Wall clock time and date at job start Tue Mar 31 2020 11:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 C 1.81400 * 102.99891 * 2 1 4 4 C 1.53005 * 109.46826 * 179.97438 * 3 2 1 5 5 C 1.53118 * 109.52534 * 294.68791 * 4 3 2 6 6 C 1.53035 * 109.27620 * 182.44031 * 5 4 3 7 7 N 1.46848 * 109.52552 * 59.17885 * 6 5 4 8 8 C 1.46900 * 111.00335 * 174.15734 * 7 6 5 9 9 H 1.08991 * 109.47506 * 190.22064 * 8 7 6 10 10 C 1.52994 * 109.47244 * 310.22681 * 8 7 6 11 11 C 1.50703 * 109.46663 * 70.22325 * 8 7 6 12 12 O 1.21282 * 120.00379 * 333.91998 * 11 8 7 13 13 N 1.34776 * 119.99708 * 153.92289 * 11 8 7 14 14 C 1.46499 * 120.00334 * 359.97438 * 13 11 8 15 15 C 1.46507 * 120.00048 * 179.97438 * 13 11 8 16 16 C 1.50708 * 109.46896 * 89.99722 * 15 13 11 17 17 H 1.08002 * 119.99887 * 0.02562 * 16 15 13 18 18 C 1.37870 * 119.99864 * 180.02562 * 16 15 13 19 19 N 1.31519 * 120.00172 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00029 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47337 * 89.99972 * 20 18 16 22 22 H 1.48500 * 109.47330 * 209.99883 * 20 18 16 23 23 H 1.48505 * 109.46969 * 329.99926 * 20 18 16 24 24 C 1.46844 * 111.19636 * 298.25688 * 7 6 5 25 25 C 1.53042 * 109.52493 * 61.74231 * 24 7 6 26 26 H 1.08998 * 109.46903 * 300.00245 * 1 2 3 27 27 H 1.08997 * 109.47062 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46844 * 59.99679 * 1 2 3 29 29 H 1.08993 * 109.47570 * 299.99905 * 3 2 1 30 30 H 1.09010 * 109.46848 * 60.00445 * 3 2 1 31 31 H 1.08998 * 109.51599 * 54.87965 * 4 3 2 32 32 H 1.09000 * 109.50329 * 302.38117 * 5 4 3 33 33 H 1.08992 * 109.50320 * 62.49919 * 5 4 3 34 34 H 1.08998 * 109.46615 * 299.16047 * 6 5 4 35 35 H 1.09003 * 109.46254 * 179.19309 * 6 5 4 36 36 H 1.09005 * 109.47224 * 59.99462 * 10 8 7 37 37 H 1.08998 * 109.47660 * 179.97438 * 10 8 7 38 38 H 1.08997 * 109.47094 * 299.99759 * 10 8 7 39 39 H 1.08999 * 109.46945 * 90.00087 * 14 13 11 40 40 H 1.09003 * 109.47132 * 210.00170 * 14 13 11 41 41 H 1.09005 * 109.46972 * 329.99981 * 14 13 11 42 42 H 1.09000 * 109.47397 * 209.99699 * 15 13 11 43 43 H 1.09000 * 109.47108 * 330.00552 * 15 13 11 44 44 H 0.97002 * 119.99888 * 179.97438 * 19 18 16 45 45 H 1.09001 * 109.46535 * 301.72246 * 24 7 6 46 46 H 1.09010 * 109.45429 * 181.75100 * 24 7 6 47 47 H 1.09002 * 109.50383 * 180.87976 * 25 24 7 48 48 H 1.09001 * 109.50229 * 60.76126 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9399 0.0006 5 6 4.3182 1.3988 1.3122 6 6 5.8310 1.6292 1.3328 7 7 6.1104 3.0656 1.2105 8 6 7.5456 3.3379 1.3655 9 1 7.7042 4.4127 1.4524 10 6 8.0635 2.6424 2.6260 11 6 8.2886 2.8162 0.1626 12 8 7.8290 1.8979 -0.4828 13 7 9.4638 3.3700 -0.1959 14 6 10.0188 4.4795 0.5833 15 6 10.1864 2.8625 -1.3650 16 6 9.7449 3.6148 -2.5940 17 1 9.0009 4.3934 -2.5123 18 6 10.2909 3.3091 -3.8225 19 7 11.1966 2.3607 -3.9220 20 14 9.7442 4.2421 -5.3457 21 1 10.6111 5.4329 -5.5345 22 1 9.8527 3.3575 -6.5336 23 1 8.3341 4.6775 -5.1800 24 6 5.6083 3.5977 -0.0627 25 6 4.0888 3.4261 -0.1251 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 1.8032 2.2372 -0.8899 30 1 1.8032 2.2371 0.8901 31 1 4.1712 1.3936 -0.8394 32 1 3.8594 1.9188 2.1531 33 1 4.1117 0.3313 1.3872 34 1 6.2908 1.0976 0.4998 35 1 6.2421 1.2579 2.2716 36 1 7.9049 1.5674 2.5390 37 1 9.1285 2.8440 2.7408 38 1 7.5261 3.0197 3.4960 39 1 10.6549 4.0846 1.3755 40 1 10.6087 5.1228 -0.0697 41 1 9.2057 5.0566 1.0238 42 1 11.2575 3.0019 -1.2188 43 1 9.9721 1.8013 -1.4921 44 1 11.5804 2.1454 -4.7865 45 1 6.0691 3.0568 -0.8893 46 1 5.8576 4.6562 -0.1374 47 1 3.7184 3.8069 -1.0769 48 1 3.6264 3.9781 0.6932 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932595348.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:50 Heat of formation + Delta-G solvation = -35.598072 kcal Electronic energy + Delta-G solvation = -25510.914751 eV Core-core repulsion = 22112.925475 eV Total energy + Delta-G solvation = -3397.989276 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.17144 -37.98842 -35.10630 -34.60346 -32.64426 -31.15712 -30.47504 -29.19655 -27.84113 -27.25640 -25.88673 -24.27477 -22.78513 -22.55869 -21.09084 -19.68108 -18.27667 -16.65672 -16.43143 -16.32705 -16.19775 -14.98804 -14.82084 -14.73142 -14.58244 -14.21879 -14.10726 -13.93614 -13.65936 -13.55031 -13.12700 -13.08468 -12.46660 -12.43568 -12.30118 -12.21401 -11.96574 -11.75344 -11.67928 -11.39934 -11.25234 -11.05481 -10.88693 -10.74897 -10.68808 -10.58084 -10.31288 -10.18958 -10.11593 -9.84899 -9.62879 -9.45726 -8.45272 -7.78955 -7.67897 -7.63867 -6.05842 -4.10810 1.53532 2.46848 3.28190 3.34145 3.36396 3.41390 3.97545 4.10697 4.43252 4.66136 4.71506 4.88746 4.90204 4.94226 5.09824 5.14735 5.28050 5.28845 5.31674 5.42655 5.45363 5.48118 5.56455 5.63091 5.74703 5.75149 5.83684 5.91296 5.94341 5.97999 6.09654 6.13865 6.17276 6.20727 6.26277 6.34521 6.44001 6.64191 7.01493 7.24054 7.33226 7.42959 7.53364 7.90244 8.21824 8.40770 8.88270 9.07686 9.54407 11.02197 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.013314 B = 0.003709 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.587842 B = 7548.211695 C = 8886.277976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.261 6.261 3 C -0.075 4.075 4 C -0.074 4.074 5 C -0.105 4.105 6 C 0.031 3.969 7 N -0.510 5.510 8 C 0.057 3.943 9 H 0.099 0.901 10 C -0.140 4.140 11 C 0.480 3.520 12 O -0.540 6.540 13 N -0.599 5.599 14 C 0.081 3.919 15 C 0.244 3.756 16 C -0.525 4.525 17 H 0.056 0.944 18 C 0.061 3.939 19 N -0.895 5.895 20 Si 0.897 3.103 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.274 1.274 24 C 0.041 3.959 25 C -0.099 4.099 26 H 0.074 0.926 27 H 0.098 0.902 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.045 0.955 40 H 0.073 0.927 41 H 0.059 0.941 42 H 0.030 0.970 43 H 0.042 0.958 44 H 0.263 0.737 45 H 0.064 0.936 46 H 0.068 0.932 47 H 0.065 0.935 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.476 1.749 13.371 20.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 S -0.035 6.035 3 C -0.223 4.223 4 C -0.093 4.093 5 C -0.143 4.143 6 C -0.096 4.096 7 N -0.234 5.234 8 C -0.055 4.055 9 H 0.117 0.883 10 C -0.198 4.198 11 C 0.265 3.735 12 O -0.418 6.418 13 N -0.331 5.331 14 C -0.063 4.063 15 C 0.125 3.875 16 C -0.564 4.564 17 H 0.074 0.926 18 C -0.141 4.141 19 N -0.533 5.533 20 Si 0.725 3.275 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.087 4.087 25 C -0.139 4.139 26 H 0.093 0.907 27 H 0.117 0.883 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.064 0.936 40 H 0.092 0.908 41 H 0.077 0.923 42 H 0.048 0.952 43 H 0.060 0.940 44 H 0.073 0.927 45 H 0.082 0.918 46 H 0.087 0.913 47 H 0.083 0.917 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.186 0.520 13.264 20.170 hybrid contribution -0.591 1.302 -1.654 2.186 sum -15.777 1.821 11.610 19.673 Atomic orbital electron populations 1.23374 0.95183 1.06254 1.04602 1.87075 1.06221 1.12184 1.97981 1.23525 1.00644 0.93613 1.04538 1.21008 0.91050 0.97339 0.99931 1.21635 0.95393 1.00839 0.96403 1.22460 0.95550 0.88766 1.02869 1.62519 1.11564 1.15850 1.33451 1.21936 0.88114 1.01362 0.94069 0.88290 1.21807 1.00955 1.01116 0.95910 1.21505 0.81833 0.83667 0.86483 1.90591 1.66160 1.29733 1.55339 1.48310 1.21469 1.33467 1.29880 1.21706 0.98653 0.90154 0.95808 1.19278 0.91071 0.96159 0.81029 1.21400 1.23316 1.19433 0.92215 0.92606 1.24935 0.95000 0.95226 0.98936 1.69934 1.28061 1.30287 1.25066 0.86511 0.79049 0.79539 0.82414 1.20626 1.21057 1.19920 1.22222 0.94688 1.00024 0.91796 1.21551 0.95877 0.94845 1.01613 0.90737 0.88313 0.90754 0.90295 0.90202 0.90086 0.91770 0.91021 0.90655 0.90913 0.91732 0.91814 0.91128 0.93642 0.90827 0.92263 0.95163 0.93961 0.92713 0.91779 0.91304 0.91669 0.91439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.98 10.76 101.05 1.09 0.11 16 2 S -0.26 -2.96 21.26 -107.50 -2.29 -5.24 16 3 C -0.07 -0.79 5.39 37.16 0.20 -0.59 16 4 C -0.07 -0.94 2.25 -90.50 -0.20 -1.14 16 5 C -0.10 -1.34 5.16 -26.65 -0.14 -1.48 16 6 C 0.03 0.46 4.63 -3.83 -0.02 0.45 16 7 N -0.51 -7.61 4.73 -228.08 -1.08 -8.69 16 8 C 0.06 0.87 2.29 -68.87 -0.16 0.72 16 9 H 0.10 1.37 6.01 -51.93 -0.31 1.06 16 10 C -0.14 -1.77 8.59 37.15 0.32 -1.45 16 11 C 0.48 9.73 5.93 -10.98 -0.07 9.67 16 12 O -0.54 -13.06 11.91 5.56 0.07 -13.00 16 13 N -0.60 -12.61 2.86 -182.94 -0.52 -13.13 16 14 C 0.08 1.27 10.04 59.85 0.60 1.87 16 15 C 0.24 6.40 5.16 -5.19 -0.03 6.38 16 16 C -0.52 -14.88 9.39 -34.44 -0.32 -15.21 16 17 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 18 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 19 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 20 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 24 C 0.04 0.64 4.90 -3.83 -0.02 0.62 16 25 C -0.10 -1.25 5.38 -26.65 -0.14 -1.40 16 26 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 27 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.53 8.14 -51.92 -0.42 0.10 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 31 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.93 7.25 -51.93 -0.38 0.55 16 34 H 0.08 1.42 5.65 -51.93 -0.29 1.12 16 35 H 0.07 1.01 5.82 -51.93 -0.30 0.70 16 36 H 0.06 0.87 6.19 -51.93 -0.32 0.55 16 37 H 0.06 0.75 7.90 -51.93 -0.41 0.34 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.05 0.61 8.12 -51.93 -0.42 0.19 16 40 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 41 H 0.06 0.77 5.84 -51.93 -0.30 0.46 16 42 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 43 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 44 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 45 H 0.06 1.28 6.04 -51.93 -0.31 0.96 16 46 H 0.07 1.04 8.12 -51.92 -0.42 0.62 16 47 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 378.27 15.07 5.70 5.70 Total: -1.00 -32.25 378.27 -9.86 -42.11 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -8.47 Total: 1.14 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: 1.02 Total: 0.20 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: -0.86 Total: -47.81 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.07 Total: -13.00 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: -2.96 SS G_CDS: -2.29 Total: -5.24 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.25 -9.86 -42.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932595348.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.508 kcal (2) G-P(sol) polarization free energy of solvation -32.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds