Wall clock time and date at job start Tue Mar 31 2020 10:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47275 * 2 1 4 4 N 1.46904 * 109.46950 * 240.00562 * 2 1 3 5 5 C 1.46905 * 110.99976 * 84.99860 * 4 2 1 6 6 C 1.52996 * 109.47056 * 180.02562 * 5 4 2 7 7 C 1.53005 * 109.47428 * 300.00250 * 6 5 4 8 8 C 1.53013 * 109.47188 * 59.99770 * 6 5 4 9 9 C 1.50700 * 109.47292 * 179.97438 * 6 5 4 10 10 H 1.08001 * 119.99876 * 359.97438 * 9 6 5 11 11 C 1.37877 * 120.00127 * 180.02562 * 9 6 5 12 12 N 1.31514 * 120.00001 * 359.97438 * 11 9 6 13 13 Si 1.86797 * 120.00284 * 180.02562 * 11 9 6 14 14 H 1.48498 * 109.47051 * 89.99234 * 13 11 9 15 15 H 1.48496 * 109.47238 * 210.00004 * 13 11 9 16 16 H 1.48504 * 109.46635 * 329.99701 * 13 11 9 17 17 C 1.50695 * 109.47542 * 120.00622 * 2 1 3 18 18 C 1.35235 * 126.65691 * 260.00256 * 17 2 1 19 19 C 1.42291 * 103.93121 * 179.97438 * 18 17 2 20 20 C 1.48436 * 126.93500 * 179.97438 * 19 18 17 21 21 C 1.39327 * 120.11910 * 359.72949 * 20 19 18 22 22 C 1.38020 * 119.87320 * 179.76349 * 21 20 19 23 23 C 1.38320 * 120.12716 * 0.48766 * 22 21 20 24 24 C 1.38319 * 120.23438 * 359.78597 * 23 22 21 25 25 C 1.38026 * 120.12163 * 359.95378 * 24 23 22 26 26 N 1.30983 * 106.12688 * 359.97438 * 19 18 17 27 27 O 1.20904 * 111.42788 * 0.02562 * 26 19 18 28 28 H 1.09004 * 109.46993 * 299.99437 * 1 2 3 29 29 H 1.09003 * 109.47678 * 59.99036 * 1 2 3 30 30 H 1.08994 * 109.47512 * 179.97438 * 1 2 3 31 31 H 1.00898 * 110.99824 * 208.94964 * 4 2 1 32 32 H 1.09002 * 109.46776 * 299.99821 * 5 4 2 33 33 H 1.08999 * 109.46903 * 60.00186 * 5 4 2 34 34 H 1.09004 * 109.47118 * 59.99276 * 7 6 5 35 35 H 1.08999 * 109.47455 * 179.97438 * 7 6 5 36 36 H 1.09004 * 109.46536 * 299.99947 * 7 6 5 37 37 H 1.08997 * 109.46462 * 60.00036 * 8 6 5 38 38 H 1.09005 * 109.46821 * 180.02562 * 8 6 5 39 39 H 1.09000 * 109.46675 * 299.99965 * 8 6 5 40 40 H 0.97007 * 120.00299 * 179.97438 * 12 11 9 41 41 H 1.08001 * 128.03678 * 359.70854 * 18 17 2 42 42 H 1.08000 * 120.06060 * 0.02562 * 21 20 19 43 43 H 1.08003 * 119.93452 * 180.24801 * 22 21 20 44 44 H 1.07990 * 119.88082 * 179.76216 * 23 22 21 45 45 H 1.08004 * 119.93915 * 179.97438 * 24 23 22 46 46 H 1.08002 * 120.05527 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 2.0823 0.2228 -2.3470 6 6 2.5948 -0.5328 -3.5746 7 6 3.9920 -1.0861 -3.2865 8 6 1.6449 -1.6887 -3.8954 9 6 2.6586 0.4058 -4.7518 10 1 2.3628 1.4381 -4.6361 11 6 3.0937 -0.0534 -5.9769 12 7 3.4535 -1.3104 -6.1180 13 14 3.1735 1.1103 -7.4360 14 1 4.5100 1.7559 -7.4817 15 1 2.9488 0.3477 -8.6902 16 1 2.1249 2.1524 -7.2958 17 6 2.0324 -0.7105 1.2303 18 6 2.4791 -0.1345 2.3694 19 6 2.8262 -1.2380 3.1980 20 6 3.3762 -1.1809 4.5755 21 6 3.6087 0.0502 5.1850 22 6 4.1157 0.0974 6.4678 23 6 4.4025 -1.0744 7.1445 24 6 4.1790 -2.2992 6.5419 25 6 3.6672 -2.3581 5.2614 26 7 2.5622 -2.3144 2.4998 27 8 2.1224 -2.0362 1.4085 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 2.9172 -1.1204 -1.0289 32 1 1.0869 0.6165 -2.5525 33 1 2.7588 1.0464 -2.1182 34 1 3.9454 -1.7651 -2.4350 35 1 4.3569 -1.6248 -4.1609 36 1 4.6687 -0.2627 -3.0579 37 1 0.6496 -1.2945 -4.1007 38 1 2.0103 -2.2273 -4.7698 39 1 1.5984 -2.3677 -3.0440 40 1 3.7592 -1.6337 -6.9800 41 1 2.5586 0.9185 2.5959 42 1 3.3885 0.9658 4.6562 43 1 4.2924 1.0512 6.9427 44 1 4.8027 -1.0328 8.1466 45 1 4.4050 -3.2112 7.0745 46 1 3.4927 -3.3150 4.7921 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926568441.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:20 Heat of formation + Delta-G solvation = 65.437399 kcal Electronic energy + Delta-G solvation = -25373.197088 eV Core-core repulsion = 21844.145087 eV Total energy + Delta-G solvation = -3529.052001 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.92659 -40.04041 -39.01243 -36.67742 -35.42502 -33.75379 -32.22850 -31.79124 -31.22695 -30.03862 -27.49988 -27.22735 -26.11743 -25.20887 -24.39456 -23.19297 -22.87059 -20.82237 -20.30733 -18.75650 -18.58718 -17.74573 -17.48601 -16.98624 -16.53595 -16.17454 -16.07176 -15.53817 -15.29994 -14.85776 -14.47925 -14.37767 -14.32092 -14.20484 -14.01655 -13.95492 -13.35974 -13.08188 -12.97192 -12.76586 -12.72085 -12.59526 -12.45152 -12.29252 -12.20974 -12.03764 -11.99455 -11.86976 -11.80869 -11.28165 -10.99221 -10.57536 -10.46063 -10.32178 -9.93870 -9.53660 -9.25559 -7.93957 -6.10851 -0.17263 0.41909 0.51859 1.44181 1.46635 1.48185 1.54657 2.04284 2.48330 2.89055 2.96672 3.10349 3.28561 3.47510 3.88187 4.01354 4.07887 4.14047 4.23010 4.27177 4.34533 4.41162 4.52547 4.58900 4.65509 4.68175 4.82866 4.87850 4.89091 4.96624 5.02388 5.07579 5.09106 5.19151 5.28995 5.38465 5.47141 5.48508 5.50846 5.53635 5.57200 5.72801 5.79276 5.98248 6.12694 6.22347 6.34336 6.45962 6.56934 6.99225 7.20599 7.56889 9.04259 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.027541 B = 0.002364 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.440474 B =11841.751978 C =11905.871363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.165 3.835 3 H 0.091 0.909 4 N -0.684 5.684 5 C 0.090 3.910 6 C 0.059 3.941 7 C -0.123 4.123 8 C -0.107 4.107 9 C -0.521 4.521 10 H 0.050 0.950 11 C 0.019 3.981 12 N -0.905 5.905 13 Si 0.945 3.055 14 H -0.280 1.280 15 H -0.289 1.289 16 H -0.270 1.270 17 C -0.019 4.019 18 C -0.216 4.216 19 C 0.049 3.951 20 C -0.046 4.046 21 C -0.099 4.099 22 C -0.120 4.120 23 C -0.108 4.108 24 C -0.125 4.125 25 C -0.115 4.115 26 N -0.389 5.389 27 O 0.096 5.904 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.339 0.661 32 H 0.063 0.937 33 H 0.019 0.981 34 H 0.027 0.973 35 H 0.054 0.946 36 H 0.018 0.982 37 H 0.015 0.985 38 H 0.045 0.955 39 H 0.031 0.969 40 H 0.256 0.744 41 H 0.204 0.796 42 H 0.145 0.855 43 H 0.158 0.842 44 H 0.155 0.845 45 H 0.145 0.855 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.591 4.636 25.963 26.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.054 3.946 3 H 0.109 0.891 4 N -0.318 5.318 5 C -0.039 4.039 6 C 0.059 3.941 7 C -0.181 4.181 8 C -0.165 4.165 9 C -0.560 4.560 10 H 0.069 0.931 11 C -0.180 4.180 12 N -0.545 5.545 13 Si 0.772 3.228 14 H -0.206 1.206 15 H -0.215 1.215 16 H -0.195 1.195 17 C -0.083 4.083 18 C -0.237 4.237 19 C -0.107 4.107 20 C -0.047 4.047 21 C -0.118 4.118 22 C -0.137 4.137 23 C -0.127 4.127 24 C -0.143 4.143 25 C -0.134 4.134 26 N -0.093 5.093 27 O 0.030 5.970 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.158 0.842 32 H 0.081 0.919 33 H 0.037 0.963 34 H 0.046 0.954 35 H 0.073 0.927 36 H 0.038 0.962 37 H 0.034 0.966 38 H 0.064 0.936 39 H 0.050 0.950 40 H 0.065 0.935 41 H 0.221 0.779 42 H 0.162 0.838 43 H 0.175 0.825 44 H 0.172 0.828 45 H 0.163 0.837 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.053 2.932 25.850 26.037 hybrid contribution 0.890 1.362 -1.150 1.992 sum -0.163 4.294 24.700 25.071 Atomic orbital electron populations 1.21802 0.91845 1.02710 1.02858 1.20283 0.97249 0.94673 0.82382 0.89108 1.60675 1.33898 1.33603 1.03591 1.21926 0.99350 0.92687 0.89896 1.18148 0.91822 0.93018 0.91132 1.21693 0.98703 0.98352 0.99360 1.21482 0.96954 0.98515 0.99512 1.21429 1.43270 0.96153 0.95123 0.93132 1.25569 0.95317 0.96230 1.00861 1.69986 1.45090 1.15188 1.24214 0.85766 0.78219 0.79325 0.79510 1.20649 1.21480 1.19459 1.24793 1.01081 0.83158 0.99258 1.22770 1.06392 1.02183 0.92386 1.22402 1.02105 0.89238 0.96987 1.17939 1.02161 0.95459 0.89168 1.21412 0.98088 0.96324 0.95969 1.21494 0.98269 1.00116 0.93860 1.21698 0.97930 0.91896 1.01150 1.21394 0.98983 0.99788 0.94142 1.21328 0.98872 0.97346 0.95850 1.74128 1.16574 1.24695 0.93950 1.84834 1.60670 1.24743 1.26730 0.90243 0.91290 0.92755 0.84164 0.91900 0.96256 0.95381 0.92688 0.96240 0.96622 0.93580 0.94995 0.93473 0.77889 0.83752 0.82487 0.82763 0.83702 0.86911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 9.40 71.98 0.68 -2.46 16 2 C 0.16 4.23 3.09 44.17 0.14 4.37 16 3 H 0.09 2.04 7.80 -2.39 -0.02 2.02 16 4 N -0.68 -22.77 5.51 -495.45 -2.73 -25.50 16 5 C 0.09 3.44 4.38 86.30 0.38 3.82 16 6 C 0.06 2.79 0.57 -52.92 -0.03 2.76 16 7 C -0.12 -5.81 7.92 71.98 0.57 -5.24 16 8 C -0.11 -5.18 8.09 71.99 0.58 -4.60 16 9 C -0.52 -27.37 8.01 25.60 0.21 -27.16 16 10 H 0.05 2.61 7.74 -2.91 -0.02 2.59 16 11 C 0.02 1.02 5.15 84.65 0.44 1.46 16 12 N -0.91 -50.70 9.35 21.45 0.20 -50.49 16 13 Si 0.94 42.90 29.54 68.60 2.03 44.92 16 14 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 15 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 16 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 17 C -0.02 -0.51 5.96 24.99 0.15 -0.36 16 18 C -0.22 -4.84 10.45 22.58 0.24 -4.61 16 19 C 0.05 1.30 7.06 43.00 0.30 1.60 16 20 C -0.05 -1.05 5.88 -20.04 -0.12 -1.16 16 21 C -0.10 -1.61 9.60 22.48 0.22 -1.39 16 22 C -0.12 -1.45 10.03 22.24 0.22 -1.23 16 23 C -0.11 -1.30 10.04 22.31 0.22 -1.07 16 24 C -0.13 -1.95 10.03 22.24 0.22 -1.72 16 25 C -0.11 -2.49 9.70 22.48 0.22 -2.27 16 26 N -0.39 -12.29 11.82 -49.45 -0.58 -12.88 16 27 O 0.10 3.06 11.18 71.42 0.80 3.86 16 28 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 29 H 0.07 1.65 7.45 -2.39 -0.02 1.63 16 30 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.34 11.82 6.39 -89.70 -0.57 11.25 16 32 H 0.06 2.39 7.44 -2.39 -0.02 2.37 16 33 H 0.02 0.73 8.06 -2.39 -0.02 0.71 16 34 H 0.03 1.18 6.57 -2.39 -0.02 1.17 16 35 H 0.05 2.93 6.07 -2.39 -0.01 2.91 16 36 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 37 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.05 2.49 6.07 -2.38 -0.01 2.47 16 39 H 0.03 1.43 7.60 -2.39 -0.02 1.42 16 40 H 0.26 13.86 8.31 -92.70 -0.77 13.08 16 41 H 0.20 2.97 7.58 -2.91 -0.02 2.95 16 42 H 0.14 1.72 7.23 -2.91 -0.02 1.70 16 43 H 0.16 0.94 8.06 -2.91 -0.02 0.92 16 44 H 0.15 0.89 8.06 -2.92 -0.02 0.87 16 45 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 46 H 0.11 2.68 7.90 -2.91 -0.02 2.65 16 Total: -1.00 -62.87 373.04 4.74 -58.13 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.40 Total: 21.22 kcal Atomic # 6 Polarization: -43.88 SS G_CDS: 4.63 Total: -39.25 kcal Atomic # 7 Polarization: -85.76 SS G_CDS: -3.12 Total: -88.87 kcal Atomic # 8 Polarization: 3.06 SS G_CDS: 0.80 Total: 3.86 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Total: -62.87 4.74 -58.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926568441.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.569 kcal (2) G-P(sol) polarization free energy of solvation -62.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds