.89 -19.85 -0.10 -2.67 16 11 C 0.10 2.28 5.12 85.56 0.44 2.72 16 12 N -0.54 -17.23 4.65 -900.91 -4.19 -21.42 16 13 C 0.07 2.63 5.16 86.33 0.45 3.08 16 14 C -0.09 -4.48 5.12 30.65 0.16 -4.32 16 15 C 0.04 2.20 2.16 -11.46 -0.02 2.17 16 16 C -0.53 -29.73 8.57 25.60 0.22 -29.51 16 17 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 18 C 0.01 0.71 5.31 84.66 0.45 1.16 16 19 N -0.92 -52.93 11.37 21.45 0.24 -52.68 16 20 Si 0.95 44.03 29.54 68.60 2.03 46.06 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 22 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 23 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 24 C -0.10 -4.11 5.32 30.64 0.16 -3.95 16 25 C 0.07 2.17 5.46 86.32 0.47 2.64 16 26 C -0.08 -1.65 7.86 22.26 0.18 -1.47 16 27 C -0.20 -3.40 8.24 22.37 0.18 -3.22 16 28 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.10 0.33 8.14 -2.39 -0.02 0.32 16 30 H 0.10 0.51 6.91 -2.39 -0.02 0.50 16 31 H 0.14 2.42 8.06 -2.91 -0.02 2.39 16 32 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 33 H 0.10 1.92 7.93 -2.39 -0.02 1.90 16 34 H 0.04 0.96 8.07 -2.39 -0.02 0.94 16 35 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.07 2.53 5.75 -2.38 -0.01 2.52 16 37 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.06 3.18 6.17 -2.39 -0.01 3.16 16 39 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 40 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 41 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 42 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.09 2.40 8.02 -2.39 -0.02 2.38 16 44 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 45 H 0.13 2.47 7.95 -2.91 -0.02 2.45 16 46 H 0.16 1.60 5.43 -2.91 -0.02 1.58 16 Total: -1.00 -67.58 371.34 3.77 -63.81 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: 0.97 Total: 8.92 kcal Atomic # 6 Polarization: -32.96 SS G_CDS: 5.25 Total: -27.72 kcal Atomic # 7 Polarization: -81.01 SS G_CDS: -3.57 Total: -84.58 kcal Atomic # 8 Polarization: -5.59 SS G_CDS: -0.90 Total: -6.49 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -67.58 3.77 -63.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781926524.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.269 kcal (2) G-P(sol) polarization free energy of solvation -67.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds