Wall clock time and date at job start Tue Mar 31 2020 11:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47312 * 2 1 4 4 C 1.47195 * 109.47340 * 120.00330 * 2 1 3 5 5 N 2.60804 * 109.47205 * 120.00166 * 2 1 3 6 6 O 1.42902 * 109.46959 * 240.00270 * 2 1 3 7 7 C 1.35895 * 117.00305 * 84.82693 * 6 2 1 8 8 C 1.38732 * 120.05845 * 174.62241 * 7 6 2 9 9 C 1.38146 * 119.93994 * 180.02562 * 8 7 6 10 10 C 1.38263 * 120.06200 * 0.02734 * 9 8 7 11 11 C 1.50694 * 119.94405 * 179.97438 * 10 9 8 12 12 N 1.46902 * 109.47291 * 89.99982 * 11 10 9 13 13 C 1.46841 * 110.99647 * 293.95211 * 12 11 10 14 14 C 1.53039 * 109.52218 * 185.83939 * 13 12 11 15 15 C 1.53126 * 109.27820 * 300.82364 * 14 13 12 16 16 C 1.53110 * 109.16202 * 57.64819 * 15 14 13 17 17 H 1.09006 * 109.50066 * 62.29261 * 16 15 14 18 18 C 1.50703 * 109.50382 * 182.40491 * 16 15 14 19 19 H 1.08001 * 119.99847 * 120.00431 * 18 16 15 20 20 C 1.37876 * 120.00129 * 300.00542 * 18 16 15 21 21 N 1.31511 * 119.99888 * 359.97438 * 20 18 16 22 22 Si 1.86801 * 119.99778 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47272 * 90.00172 * 22 20 18 24 24 H 1.48505 * 109.47005 * 209.99731 * 22 20 18 25 25 H 1.48499 * 109.47104 * 329.99964 * 22 20 18 26 26 C 1.46847 * 110.99876 * 58.16019 * 12 11 10 27 27 C 1.38267 * 120.10767 * 0.24863 * 10 9 8 28 28 C 1.38148 * 120.05474 * 359.45098 * 27 10 9 29 29 H 1.09004 * 109.46843 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46857 * 299.99673 * 1 2 3 31 31 H 1.08998 * 109.47197 * 59.99911 * 1 2 3 32 32 H 1.07994 * 120.02742 * 0.02562 * 8 7 6 33 33 H 1.08006 * 119.96525 * 179.97438 * 9 8 7 34 34 H 1.09003 * 109.47173 * 329.99788 * 11 10 9 35 35 H 1.09001 * 109.47233 * 209.99996 * 11 10 9 36 36 H 1.09002 * 109.46423 * 65.82365 * 13 12 11 37 37 H 1.08999 * 109.46783 * 305.84969 * 13 12 11 38 38 H 1.09004 * 109.50554 * 180.87971 * 14 13 12 39 39 H 1.09003 * 109.50576 * 60.75563 * 14 13 12 40 40 H 1.09007 * 109.51689 * 297.74648 * 15 14 13 41 41 H 1.08996 * 109.57298 * 177.59577 * 15 14 13 42 42 H 0.97001 * 120.00246 * 180.02562 * 21 20 18 43 43 H 1.09004 * 109.45942 * 54.14850 * 26 12 11 44 44 H 1.08998 * 109.46195 * 294.17918 * 26 12 11 45 45 H 1.08005 * 119.96922 * 179.70780 * 27 10 9 46 46 H 1.08005 * 120.02304 * 180.24939 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0207 -0.6939 1.2018 5 7 2.3994 -1.2295 2.1294 6 8 2.0063 -0.6736 -1.1668 7 6 2.1090 0.0617 -2.3050 8 6 2.6684 -0.4969 -3.4451 9 6 2.7721 0.2530 -4.6007 10 6 2.3196 1.5593 -4.6216 11 6 2.4345 2.3750 -5.8834 12 7 1.2205 2.2002 -6.6919 13 6 1.1063 0.8193 -7.1779 14 6 -0.0857 0.7097 -8.1314 15 6 -1.3633 1.1179 -7.3927 16 6 -1.1996 2.5421 -6.8549 17 1 -1.0629 3.2321 -7.6877 18 6 -2.4298 2.9303 -6.0758 19 1 -2.3468 3.1944 -5.0318 20 6 -3.6613 2.9482 -6.6956 21 7 -3.7622 2.6271 -7.9669 22 14 -5.1862 3.4286 -5.7295 23 1 -5.3925 4.8959 -5.8277 24 1 -6.3682 2.7241 -6.2879 25 1 -5.0101 3.0478 -4.3050 26 6 0.0246 2.5986 -5.9384 27 6 1.7669 2.1201 -3.4850 28 6 1.6552 1.3725 -2.3287 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 3.0224 -1.5171 -3.4292 33 1 3.2079 -0.1814 -5.4883 34 1 3.3018 2.0421 -6.4536 35 1 2.5512 3.4278 -5.6261 36 1 0.9578 0.1478 -6.3322 37 1 2.0195 0.5430 -7.7049 38 1 -0.1796 -0.3189 -8.4798 39 1 0.0684 1.3708 -8.9842 40 1 -1.5388 0.4332 -6.5629 41 1 -2.2092 1.0826 -8.0792 42 1 -4.6285 2.6400 -8.4031 43 1 0.1524 3.6148 -5.5652 44 1 -0.1187 1.9188 -5.0986 45 1 1.4184 3.1423 -3.5025 46 1 1.2198 1.8099 -1.4423 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826861061.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:28 Heat of formation + Delta-G solvation = -0.266185 kcal Electronic energy + Delta-G solvation = -26157.809338 eV Core-core repulsion = 22625.908215 eV Total energy + Delta-G solvation = -3531.901122 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.53257 -40.22350 -38.54178 -37.50172 -35.55308 -33.81070 -33.02995 -31.96608 -31.38699 -30.65386 -27.07262 -26.85474 -25.59868 -24.02914 -23.56501 -22.82841 -21.96324 -20.19674 -19.48985 -19.17214 -18.37752 -16.89444 -16.65161 -16.57822 -16.46306 -15.87849 -15.74003 -15.39246 -15.07060 -14.95021 -14.75626 -14.43481 -14.31157 -14.18965 -14.08300 -13.90400 -13.79902 -13.30914 -13.20963 -13.06790 -12.84646 -12.74132 -12.55494 -12.52909 -12.45573 -12.15499 -11.93232 -11.78243 -11.64419 -11.55704 -11.31942 -10.80143 -10.58706 -10.32858 -9.84759 -9.17386 -8.93781 -8.02753 -6.16331 0.44131 0.47726 1.04204 1.44186 1.44936 1.48967 1.54366 2.25513 2.46641 2.80412 2.88449 3.24578 3.35226 3.69417 3.86186 3.90959 4.00124 4.08923 4.26683 4.33829 4.39532 4.45274 4.50250 4.57088 4.69641 4.74711 4.77007 4.82000 4.88836 4.99849 5.03167 5.07753 5.15076 5.18238 5.20451 5.27293 5.33666 5.42960 5.46124 5.58902 5.69123 5.74981 5.81236 6.04590 6.20056 6.21309 6.28952 6.36899 6.46043 6.53917 6.97469 7.51463 9.01804 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.011998 B = 0.003841 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.085684 B = 7288.938887 C = 8953.899096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.185 3.815 3 H 0.146 0.854 4 C 0.237 3.763 5 N -0.446 5.446 6 O -0.318 6.318 7 C 0.118 3.882 8 C -0.158 4.158 9 C -0.073 4.073 10 C -0.155 4.155 11 C 0.095 3.905 12 N -0.539 5.539 13 C 0.066 3.934 14 C -0.113 4.113 15 C -0.103 4.103 16 C 0.051 3.949 17 H -0.008 1.008 18 C -0.529 4.529 19 H 0.054 0.946 20 C 0.012 3.988 21 N -0.918 5.918 22 Si 0.950 3.050 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.265 1.265 26 C 0.087 3.913 27 C -0.075 4.075 28 C -0.206 4.206 29 H 0.070 0.930 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.138 0.862 33 H 0.142 0.858 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.030 0.970 37 H 0.088 0.912 38 H 0.065 0.935 39 H 0.049 0.951 40 H 0.018 0.982 41 H 0.054 0.946 42 H 0.258 0.742 43 H 0.054 0.946 44 H 0.023 0.977 45 H 0.128 0.872 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.195 -3.383 10.443 17.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.126 3.874 3 H 0.163 0.837 4 C -0.081 4.081 5 N -0.124 5.124 6 O -0.231 6.231 7 C 0.073 3.927 8 C -0.177 4.177 9 C -0.091 4.091 10 C -0.157 4.157 11 C -0.032 4.032 12 N -0.262 5.262 13 C -0.061 4.061 14 C -0.151 4.151 15 C -0.141 4.141 16 C 0.032 3.968 17 H 0.010 0.990 18 C -0.568 4.568 19 H 0.072 0.928 20 C -0.186 4.186 21 N -0.557 5.557 22 Si 0.776 3.224 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.190 1.190 26 C -0.040 4.040 27 C -0.094 4.094 28 C -0.224 4.224 29 H 0.089 0.911 30 H 0.123 0.877 31 H 0.106 0.894 32 H 0.156 0.844 33 H 0.160 0.840 34 H 0.115 0.885 35 H 0.102 0.898 36 H 0.048 0.952 37 H 0.107 0.893 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.037 0.963 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.041 0.959 45 H 0.146 0.854 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 13.717 -4.086 11.277 18.222 hybrid contribution -1.518 -0.005 0.583 1.627 sum 12.199 -4.091 11.861 17.499 Atomic orbital electron populations 1.22405 0.90359 1.04890 1.05822 1.19708 0.95880 0.95705 0.76109 0.83662 1.28816 0.92214 0.92900 0.94182 1.81256 1.09354 1.08627 1.13188 1.86083 1.82007 1.38504 1.16500 1.18943 0.97087 0.90672 0.85968 1.20593 1.04139 1.01636 0.91339 1.21046 0.97595 0.93083 0.97417 1.20727 1.01748 0.96252 0.97009 1.21292 0.93120 0.99511 0.89272 1.62333 1.02790 1.23219 1.37825 1.22034 0.98389 0.88590 0.97117 1.21609 0.95163 1.00107 0.98241 1.21440 0.97064 0.97342 0.98273 1.18603 0.91571 0.92917 0.93685 0.98950 1.21532 0.93202 1.45244 0.96836 0.92784 1.25712 1.01785 0.95384 0.95711 1.70044 1.24766 1.49527 1.11401 0.85675 0.79206 0.78250 0.79245 1.20236 1.21318 1.18964 1.21917 0.89356 0.98188 0.94569 1.21095 0.96119 1.00217 0.91996 1.21474 1.06267 0.93772 1.00900 0.91123 0.87719 0.89424 0.84425 0.84042 0.88516 0.89803 0.95173 0.89342 0.91671 0.93263 0.96280 0.92774 0.93265 0.92705 0.95864 0.85374 0.82665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.08 9.12 71.98 0.66 -1.42 16 2 C 0.18 2.50 2.68 28.79 0.08 2.58 16 3 H 0.15 1.17 6.31 -2.39 -0.02 1.15 16 4 C 0.24 4.32 15.03 89.44 1.34 5.66 16 5 N -0.45 -10.58 18.54 20.01 0.37 -10.21 16 6 O -0.32 -6.13 9.76 -92.37 -0.90 -7.04 16 7 C 0.12 2.43 6.60 22.51 0.15 2.58 16 8 C -0.16 -3.35 9.99 22.37 0.22 -3.13 16 9 C -0.07 -1.55 8.10 22.25 0.18 -1.37 16 10 C -0.16 -3.64 4.03 -19.85 -0.08 -3.72 16 11 C 0.10 2.33 5.55 85.55 0.48 2.80 16 12 N -0.54 -17.68 4.86 -900.94 -4.38 -22.06 16 13 C 0.07 2.06 4.82 86.33 0.42 2.48 16 14 C -0.11 -4.25 6.09 30.65 0.19 -4.06 16 15 C -0.10 -4.88 5.02 30.67 0.15 -4.73 16 16 C 0.05 2.53 2.26 -11.49 -0.03 2.51 16 17 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 18 C -0.53 -28.61 8.56 25.60 0.22 -28.39 16 19 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 20 C 0.01 0.68 5.30 84.65 0.45 1.13 16 21 N -0.92 -53.08 11.35 21.45 0.24 -52.84 16 22 Si 0.95 42.87 29.54 68.60 2.03 44.90 16 23 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 24 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 25 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 26 C 0.09 3.44 3.77 86.32 0.33 3.77 16 27 C -0.08 -1.71 8.02 22.26 0.18 -1.53 16 28 C -0.21 -3.97 8.24 22.37 0.18 -3.79 16 29 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.09 1.14 6.90 -2.39 -0.02 1.12 16 32 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 33 H 0.14 2.50 8.03 -2.91 -0.02 2.48 16 34 H 0.10 1.95 8.00 -2.39 -0.02 1.93 16 35 H 0.08 1.96 8.08 -2.39 -0.02 1.94 16 36 H 0.03 0.95 6.55 -2.39 -0.02 0.93 16 37 H 0.09 2.21 8.06 -2.39 -0.02 2.20 16 38 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 41 H 0.05 2.94 6.15 -2.39 -0.01 2.92 16 42 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 43 H 0.05 2.13 8.12 -2.39 -0.02 2.11 16 44 H 0.02 0.93 6.48 -2.39 -0.02 0.91 16 45 H 0.13 2.81 8.03 -2.91 -0.02 2.79 16 46 H 0.16 2.03 5.43 -2.91 -0.02 2.02 16 Total: -1.00 -66.17 367.70 3.45 -62.72 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 0.97 Total: 13.15 kcal Atomic # 6 Polarization: -33.74 SS G_CDS: 5.11 Total: -28.63 kcal Atomic # 7 Polarization: -81.34 SS G_CDS: -3.76 Total: -85.10 kcal Atomic # 8 Polarization: -6.13 SS G_CDS: -0.90 Total: -7.04 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -66.17 3.45 -62.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826861061.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.455 kcal (2) G-P(sol) polarization free energy of solvation -66.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds