Wall clock time and date at job start Tue Mar 31 2020 10:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08996 * 109.47347 * 2 1 4 4 N 1.46903 * 109.47137 * 239.99574 * 2 1 3 5 5 C 1.46901 * 110.99651 * 85.81180 * 4 2 1 6 6 C 1.53041 * 109.46399 * 87.52127 * 5 4 2 7 7 C 1.53187 * 109.31375 * 181.37273 * 6 5 4 8 8 N 1.46929 * 108.77446 * 305.36372 * 7 6 5 9 9 C 1.36945 * 120.63141 * 233.58426 * 8 7 6 10 10 H 1.07993 * 119.99874 * 151.77694 * 9 8 7 11 11 C 1.38809 * 119.99923 * 331.78797 * 9 8 7 12 12 N 1.31612 * 120.00169 * 160.34372 * 11 9 8 13 13 Si 1.86803 * 119.99945 * 340.61364 * 11 9 8 14 14 H 1.48494 * 109.47075 * 94.12585 * 13 11 9 15 15 H 1.48500 * 109.47021 * 214.12746 * 13 11 9 16 16 H 1.48501 * 109.47288 * 334.12535 * 13 11 9 17 17 C 1.46924 * 118.73945 * 53.86229 * 8 7 6 18 18 C 1.53042 * 109.44742 * 207.58252 * 5 4 2 19 19 C 1.50707 * 109.47267 * 119.99903 * 2 1 3 20 20 C 1.33993 * 126.90686 * 99.69002 * 19 2 1 21 21 O 1.34456 * 110.15115 * 179.83022 * 20 19 2 22 22 C 1.34806 * 110.88867 * 0.45150 * 21 20 19 23 23 C 1.38942 * 133.49699 * 179.69675 * 22 21 20 24 24 C 1.37844 * 119.81957 * 180.02562 * 23 22 21 25 25 C 1.38748 * 120.68647 * 0.02562 * 24 23 22 26 26 C 1.36740 * 120.41564 * 359.94439 * 25 24 23 27 27 C 1.39403 * 119.71455 * 0.06905 * 26 25 24 28 28 H 1.09000 * 109.47115 * 304.63425 * 1 2 3 29 29 H 1.08993 * 109.47349 * 64.63632 * 1 2 3 30 30 H 1.09003 * 109.46981 * 184.63827 * 1 2 3 31 31 H 1.00893 * 110.99917 * 321.85894 * 4 2 1 32 32 H 1.08999 * 109.46097 * 327.54447 * 5 4 2 33 33 H 1.08996 * 109.49407 * 61.42074 * 6 5 4 34 34 H 1.09002 * 109.49394 * 301.32029 * 6 5 4 35 35 H 1.09004 * 109.58964 * 185.57886 * 7 6 5 36 36 H 1.09002 * 109.70487 * 65.21916 * 7 6 5 37 37 H 0.97000 * 120.00386 * 179.97438 * 12 11 9 38 38 H 1.09002 * 109.59080 * 65.92756 * 17 8 7 39 39 H 1.09002 * 109.59021 * 186.35071 * 17 8 7 40 40 H 1.08996 * 109.49555 * 298.56891 * 18 5 4 41 41 H 1.08999 * 109.49879 * 58.67048 * 18 5 4 42 42 H 1.07999 * 124.92193 * 359.97438 * 20 19 2 43 43 H 1.08003 * 120.08742 * 0.02562 * 23 22 21 44 44 H 1.07996 * 119.65791 * 179.97438 * 24 23 22 45 45 H 1.07992 * 119.79099 * 179.97438 * 25 24 23 46 46 H 1.08000 * 120.14221 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.1006 0.2271 -2.3421 6 6 3.4633 0.9236 -2.3404 7 6 3.5312 1.9068 -3.5132 8 7 3.2247 1.1836 -4.7549 9 6 4.0821 1.2340 -5.8215 10 1 4.1279 0.4090 -6.5169 11 6 4.8925 2.3453 -6.0086 12 7 5.9648 2.2577 -6.7667 13 14 4.4652 3.9633 -5.1784 14 1 5.1952 4.0661 -3.8894 15 1 4.8577 5.0912 -6.0610 16 1 3.0031 4.0187 -4.9250 17 6 1.9778 0.4104 -4.8327 18 6 1.9300 -0.5606 -3.6431 19 6 2.0323 -0.7104 1.2305 20 6 2.4706 -1.9743 1.3074 21 8 2.8417 -2.2600 2.5677 22 6 2.6540 -1.1980 3.3765 23 6 2.8672 -0.9785 4.7318 24 6 2.5681 0.2491 5.2828 25 6 2.0546 1.2714 4.4978 26 6 1.8379 1.0762 3.1618 27 6 2.1341 -0.1588 2.5870 28 1 -0.3633 0.5841 0.8456 29 1 -0.3633 0.4402 -0.9285 30 1 -0.3633 -1.0243 0.0831 31 1 1.4417 -1.4903 -1.4175 32 1 1.3108 0.9741 -2.2637 33 1 4.2526 0.1790 -2.4437 34 1 3.5938 1.4653 -1.4036 35 1 4.5328 2.3323 -3.5759 36 1 2.8036 2.7050 -3.3661 37 1 6.5309 3.0344 -6.8978 38 1 1.1246 1.0874 -4.7898 39 1 1.9541 -0.1518 -5.7662 40 1 2.7338 -1.2911 -3.7342 41 1 0.9693 -1.0752 -3.6336 42 1 2.5208 -2.6629 0.4769 43 1 3.2662 -1.7677 5.3519 44 1 2.7345 0.4167 6.3366 45 1 1.8250 2.2274 4.9445 46 1 1.4384 1.8751 2.5548 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925003868.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:39 Heat of formation + Delta-G solvation = 33.775427 kcal Electronic energy + Delta-G solvation = -26077.292064 eV Core-core repulsion = 22546.867097 eV Total energy + Delta-G solvation = -3530.424967 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.37077 -39.96427 -38.74265 -37.69677 -34.96295 -33.54089 -32.08081 -31.91240 -31.24688 -29.95566 -29.47730 -26.35755 -24.70693 -24.34283 -24.02745 -23.22543 -22.74405 -21.03036 -20.53143 -18.81252 -18.19276 -17.98704 -17.37602 -17.04053 -16.61150 -16.22384 -15.97730 -15.72951 -15.37480 -15.24850 -14.99371 -14.73915 -14.59877 -14.35388 -14.10996 -13.89301 -13.54867 -13.48449 -13.33747 -13.20648 -12.95705 -12.68914 -12.62428 -12.45542 -12.20666 -12.05313 -11.94987 -11.82091 -11.61014 -11.34942 -11.19139 -10.82544 -10.72174 -9.57498 -9.38964 -9.02788 -8.92331 -8.17083 -5.49490 0.02305 0.42511 1.29128 1.38855 1.45265 1.48301 1.93952 2.41106 2.78759 2.98700 3.05893 3.37637 3.59572 3.71119 3.92510 3.98734 4.06211 4.14254 4.21986 4.26566 4.36436 4.40179 4.42735 4.45265 4.51965 4.52977 4.68098 4.71238 4.73763 4.81318 4.88011 4.94353 5.01099 5.03187 5.11632 5.18176 5.20764 5.31240 5.31708 5.38852 5.52045 5.54528 5.55678 5.77245 5.87721 6.07615 6.13265 6.29396 6.54376 6.92584 7.62791 8.03618 9.03102 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.019571 B = 0.003084 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.361025 B = 9078.210782 C = 9607.165087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.161 3.839 3 H 0.074 0.926 4 N -0.682 5.682 5 C 0.110 3.890 6 C -0.109 4.109 7 C 0.122 3.878 8 N -0.620 5.620 9 C -0.247 4.247 10 H 0.052 0.948 11 C -0.037 4.037 12 N -0.959 5.959 13 Si 0.947 3.053 14 H -0.280 1.280 15 H -0.311 1.311 16 H -0.257 1.257 17 C 0.144 3.856 18 C -0.123 4.123 19 C -0.173 4.173 20 C 0.018 3.982 21 O -0.210 6.210 22 C 0.020 3.980 23 C -0.119 4.119 24 C -0.094 4.094 25 C -0.137 4.137 26 C -0.088 4.088 27 C -0.142 4.142 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.352 0.648 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.043 0.957 36 H 0.032 0.968 37 H 0.261 0.739 38 H 0.037 0.963 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.091 0.909 42 H 0.227 0.773 43 H 0.147 0.853 44 H 0.165 0.835 45 H 0.154 0.846 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.927 -5.780 25.172 29.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.051 3.949 3 H 0.092 0.908 4 N -0.313 5.313 5 C 0.000 4.000 6 C -0.149 4.149 7 C -0.003 4.003 8 N -0.345 5.345 9 C -0.376 4.376 10 H 0.070 0.930 11 C -0.232 4.232 12 N -0.606 5.606 13 Si 0.777 3.223 14 H -0.207 1.207 15 H -0.240 1.240 16 H -0.181 1.181 17 C 0.018 3.982 18 C -0.162 4.162 19 C -0.175 4.175 20 C -0.046 4.046 21 O -0.112 6.112 22 C -0.027 4.027 23 C -0.137 4.137 24 C -0.112 4.112 25 C -0.155 4.155 26 C -0.106 4.106 27 C -0.143 4.143 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.172 0.828 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.050 0.950 37 H 0.070 0.930 38 H 0.055 0.945 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.109 0.891 42 H 0.243 0.757 43 H 0.164 0.836 44 H 0.183 0.817 45 H 0.171 0.829 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -13.064 -5.907 25.357 29.129 hybrid contribution -0.361 1.031 -0.676 1.285 sum -13.425 -4.876 24.681 28.516 Atomic orbital electron populations 1.22368 0.94755 1.02935 1.02514 1.19685 0.93163 0.96226 0.85820 0.90801 1.60380 1.57362 1.10387 1.03213 1.21198 0.95568 0.93759 0.89438 1.21860 0.98220 0.98151 0.96640 1.21365 0.98084 0.94295 0.86551 1.44504 1.21318 1.58318 1.10381 1.18889 1.14592 1.00030 1.04119 0.93015 1.25944 0.97100 1.01059 0.99076 1.69960 1.15062 1.30883 1.44689 0.85888 0.79301 0.80311 0.76840 1.20694 1.23959 1.18126 1.21194 0.86612 0.92921 0.97428 1.22141 1.02247 0.97979 0.93841 1.21081 1.07955 0.94997 0.93475 1.24104 0.98647 0.97772 0.84083 1.83995 1.70997 1.37293 1.18959 1.20096 1.02707 0.86112 0.93766 1.20321 1.04170 0.99828 0.89388 1.21341 0.97232 0.91069 1.01533 1.21160 1.00358 1.00794 0.93155 1.20561 0.99190 0.94918 0.95940 1.20076 1.04739 0.96174 0.93345 0.91852 0.91778 0.91550 0.82768 0.93191 0.93196 0.92014 0.93853 0.94970 0.93011 0.94526 0.92423 0.92492 0.89085 0.75687 0.83571 0.81734 0.82864 0.84944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 9.14 71.98 0.66 -2.14 16 2 C 0.16 3.37 2.92 44.17 0.13 3.50 16 3 H 0.07 1.75 7.30 -2.39 -0.02 1.74 16 4 N -0.68 -15.00 5.48 -473.16 -2.59 -17.59 16 5 C 0.11 2.99 2.23 44.94 0.10 3.09 16 6 C -0.11 -3.81 5.60 30.67 0.17 -3.64 16 7 C 0.12 5.25 4.19 86.36 0.36 5.61 16 8 N -0.62 -29.17 2.76 -698.25 -1.92 -31.10 16 9 C -0.25 -14.18 10.04 84.03 0.84 -13.34 16 10 H 0.05 3.24 8.06 -2.91 -0.02 3.22 16 11 C -0.04 -2.23 5.25 84.86 0.45 -1.78 16 12 N -0.96 -61.52 13.97 21.65 0.30 -61.22 16 13 Si 0.95 47.47 24.34 68.60 1.67 49.14 16 14 H -0.28 -13.47 6.69 99.48 0.67 -12.80 16 15 H -0.31 -15.76 7.11 99.48 0.71 -15.06 16 16 H -0.26 -12.14 6.47 99.48 0.64 -11.50 16 17 C 0.14 5.28 6.54 86.51 0.57 5.84 16 18 C -0.12 -3.48 5.35 30.82 0.16 -3.31 16 19 C -0.17 -3.93 5.50 -18.59 -0.10 -4.03 16 20 C 0.02 0.40 11.36 66.85 0.76 1.16 16 21 O -0.21 -5.20 10.58 -8.97 -0.09 -5.29 16 22 C 0.02 0.48 7.42 22.99 0.17 0.65 16 23 C -0.12 -2.14 10.07 22.35 0.23 -1.92 16 24 C -0.09 -1.32 10.01 22.30 0.22 -1.09 16 25 C -0.14 -2.06 9.98 22.04 0.22 -1.84 16 26 C -0.09 -1.71 10.05 22.20 0.22 -1.49 16 27 C -0.14 -3.33 6.38 -20.21 -0.13 -3.46 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.06 1.05 7.48 -2.39 -0.02 1.03 16 30 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.35 6.24 8.03 -89.70 -0.72 5.52 16 32 H 0.05 1.31 7.16 -2.39 -0.02 1.30 16 33 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.06 2.00 7.62 -2.39 -0.02 1.98 16 35 H 0.04 2.10 4.55 -2.38 -0.01 2.09 16 36 H 0.03 1.33 6.96 -2.39 -0.02 1.31 16 37 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 38 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.06 2.17 7.93 -2.39 -0.02 2.15 16 40 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.09 1.91 8.10 -2.39 -0.02 1.89 16 42 H 0.23 3.73 7.91 -2.91 -0.02 3.71 16 43 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 44 H 0.17 1.15 8.06 -2.91 -0.02 1.13 16 45 H 0.15 1.42 8.06 -2.91 -0.02 1.39 16 46 H 0.13 2.22 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -71.43 361.78 2.54 -68.89 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.15 Total: 15.35 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: 5.03 Total: -18.19 kcal Atomic # 7 Polarization: -105.69 SS G_CDS: -4.21 Total: -109.90 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: -0.09 Total: -5.29 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 1.67 Total: 49.14 kcal Total: -71.43 2.54 -68.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925003868.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.667 kcal (2) G-P(sol) polarization free energy of solvation -71.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds