Wall clock time and date at job start Tue Mar 31 2020 11:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47312 * 2 1 4 4 C 1.47195 * 109.47340 * 120.00330 * 2 1 3 5 5 N 2.60804 * 109.47205 * 120.00166 * 2 1 3 6 6 O 1.42902 * 109.46959 * 240.00270 * 2 1 3 7 7 C 1.35895 * 117.00305 * 84.82693 * 6 2 1 8 8 C 1.38732 * 120.05845 * 174.62241 * 7 6 2 9 9 C 1.38146 * 119.93994 * 180.02562 * 8 7 6 10 10 C 1.38263 * 120.06200 * 0.02734 * 9 8 7 11 11 C 1.50694 * 119.94405 * 179.97438 * 10 9 8 12 12 N 1.46902 * 109.47291 * 89.99982 * 11 10 9 13 13 C 1.46841 * 110.99647 * 293.95211 * 12 11 10 14 14 C 1.53039 * 109.52218 * 185.83939 * 13 12 11 15 15 C 1.53126 * 109.27820 * 300.82364 * 14 13 12 16 16 C 1.53110 * 109.16202 * 57.64819 * 15 14 13 17 17 H 1.09006 * 109.50066 * 62.29261 * 16 15 14 18 18 C 1.50703 * 109.50382 * 182.40491 * 16 15 14 19 19 H 1.08001 * 119.99847 * 120.00431 * 18 16 15 20 20 C 1.37876 * 120.00129 * 300.00542 * 18 16 15 21 21 N 1.31511 * 119.99888 * 359.97438 * 20 18 16 22 22 Si 1.86801 * 119.99778 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47272 * 90.00172 * 22 20 18 24 24 H 1.48505 * 109.47005 * 209.99731 * 22 20 18 25 25 H 1.48499 * 109.47104 * 329.99964 * 22 20 18 26 26 C 1.46847 * 110.99876 * 58.16019 * 12 11 10 27 27 C 1.38267 * 120.10767 * 0.24863 * 10 9 8 28 28 C 1.38148 * 120.05474 * 359.45098 * 27 10 9 29 29 H 1.09004 * 109.46843 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46857 * 299.99673 * 1 2 3 31 31 H 1.08998 * 109.47197 * 59.99911 * 1 2 3 32 32 H 1.07994 * 120.02742 * 0.02562 * 8 7 6 33 33 H 1.08006 * 119.96525 * 179.97438 * 9 8 7 34 34 H 1.09003 * 109.47173 * 329.99788 * 11 10 9 35 35 H 1.09001 * 109.47233 * 209.99996 * 11 10 9 36 36 H 1.09002 * 109.46423 * 65.82365 * 13 12 11 37 37 H 1.08999 * 109.46783 * 305.84969 * 13 12 11 38 38 H 1.09004 * 109.50554 * 180.87971 * 14 13 12 39 39 H 1.09003 * 109.50576 * 60.75563 * 14 13 12 40 40 H 1.09007 * 109.51689 * 297.74648 * 15 14 13 41 41 H 1.08996 * 109.57298 * 177.59577 * 15 14 13 42 42 H 0.97001 * 120.00246 * 180.02562 * 21 20 18 43 43 H 1.09004 * 109.45942 * 54.14850 * 26 12 11 44 44 H 1.08998 * 109.46195 * 294.17918 * 26 12 11 45 45 H 1.08005 * 119.96922 * 179.70780 * 27 10 9 46 46 H 1.08005 * 120.02304 * 180.24939 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0207 -0.6939 1.2018 5 7 2.3994 -1.2295 2.1294 6 8 2.0063 -0.6736 -1.1668 7 6 2.1090 0.0617 -2.3050 8 6 2.6684 -0.4969 -3.4451 9 6 2.7721 0.2530 -4.6007 10 6 2.3196 1.5593 -4.6216 11 6 2.4345 2.3750 -5.8834 12 7 1.2205 2.2002 -6.6919 13 6 1.1063 0.8193 -7.1779 14 6 -0.0857 0.7097 -8.1314 15 6 -1.3633 1.1179 -7.3927 16 6 -1.1996 2.5421 -6.8549 17 1 -1.0629 3.2321 -7.6877 18 6 -2.4298 2.9303 -6.0758 19 1 -2.3468 3.1944 -5.0318 20 6 -3.6613 2.9482 -6.6956 21 7 -3.7622 2.6271 -7.9669 22 14 -5.1862 3.4286 -5.7295 23 1 -5.3925 4.8959 -5.8277 24 1 -6.3682 2.7241 -6.2879 25 1 -5.0101 3.0478 -4.3050 26 6 0.0246 2.5986 -5.9384 27 6 1.7669 2.1201 -3.4850 28 6 1.6552 1.3725 -2.3287 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 3.0224 -1.5171 -3.4292 33 1 3.2079 -0.1814 -5.4883 34 1 3.3018 2.0421 -6.4536 35 1 2.5512 3.4278 -5.6261 36 1 0.9578 0.1478 -6.3322 37 1 2.0195 0.5430 -7.7049 38 1 -0.1796 -0.3189 -8.4798 39 1 0.0684 1.3708 -8.9842 40 1 -1.5388 0.4332 -6.5629 41 1 -2.2092 1.0826 -8.0792 42 1 -4.6285 2.6400 -8.4031 43 1 0.1524 3.6148 -5.5652 44 1 -0.1187 1.9188 -5.0986 45 1 1.4184 3.1423 -3.5025 46 1 1.2198 1.8099 -1.4423 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826861061.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:29 Heat of formation + Delta-G solvation = 16.158418 kcal Electronic energy + Delta-G solvation = -26157.097113 eV Core-core repulsion = 22625.908215 eV Total energy + Delta-G solvation = -3531.188898 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.69101 -39.07877 -37.41827 -36.57537 -33.92119 -32.55762 -31.90569 -30.97987 -29.81286 -29.53343 -25.96413 -24.99098 -24.79771 -23.04799 -22.27018 -21.33122 -20.79663 -18.77142 -18.60008 -18.30616 -16.43073 -15.93479 -15.69819 -15.61456 -14.96272 -14.70000 -14.44354 -14.17220 -14.02962 -13.86446 -13.56203 -13.46152 -13.29632 -13.09379 -12.71821 -12.59311 -12.48174 -12.43172 -12.23138 -11.83598 -11.71260 -11.48479 -11.29639 -11.10114 -10.96351 -10.81254 -10.65871 -10.59651 -10.09690 -9.82833 -9.46694 -9.06490 -8.96463 -8.69921 -8.31218 -8.18386 -7.66516 -5.96993 -4.03076 1.30197 1.36694 1.82618 2.26055 3.00607 3.29921 3.37082 3.38866 3.60196 3.70979 4.29198 4.41086 4.46768 4.65292 4.75360 4.78822 5.02979 5.08414 5.23861 5.30724 5.33145 5.35606 5.51917 5.63215 5.71931 5.74982 5.85946 6.00211 6.02538 6.10138 6.18840 6.28961 6.30497 6.45708 6.52031 6.65085 6.65863 6.74478 6.78653 6.98540 6.98608 7.17801 7.23536 7.41173 7.66447 7.75256 7.81955 8.09713 8.18876 8.48966 9.00954 9.61091 11.08968 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.011998 B = 0.003841 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.085684 B = 7288.938887 C = 8953.899096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.186 3.814 3 H 0.118 0.882 4 C 0.215 3.785 5 N -0.401 5.401 6 O -0.306 6.306 7 C 0.120 3.880 8 C -0.147 4.147 9 C -0.070 4.070 10 C -0.141 4.141 11 C 0.092 3.908 12 N -0.527 5.527 13 C 0.060 3.940 14 C -0.118 4.118 15 C -0.110 4.110 16 C 0.055 3.945 17 H 0.032 0.968 18 C -0.513 4.513 19 H 0.052 0.948 20 C 0.063 3.937 21 N -0.888 5.888 22 Si 0.888 3.112 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.275 1.275 26 C 0.066 3.934 27 C -0.061 4.061 28 C -0.206 4.206 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.029 0.971 37 H 0.055 0.945 38 H 0.045 0.955 39 H 0.059 0.941 40 H 0.028 0.972 41 H 0.090 0.910 42 H 0.259 0.741 43 H 0.056 0.944 44 H 0.026 0.974 45 H 0.128 0.872 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.260 -3.333 9.257 15.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.126 3.874 3 H 0.135 0.865 4 C -0.104 4.104 5 N -0.079 5.079 6 O -0.219 6.219 7 C 0.075 3.925 8 C -0.166 4.166 9 C -0.089 4.089 10 C -0.143 4.143 11 C -0.036 4.036 12 N -0.249 5.249 13 C -0.068 4.068 14 C -0.156 4.156 15 C -0.148 4.148 16 C 0.036 3.964 17 H 0.050 0.950 18 C -0.551 4.551 19 H 0.071 0.929 20 C -0.138 4.138 21 N -0.527 5.527 22 Si 0.716 3.284 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.200 1.200 26 C -0.061 4.061 27 C -0.080 4.080 28 C -0.225 4.225 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.048 0.952 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.047 0.953 41 H 0.108 0.892 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.045 0.955 45 H 0.146 0.854 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 12.763 -4.036 10.076 16.755 hybrid contribution -1.244 -0.015 0.953 1.567 sum 11.519 -4.051 11.030 16.455 Atomic orbital electron populations 1.22394 0.91280 1.05059 1.04954 1.19394 0.95345 0.94938 0.77737 0.86512 1.28529 0.93472 0.93995 0.94453 1.81231 1.07808 1.07182 1.11678 1.86108 1.81871 1.37838 1.16051 1.18835 0.97392 0.90467 0.85775 1.20359 1.04030 1.01012 0.91152 1.20881 0.97836 0.93444 0.96762 1.20761 1.00612 0.95819 0.97130 1.21256 0.94519 0.98795 0.88999 1.62428 1.02657 1.22777 1.37074 1.22077 0.98393 0.88799 0.97560 1.21683 0.96101 0.99371 0.98450 1.21639 0.95999 0.98013 0.99161 1.18661 0.89986 0.93444 0.94333 0.94973 1.21128 0.91970 1.45498 0.96546 0.92930 1.24927 0.98780 0.95278 0.94832 1.69888 1.24284 1.48570 1.09952 0.86661 0.82941 0.78561 0.80204 1.20733 1.21308 1.20047 1.22342 0.89746 0.98189 0.95779 1.20933 0.95808 0.99841 0.91415 1.21234 1.06824 0.94062 1.00364 0.90349 0.89849 0.89104 0.85398 0.85500 0.90684 0.90290 0.95235 0.92626 0.93634 0.92185 0.95269 0.89198 0.93086 0.92598 0.95527 0.85442 0.85207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.27 9.12 37.16 0.34 -0.93 16 2 C 0.19 1.48 2.68 -29.52 -0.08 1.40 16 3 H 0.12 0.67 6.31 -51.93 -0.33 0.34 16 4 C 0.21 2.13 15.03 -20.76 -0.31 1.82 16 5 N -0.40 -4.93 18.54 42.16 0.78 -4.15 16 6 O -0.31 -3.28 9.76 -19.41 -0.19 -3.47 16 7 C 0.12 1.37 6.60 -39.22 -0.26 1.11 16 8 C -0.15 -1.71 9.99 -39.43 -0.39 -2.11 16 9 C -0.07 -0.84 8.10 -39.61 -0.32 -1.16 16 10 C -0.14 -1.81 4.03 -104.60 -0.42 -2.23 16 11 C 0.09 1.24 5.55 -4.98 -0.03 1.21 16 12 N -0.53 -9.04 4.86 -236.12 -1.15 -10.19 16 13 C 0.06 0.99 4.82 -3.84 -0.02 0.97 16 14 C -0.12 -2.25 6.09 -26.65 -0.16 -2.41 16 15 C -0.11 -2.55 5.02 -26.61 -0.13 -2.69 16 16 C 0.05 1.32 2.26 -91.70 -0.21 1.11 16 17 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 18 C -0.51 -13.62 8.56 -34.44 -0.29 -13.92 16 19 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 20 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 21 N -0.89 -24.95 11.35 55.43 0.63 -24.32 16 22 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 C 0.07 1.32 3.77 -3.83 -0.01 1.30 16 27 C -0.06 -0.75 8.02 -39.60 -0.32 -1.07 16 28 C -0.21 -2.25 8.24 -39.43 -0.32 -2.57 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.09 0.70 6.90 -51.93 -0.36 0.35 16 32 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 33 H 0.13 1.33 8.03 -52.48 -0.42 0.90 16 34 H 0.07 0.89 8.00 -51.93 -0.42 0.47 16 35 H 0.08 1.00 8.08 -51.93 -0.42 0.58 16 36 H 0.03 0.50 6.55 -51.93 -0.34 0.16 16 37 H 0.06 0.80 8.06 -51.93 -0.42 0.38 16 38 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.03 0.68 8.14 -51.92 -0.42 0.26 16 41 H 0.09 2.35 6.15 -51.93 -0.32 2.03 16 42 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 43 H 0.06 1.09 8.12 -51.93 -0.42 0.67 16 44 H 0.03 0.54 6.48 -51.93 -0.34 0.20 16 45 H 0.13 1.50 8.03 -52.48 -0.42 1.08 16 46 H 0.13 1.06 5.43 -52.48 -0.28 0.78 16 LS Contribution 367.70 15.07 5.54 5.54 Total: -1.00 -29.86 367.70 -9.44 -39.29 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -6.99 Total: 0.07 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -3.04 Total: -18.54 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.26 Total: -38.66 kcal Atomic # 8 Polarization: -3.28 SS G_CDS: -0.19 Total: -3.47 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.86 -9.44 -39.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826861061.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.453 kcal (2) G-P(sol) polarization free energy of solvation -29.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds