Wall clock time and date at job start Tue Mar 31 2020 10:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08996 * 109.47347 * 2 1 4 4 N 1.46903 * 109.47137 * 239.99574 * 2 1 3 5 5 C 1.46901 * 110.99651 * 85.81180 * 4 2 1 6 6 C 1.53041 * 109.46399 * 87.52127 * 5 4 2 7 7 C 1.53187 * 109.31375 * 181.37273 * 6 5 4 8 8 N 1.46929 * 108.77446 * 305.36372 * 7 6 5 9 9 C 1.36945 * 120.63141 * 233.58426 * 8 7 6 10 10 H 1.07993 * 119.99874 * 151.77694 * 9 8 7 11 11 C 1.38809 * 119.99923 * 331.78797 * 9 8 7 12 12 N 1.31612 * 120.00169 * 160.34372 * 11 9 8 13 13 Si 1.86803 * 119.99945 * 340.61364 * 11 9 8 14 14 H 1.48494 * 109.47075 * 94.12585 * 13 11 9 15 15 H 1.48500 * 109.47021 * 214.12746 * 13 11 9 16 16 H 1.48501 * 109.47288 * 334.12535 * 13 11 9 17 17 C 1.46924 * 118.73945 * 53.86229 * 8 7 6 18 18 C 1.53042 * 109.44742 * 207.58252 * 5 4 2 19 19 C 1.50707 * 109.47267 * 119.99903 * 2 1 3 20 20 C 1.33993 * 126.90686 * 99.69002 * 19 2 1 21 21 O 1.34456 * 110.15115 * 179.83022 * 20 19 2 22 22 C 1.34806 * 110.88867 * 0.45150 * 21 20 19 23 23 C 1.38942 * 133.49699 * 179.69675 * 22 21 20 24 24 C 1.37844 * 119.81957 * 180.02562 * 23 22 21 25 25 C 1.38748 * 120.68647 * 0.02562 * 24 23 22 26 26 C 1.36740 * 120.41564 * 359.94439 * 25 24 23 27 27 C 1.39403 * 119.71455 * 0.06905 * 26 25 24 28 28 H 1.09000 * 109.47115 * 304.63425 * 1 2 3 29 29 H 1.08993 * 109.47349 * 64.63632 * 1 2 3 30 30 H 1.09003 * 109.46981 * 184.63827 * 1 2 3 31 31 H 1.00893 * 110.99917 * 321.85894 * 4 2 1 32 32 H 1.08999 * 109.46097 * 327.54447 * 5 4 2 33 33 H 1.08996 * 109.49407 * 61.42074 * 6 5 4 34 34 H 1.09002 * 109.49394 * 301.32029 * 6 5 4 35 35 H 1.09004 * 109.58964 * 185.57886 * 7 6 5 36 36 H 1.09002 * 109.70487 * 65.21916 * 7 6 5 37 37 H 0.97000 * 120.00386 * 179.97438 * 12 11 9 38 38 H 1.09002 * 109.59080 * 65.92756 * 17 8 7 39 39 H 1.09002 * 109.59021 * 186.35071 * 17 8 7 40 40 H 1.08996 * 109.49555 * 298.56891 * 18 5 4 41 41 H 1.08999 * 109.49879 * 58.67048 * 18 5 4 42 42 H 1.07999 * 124.92193 * 359.97438 * 20 19 2 43 43 H 1.08003 * 120.08742 * 0.02562 * 23 22 21 44 44 H 1.07996 * 119.65791 * 179.97438 * 24 23 22 45 45 H 1.07992 * 119.79099 * 179.97438 * 25 24 23 46 46 H 1.08000 * 120.14221 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.1006 0.2271 -2.3421 6 6 3.4633 0.9236 -2.3404 7 6 3.5312 1.9068 -3.5132 8 7 3.2247 1.1836 -4.7549 9 6 4.0821 1.2340 -5.8215 10 1 4.1279 0.4090 -6.5169 11 6 4.8925 2.3453 -6.0086 12 7 5.9648 2.2577 -6.7667 13 14 4.4652 3.9633 -5.1784 14 1 5.1952 4.0661 -3.8894 15 1 4.8577 5.0912 -6.0610 16 1 3.0031 4.0187 -4.9250 17 6 1.9778 0.4104 -4.8327 18 6 1.9300 -0.5606 -3.6431 19 6 2.0323 -0.7104 1.2305 20 6 2.4706 -1.9743 1.3074 21 8 2.8417 -2.2600 2.5677 22 6 2.6540 -1.1980 3.3765 23 6 2.8672 -0.9785 4.7318 24 6 2.5681 0.2491 5.2828 25 6 2.0546 1.2714 4.4978 26 6 1.8379 1.0762 3.1618 27 6 2.1341 -0.1588 2.5870 28 1 -0.3633 0.5841 0.8456 29 1 -0.3633 0.4402 -0.9285 30 1 -0.3633 -1.0243 0.0831 31 1 1.4417 -1.4903 -1.4175 32 1 1.3108 0.9741 -2.2637 33 1 4.2526 0.1790 -2.4437 34 1 3.5938 1.4653 -1.4036 35 1 4.5328 2.3323 -3.5759 36 1 2.8036 2.7050 -3.3661 37 1 6.5309 3.0344 -6.8978 38 1 1.1246 1.0874 -4.7898 39 1 1.9541 -0.1518 -5.7662 40 1 2.7338 -1.2911 -3.7342 41 1 0.9693 -1.0752 -3.6336 42 1 2.5208 -2.6629 0.4769 43 1 3.2662 -1.7677 5.3519 44 1 2.7345 0.4167 6.3366 45 1 1.8250 2.2274 4.9445 46 1 1.4384 1.8751 2.5548 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925003868.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:40 Heat of formation + Delta-G solvation = 53.322285 kcal Electronic energy + Delta-G solvation = -26076.444449 eV Core-core repulsion = 22546.867097 eV Total energy + Delta-G solvation = -3529.577352 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.55854 -38.62771 -38.02053 -36.38558 -33.49680 -31.99691 -30.84284 -30.40693 -30.36170 -29.13106 -28.29739 -24.66587 -23.68110 -23.21466 -22.76956 -22.40441 -21.29053 -19.85713 -19.35871 -17.43093 -17.20119 -16.71829 -16.20093 -15.95120 -15.67387 -14.85782 -14.78759 -14.28053 -14.21640 -14.05387 -13.87771 -13.63726 -13.32437 -12.98069 -12.87462 -12.65875 -12.49630 -12.34694 -12.18633 -11.93246 -11.76649 -11.63015 -11.26096 -11.07776 -11.00933 -10.80067 -10.48701 -10.08898 -10.03898 -9.85101 -9.72844 -9.43260 -8.80646 -8.61807 -8.38880 -8.22824 -6.94874 -5.93009 -3.29832 0.76791 1.18158 2.27607 2.71451 3.33865 3.48913 3.51582 3.52974 3.99074 4.36710 4.52222 4.54727 4.73621 4.82601 4.96388 4.99873 5.06895 5.12269 5.19202 5.22527 5.29015 5.33370 5.40657 5.44958 5.54723 5.65951 5.75079 5.75922 5.89638 5.95803 6.03905 6.09310 6.10290 6.17092 6.23684 6.30662 6.32009 6.38150 6.42584 6.48596 6.59731 6.67276 6.78099 6.96222 7.06014 7.24742 7.45034 7.99404 8.35104 8.96286 9.74060 10.12256 11.23169 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.019571 B = 0.003084 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.361025 B = 9078.210782 C = 9607.165087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.155 3.845 3 H 0.087 0.913 4 N -0.683 5.683 5 C 0.098 3.902 6 C -0.118 4.118 7 C 0.126 3.874 8 N -0.605 5.605 9 C -0.259 4.259 10 H 0.085 0.915 11 C 0.023 3.977 12 N -0.910 5.910 13 Si 0.883 3.117 14 H -0.289 1.289 15 H -0.304 1.304 16 H -0.271 1.271 17 C 0.151 3.849 18 C -0.135 4.135 19 C -0.161 4.161 20 C 0.025 3.975 21 O -0.197 6.197 22 C 0.049 3.951 23 C -0.108 4.108 24 C -0.099 4.099 25 C -0.139 4.139 26 C -0.071 4.071 27 C -0.119 4.119 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.337 0.663 32 H 0.040 0.960 33 H 0.070 0.930 34 H 0.049 0.951 35 H 0.072 0.928 36 H 0.022 0.978 37 H 0.262 0.738 38 H 0.020 0.980 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.051 0.949 42 H 0.210 0.790 43 H 0.130 0.870 44 H 0.132 0.868 45 H 0.127 0.873 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.673 -6.116 22.325 25.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.044 3.956 3 H 0.105 0.895 4 N -0.313 5.313 5 C -0.011 4.011 6 C -0.158 4.158 7 C 0.000 4.000 8 N -0.329 5.329 9 C -0.387 4.387 10 H 0.103 0.897 11 C -0.176 4.176 12 N -0.553 5.553 13 Si 0.714 3.286 14 H -0.217 1.217 15 H -0.232 1.232 16 H -0.196 1.196 17 C 0.025 3.975 18 C -0.175 4.175 19 C -0.163 4.163 20 C -0.040 4.040 21 O -0.098 6.098 22 C 0.001 3.999 23 C -0.127 4.127 24 C -0.117 4.117 25 C -0.157 4.157 26 C -0.089 4.089 27 C -0.121 4.121 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.156 0.844 32 H 0.058 0.942 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.040 0.960 37 H 0.072 0.928 38 H 0.038 0.962 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.069 0.931 42 H 0.226 0.774 43 H 0.148 0.852 44 H 0.150 0.850 45 H 0.145 0.855 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.757 -6.218 22.467 25.674 hybrid contribution -1.050 1.216 0.134 1.612 sum -11.808 -5.002 22.601 25.985 Atomic orbital electron populations 1.22451 0.96343 1.02299 1.02265 1.19765 0.92035 0.97234 0.86529 0.89470 1.60582 1.56341 1.10450 1.03945 1.21452 0.97512 0.93357 0.88735 1.22021 0.96629 0.99219 0.97896 1.21351 0.99508 0.93236 0.85934 1.44359 1.20178 1.57486 1.10903 1.18925 1.14608 1.01348 1.03843 0.89738 1.25302 0.97047 0.97740 0.97481 1.69826 1.13555 1.30130 1.41780 0.86929 0.78951 0.84970 0.77741 1.21658 1.23210 1.19569 1.20963 0.88257 0.92490 0.95833 1.22305 1.00617 0.99190 0.95400 1.20975 1.07403 0.94674 0.93271 1.23732 0.98901 0.97380 0.83940 1.84023 1.70593 1.36742 1.18452 1.19633 1.01497 0.86008 0.92730 1.19924 1.04192 0.98570 0.89974 1.20894 0.98838 0.91992 0.99979 1.20759 1.01647 0.99556 0.93709 1.20305 0.98552 0.95159 0.94881 1.19812 1.03845 0.95343 0.93086 0.92137 0.92070 0.92358 0.84413 0.94168 0.91079 0.93271 0.91008 0.96034 0.92792 0.96182 0.91688 0.90982 0.93055 0.77395 0.85237 0.85002 0.85520 0.85746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 9.14 37.15 0.34 -1.37 16 2 C 0.15 1.79 2.92 -68.86 -0.20 1.59 16 3 H 0.09 1.12 7.30 -51.93 -0.38 0.75 16 4 N -0.68 -8.40 5.48 -100.91 -0.55 -8.95 16 5 C 0.10 1.47 2.23 -67.67 -0.15 1.32 16 6 C -0.12 -2.14 5.60 -26.61 -0.15 -2.29 16 7 C 0.13 2.77 4.19 -3.71 -0.02 2.75 16 8 N -0.61 -14.36 2.76 -172.05 -0.47 -14.83 16 9 C -0.26 -7.27 10.04 -15.06 -0.15 -7.42 16 10 H 0.09 2.53 8.06 -52.49 -0.42 2.10 16 11 C 0.02 0.67 5.25 -17.43 -0.09 0.58 16 12 N -0.91 -28.17 13.97 55.49 0.78 -27.39 16 13 Si 0.88 22.64 24.34 -169.99 -4.14 18.50 16 14 H -0.29 -7.19 6.69 56.52 0.38 -6.82 16 15 H -0.30 -7.91 7.11 56.52 0.40 -7.50 16 16 H -0.27 -6.77 6.47 56.52 0.37 -6.41 16 17 C 0.15 2.90 6.54 -3.49 -0.02 2.88 16 18 C -0.14 -2.10 5.35 -26.38 -0.14 -2.24 16 19 C -0.16 -1.93 5.50 -102.66 -0.56 -2.50 16 20 C 0.03 0.29 11.36 29.24 0.33 0.62 16 21 O -0.20 -2.47 10.58 3.90 0.04 -2.43 16 22 C 0.05 0.60 7.42 -38.47 -0.29 0.31 16 23 C -0.11 -1.06 10.07 -39.46 -0.40 -1.46 16 24 C -0.10 -0.83 10.01 -39.54 -0.40 -1.23 16 25 C -0.14 -1.23 9.98 -39.93 -0.40 -1.63 16 26 C -0.07 -0.75 10.05 -39.69 -0.40 -1.15 16 27 C -0.12 -1.46 6.38 -105.16 -0.67 -2.13 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.61 7.48 -51.93 -0.39 0.22 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.34 3.56 8.03 -39.30 -0.32 3.25 16 32 H 0.04 0.61 7.16 -51.93 -0.37 0.23 16 33 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.05 0.83 7.62 -51.93 -0.40 0.44 16 35 H 0.07 1.75 4.55 -51.93 -0.24 1.52 16 36 H 0.02 0.47 6.96 -51.93 -0.36 0.11 16 37 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 38 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 1.25 7.93 -51.93 -0.41 0.83 16 40 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.05 0.65 8.10 -51.93 -0.42 0.23 16 42 H 0.21 1.87 7.91 -52.49 -0.42 1.46 16 43 H 0.13 1.00 8.06 -52.48 -0.42 0.57 16 44 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 45 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 46 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 361.78 15.07 5.45 5.45 Total: -1.00 -31.90 361.78 -9.38 -41.28 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -7.12 Total: 1.74 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -3.36 Total: -13.37 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: -0.25 Total: -51.18 kcal Atomic # 8 Polarization: -2.47 SS G_CDS: 0.04 Total: -2.43 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.14 Total: 18.50 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.90 -9.38 -41.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925003868.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.602 kcal (2) G-P(sol) polarization free energy of solvation -31.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds