Wall clock time and date at job start Tue Mar 31 2020 10:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47275 * 2 1 4 4 N 1.46904 * 109.46950 * 240.00562 * 2 1 3 5 5 C 1.46905 * 110.99976 * 84.99860 * 4 2 1 6 6 C 1.52996 * 109.47056 * 180.02562 * 5 4 2 7 7 C 1.53005 * 109.47428 * 300.00250 * 6 5 4 8 8 C 1.53013 * 109.47188 * 59.99770 * 6 5 4 9 9 C 1.50700 * 109.47292 * 179.97438 * 6 5 4 10 10 H 1.08001 * 119.99876 * 359.97438 * 9 6 5 11 11 C 1.37877 * 120.00127 * 180.02562 * 9 6 5 12 12 N 1.31514 * 120.00001 * 359.97438 * 11 9 6 13 13 Si 1.86797 * 120.00284 * 180.02562 * 11 9 6 14 14 H 1.48498 * 109.47051 * 89.99234 * 13 11 9 15 15 H 1.48496 * 109.47238 * 210.00004 * 13 11 9 16 16 H 1.48504 * 109.46635 * 329.99701 * 13 11 9 17 17 C 1.50695 * 109.47542 * 120.00622 * 2 1 3 18 18 C 1.35235 * 126.65691 * 260.00256 * 17 2 1 19 19 C 1.42291 * 103.93121 * 179.97438 * 18 17 2 20 20 C 1.48436 * 126.93500 * 179.97438 * 19 18 17 21 21 C 1.39327 * 120.11910 * 359.72949 * 20 19 18 22 22 C 1.38020 * 119.87320 * 179.76349 * 21 20 19 23 23 C 1.38320 * 120.12716 * 0.48766 * 22 21 20 24 24 C 1.38319 * 120.23438 * 359.78597 * 23 22 21 25 25 C 1.38026 * 120.12163 * 359.95378 * 24 23 22 26 26 N 1.30983 * 106.12688 * 359.97438 * 19 18 17 27 27 O 1.20904 * 111.42788 * 0.02562 * 26 19 18 28 28 H 1.09004 * 109.46993 * 299.99437 * 1 2 3 29 29 H 1.09003 * 109.47678 * 59.99036 * 1 2 3 30 30 H 1.08994 * 109.47512 * 179.97438 * 1 2 3 31 31 H 1.00898 * 110.99824 * 208.94964 * 4 2 1 32 32 H 1.09002 * 109.46776 * 299.99821 * 5 4 2 33 33 H 1.08999 * 109.46903 * 60.00186 * 5 4 2 34 34 H 1.09004 * 109.47118 * 59.99276 * 7 6 5 35 35 H 1.08999 * 109.47455 * 179.97438 * 7 6 5 36 36 H 1.09004 * 109.46536 * 299.99947 * 7 6 5 37 37 H 1.08997 * 109.46462 * 60.00036 * 8 6 5 38 38 H 1.09005 * 109.46821 * 180.02562 * 8 6 5 39 39 H 1.09000 * 109.46675 * 299.99965 * 8 6 5 40 40 H 0.97007 * 120.00299 * 179.97438 * 12 11 9 41 41 H 1.08001 * 128.03678 * 359.70854 * 18 17 2 42 42 H 1.08000 * 120.06060 * 0.02562 * 21 20 19 43 43 H 1.08003 * 119.93452 * 180.24801 * 22 21 20 44 44 H 1.07990 * 119.88082 * 179.76216 * 23 22 21 45 45 H 1.08004 * 119.93915 * 179.97438 * 24 23 22 46 46 H 1.08002 * 120.05527 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 2.0823 0.2228 -2.3470 6 6 2.5948 -0.5328 -3.5746 7 6 3.9920 -1.0861 -3.2865 8 6 1.6449 -1.6887 -3.8954 9 6 2.6586 0.4058 -4.7518 10 1 2.3628 1.4381 -4.6361 11 6 3.0937 -0.0534 -5.9769 12 7 3.4535 -1.3104 -6.1180 13 14 3.1735 1.1103 -7.4360 14 1 4.5100 1.7559 -7.4817 15 1 2.9488 0.3477 -8.6902 16 1 2.1249 2.1524 -7.2958 17 6 2.0324 -0.7105 1.2303 18 6 2.4791 -0.1345 2.3694 19 6 2.8262 -1.2380 3.1980 20 6 3.3762 -1.1809 4.5755 21 6 3.6087 0.0502 5.1850 22 6 4.1157 0.0974 6.4678 23 6 4.4025 -1.0744 7.1445 24 6 4.1790 -2.2992 6.5419 25 6 3.6672 -2.3581 5.2614 26 7 2.5622 -2.3144 2.4998 27 8 2.1224 -2.0362 1.4085 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 2.9172 -1.1204 -1.0289 32 1 1.0869 0.6165 -2.5525 33 1 2.7588 1.0464 -2.1182 34 1 3.9454 -1.7651 -2.4350 35 1 4.3569 -1.6248 -4.1609 36 1 4.6687 -0.2627 -3.0579 37 1 0.6496 -1.2945 -4.1007 38 1 2.0103 -2.2273 -4.7698 39 1 1.5984 -2.3677 -3.0440 40 1 3.7592 -1.6337 -6.9800 41 1 2.5586 0.9185 2.5959 42 1 3.3885 0.9658 4.6562 43 1 4.2924 1.0512 6.9427 44 1 4.8027 -1.0328 8.1466 45 1 4.4050 -3.2112 7.0745 46 1 3.4927 -3.3150 4.7921 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926568441.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:21 Heat of formation + Delta-G solvation = 79.298071 kcal Electronic energy + Delta-G solvation = -25372.596044 eV Core-core repulsion = 21844.145087 eV Total energy + Delta-G solvation = -3528.450957 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.89603 -39.36832 -37.52614 -35.13386 -34.48704 -32.14512 -31.31954 -30.73284 -30.29815 -28.79820 -25.59455 -25.26029 -24.65202 -24.33177 -23.40105 -22.16449 -22.04754 -19.90431 -18.51370 -17.64983 -17.51122 -16.73817 -16.08963 -15.73871 -15.30809 -15.04482 -14.74859 -14.44522 -14.01807 -13.78467 -13.64633 -13.45121 -13.28589 -12.89392 -12.65822 -12.35954 -11.94892 -11.80871 -11.69952 -11.57681 -11.41100 -11.19132 -11.06969 -10.96394 -10.91678 -10.63466 -10.55971 -10.18623 -10.05975 -9.53735 -9.39348 -9.28143 -9.08802 -8.74870 -8.63860 -8.29977 -7.88218 -5.91663 -4.02424 0.61346 1.07466 1.51061 2.35313 3.04713 3.30774 3.38185 3.40501 3.59057 3.83669 4.14757 4.42346 4.57219 4.63838 4.72747 4.78276 4.94605 5.04843 5.17036 5.18240 5.33776 5.34504 5.37949 5.45956 5.57498 5.71629 5.81014 5.85683 5.99874 6.13773 6.17335 6.22737 6.24776 6.27881 6.39645 6.60757 6.69379 6.86864 7.05610 7.15499 7.37157 7.43003 7.62502 7.75214 7.81392 7.81854 8.19564 8.22563 8.33885 8.54079 8.98838 9.62664 11.08813 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.027541 B = 0.002364 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.440474 B =11841.751978 C =11905.871363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.161 3.839 3 H 0.072 0.928 4 N -0.677 5.677 5 C 0.074 3.926 6 C 0.070 3.930 7 C -0.134 4.134 8 C -0.120 4.120 9 C -0.507 4.507 10 H 0.052 0.948 11 C 0.065 3.935 12 N -0.883 5.883 13 Si 0.889 3.111 14 H -0.283 1.283 15 H -0.287 1.287 16 H -0.276 1.276 17 C -0.009 4.009 18 C -0.228 4.228 19 C 0.049 3.951 20 C -0.015 4.015 21 C -0.096 4.096 22 C -0.120 4.120 23 C -0.114 4.114 24 C -0.120 4.120 25 C -0.094 4.094 26 N -0.359 5.359 27 O 0.124 5.876 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.344 0.656 32 H 0.061 0.939 33 H 0.017 0.983 34 H 0.011 0.989 35 H 0.084 0.916 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.074 0.926 39 H 0.022 0.978 40 H 0.258 0.742 41 H 0.171 0.829 42 H 0.127 0.873 43 H 0.127 0.873 44 H 0.124 0.876 45 H 0.126 0.874 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.779 2.379 23.507 23.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.050 3.950 3 H 0.090 0.910 4 N -0.311 5.311 5 C -0.054 4.054 6 C 0.069 3.931 7 C -0.192 4.192 8 C -0.178 4.178 9 C -0.546 4.546 10 H 0.070 0.930 11 C -0.136 4.136 12 N -0.522 5.522 13 Si 0.717 3.283 14 H -0.209 1.209 15 H -0.213 1.213 16 H -0.201 1.201 17 C -0.073 4.073 18 C -0.251 4.251 19 C -0.107 4.107 20 C -0.016 4.016 21 C -0.115 4.115 22 C -0.138 4.138 23 C -0.132 4.132 24 C -0.138 4.138 25 C -0.113 4.113 26 N -0.059 5.059 27 O 0.054 5.946 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.164 0.836 32 H 0.080 0.920 33 H 0.035 0.965 34 H 0.030 0.970 35 H 0.103 0.897 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.093 0.907 39 H 0.041 0.959 40 H 0.068 0.932 41 H 0.189 0.811 42 H 0.145 0.855 43 H 0.145 0.855 44 H 0.142 0.858 45 H 0.144 0.856 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.223 0.666 23.405 23.446 hybrid contribution 0.916 2.077 -0.539 2.333 sum -0.307 2.743 22.866 23.032 Atomic orbital electron populations 1.21822 0.92757 1.03258 1.01779 1.20216 0.96660 0.94220 0.83903 0.91020 1.60774 1.34155 1.33518 1.02675 1.22277 0.99621 0.92990 0.90499 1.18093 0.91852 0.93246 0.89912 1.21856 0.98773 0.98446 1.00109 1.21651 0.97281 0.98377 1.00481 1.21080 1.43687 0.95793 0.94008 0.92969 1.24888 0.95265 0.94978 0.98468 1.69836 1.44471 1.13914 1.23990 0.86657 0.78217 0.81006 0.82430 1.20903 1.21307 1.20069 1.24711 1.00301 0.83517 0.98722 1.22390 1.08053 1.01019 0.93589 1.21917 1.03262 0.89297 0.96210 1.17738 1.00157 0.94125 0.89549 1.21141 0.98497 0.96699 0.95194 1.21082 0.99577 0.98641 0.94525 1.21272 0.99415 0.92528 1.00019 1.21122 0.99555 0.98168 0.94971 1.21270 0.97509 0.97939 0.94583 1.74134 1.14859 1.23403 0.93501 1.84876 1.59729 1.23669 1.26327 0.92765 0.90985 0.91372 0.83627 0.92004 0.96514 0.97033 0.89724 0.96222 0.96217 0.90732 0.95939 0.93160 0.81140 0.85472 0.85490 0.85783 0.85570 0.85331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.40 37.16 0.35 -1.37 16 2 C 0.16 2.20 3.09 -68.87 -0.21 1.99 16 3 H 0.07 0.91 7.80 -51.93 -0.40 0.50 16 4 N -0.68 -11.53 5.51 -107.95 -0.60 -12.12 16 5 C 0.07 1.45 4.38 -3.82 -0.02 1.44 16 6 C 0.07 1.64 0.57 -155.65 -0.09 1.55 16 7 C -0.13 -3.14 7.92 37.16 0.29 -2.84 16 8 C -0.12 -2.88 8.09 37.16 0.30 -2.58 16 9 C -0.51 -13.32 8.01 -34.44 -0.28 -13.60 16 10 H 0.05 1.36 7.74 -52.49 -0.41 0.96 16 11 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 12 N -0.88 -24.28 9.35 55.43 0.52 -23.76 16 13 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 C -0.01 -0.12 5.96 -35.38 -0.21 -0.33 16 18 C -0.23 -2.76 10.45 -39.10 -0.41 -3.17 16 19 C 0.05 0.66 7.06 -82.47 -0.58 0.08 16 20 C -0.01 -0.17 5.88 -104.89 -0.62 -0.79 16 21 C -0.10 -0.90 9.60 -39.26 -0.38 -1.28 16 22 C -0.12 -0.94 10.03 -39.63 -0.40 -1.34 16 23 C -0.11 -0.86 10.04 -39.52 -0.40 -1.26 16 24 C -0.12 -1.03 10.03 -39.63 -0.40 -1.43 16 25 C -0.09 -1.02 9.70 -39.26 -0.38 -1.40 16 26 N -0.36 -5.51 11.82 33.32 0.39 -5.12 16 27 O 0.12 1.93 11.18 17.12 0.19 2.12 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.92 7.45 -51.93 -0.39 0.53 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.34 6.06 6.39 -39.29 -0.25 5.81 16 32 H 0.06 1.21 7.44 -51.93 -0.39 0.82 16 33 H 0.02 0.33 8.06 -51.93 -0.42 -0.09 16 34 H 0.01 0.23 6.57 -51.93 -0.34 -0.11 16 35 H 0.08 2.21 6.07 -51.93 -0.32 1.90 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 1.97 6.07 -51.93 -0.32 1.66 16 39 H 0.02 0.49 7.60 -51.93 -0.39 0.10 16 40 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 41 H 0.17 1.55 7.58 -52.49 -0.40 1.15 16 42 H 0.13 0.97 7.23 -52.49 -0.38 0.59 16 43 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 44 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 45 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 46 H 0.13 1.42 7.90 -52.49 -0.41 1.01 16 LS Contribution 373.04 15.07 5.62 5.62 Total: -1.00 -28.54 373.04 -9.31 -37.84 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -6.91 Total: 4.25 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: -3.51 Total: -24.68 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: 0.32 Total: -41.00 kcal Atomic # 8 Polarization: 1.93 SS G_CDS: 0.19 Total: 2.12 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -28.54 -9.31 -37.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926568441.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.141 kcal (2) G-P(sol) polarization free energy of solvation -28.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds