Wall clock time and date at job start Tue Mar 31 2020 10:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.88418 * 2 1 4 4 C 1.54909 * 111.00352 * 236.11496 * 2 1 3 5 5 N 1.47432 * 104.82925 * 204.87696 * 4 2 1 6 6 C 1.34775 * 125.64589 * 204.08925 * 5 4 2 7 7 O 1.21551 * 119.99977 * 5.77881 * 6 5 4 8 8 C 1.47840 * 119.99848 * 185.77046 * 6 5 4 9 9 C 1.39601 * 120.14497 * 353.03221 * 8 6 5 10 10 C 1.37943 * 119.85343 * 179.97438 * 9 8 6 11 11 C 1.38376 * 120.14303 * 0.27091 * 10 9 8 12 12 C 1.38347 * 120.29418 * 359.45052 * 11 10 9 13 13 C 1.50699 * 119.92671 * 180.25870 * 12 11 10 14 14 C 1.52993 * 117.50101 * 8.91145 * 13 12 11 15 15 C 1.52991 * 60.00317 * 252.51368 * 14 13 12 16 16 C 1.37978 * 120.14280 * 0.55027 * 12 11 10 17 17 C 1.47017 * 108.70229 * 24.36008 * 5 4 2 18 18 C 1.54339 * 107.26793 * 358.58269 * 17 5 4 19 19 H 1.08997 * 110.66618 * 96.52450 * 18 17 5 20 20 N 1.46503 * 110.84849 * 219.67482 * 18 17 5 21 21 C 1.36935 * 119.99907 * 268.68980 * 20 18 17 22 22 H 1.08000 * 120.00225 * 0.02562 * 21 20 18 23 23 C 1.38810 * 119.99869 * 180.02562 * 21 20 18 24 24 N 1.31618 * 119.99910 * 180.02562 * 23 21 20 25 25 Si 1.86796 * 120.00111 * 359.97438 * 23 21 20 26 26 H 1.48508 * 109.46926 * 90.00390 * 25 23 21 27 27 H 1.48502 * 109.47569 * 210.00102 * 25 23 21 28 28 H 1.48491 * 109.47286 * 330.00531 * 25 23 21 29 29 H 1.08995 * 109.47506 * 182.43179 * 1 2 3 30 30 H 1.09000 * 109.47053 * 302.43389 * 1 2 3 31 31 H 1.09005 * 109.46922 * 62.43042 * 1 2 3 32 32 H 1.09000 * 110.36418 * 86.04300 * 4 2 1 33 33 H 1.08997 * 110.46235 * 323.76532 * 4 2 1 34 34 H 1.07991 * 120.07173 * 359.95113 * 9 8 6 35 35 H 1.07998 * 119.92305 * 179.97438 * 10 9 8 36 36 H 1.07998 * 119.85520 * 179.70134 * 11 10 9 37 37 H 1.09004 * 115.54689 * 154.62483 * 13 12 11 38 38 H 1.09007 * 117.50065 * 0.02562 * 14 13 12 39 39 H 1.09005 * 117.50062 * 145.02212 * 14 13 12 40 40 H 1.09005 * 117.50001 * 252.51179 * 15 14 13 41 41 H 1.09000 * 117.49925 * 107.48851 * 15 14 13 42 42 H 1.08001 * 120.07052 * 179.70794 * 16 12 11 43 43 H 1.09003 * 109.88637 * 118.12873 * 17 5 4 44 44 H 1.08995 * 109.88277 * 239.29254 * 17 5 4 45 45 H 0.96998 * 119.99774 * 88.69070 * 20 18 17 46 46 H 0.97004 * 120.00377 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8063 -1.2005 5 7 3.4275 -1.2420 -0.7740 6 6 4.4479 -1.5600 -1.5951 7 8 4.3356 -1.3988 -2.7946 8 6 5.7038 -2.1047 -1.0367 9 6 5.8924 -2.1556 0.3455 10 6 7.0663 -2.6656 0.8600 11 6 8.0580 -3.1209 0.0091 12 6 7.8751 -3.0786 -1.3616 13 6 8.9582 -3.5820 -2.2805 14 6 10.1403 -4.3154 -1.6439 15 6 10.3263 -2.9020 -2.1990 16 6 6.7056 -2.5709 -1.8892 17 6 3.4666 -1.2785 0.6952 18 6 2.0869 -0.8077 1.2020 19 1 1.4464 -1.6616 1.4229 20 7 2.2294 0.0498 2.3813 21 6 2.2014 -0.5002 3.6351 22 1 2.0747 -1.5660 3.7546 23 6 2.3358 0.3124 4.7525 24 7 2.3094 -0.2162 5.9575 25 14 2.5557 2.1558 4.5458 26 1 1.2249 2.8148 4.5343 27 1 3.3617 2.6878 5.6739 28 1 3.2551 2.4304 3.2650 29 1 -0.3634 -1.0267 0.0436 30 1 -0.3633 0.5512 0.8674 31 1 -0.3633 0.4757 -0.9110 32 1 2.1553 -0.1715 -2.0838 33 1 1.4528 -1.6703 -1.4044 34 1 5.1212 -1.7962 1.0106 35 1 7.2137 -2.7051 1.9292 36 1 8.9772 -3.5147 0.4168 37 1 8.6228 -3.9223 -3.2603 38 1 10.1346 -4.4342 -0.5603 39 1 10.5830 -5.1387 -2.2047 40 1 10.8913 -2.7952 -3.1251 41 1 10.4430 -2.0905 -1.4807 42 1 6.5659 -2.5341 -2.9595 43 1 3.6616 -2.2954 1.0358 44 1 4.2430 -0.6072 1.0621 45 1 2.3435 1.0070 2.2740 46 1 2.4030 0.3516 6.7384 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939824637.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:58 Heat of formation + Delta-G solvation = 53.493555 kcal Electronic energy + Delta-G solvation = -25898.880449 eV Core-core repulsion = 22369.310524 eV Total energy + Delta-G solvation = -3529.569925 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.55230 -39.22357 -37.68019 -36.67834 -34.29930 -32.86710 -31.27062 -31.08523 -30.51834 -28.16070 -26.48088 -24.73407 -23.61663 -23.04912 -22.47711 -21.69974 -20.70836 -20.26959 -19.33305 -17.64448 -17.13652 -16.56656 -16.24812 -15.54821 -15.51556 -14.84336 -14.78071 -14.36131 -14.03043 -13.86739 -13.55736 -13.39229 -13.26084 -12.94249 -12.71253 -12.53302 -12.41524 -12.23614 -11.92887 -11.75799 -11.54199 -11.45617 -11.18312 -11.04539 -10.88401 -10.70319 -10.67339 -10.45180 -10.41446 -10.07393 -9.82308 -9.69866 -9.05608 -8.99773 -8.64289 -8.43918 -7.46444 -5.90753 -3.29224 0.87454 1.30910 2.89505 3.09039 3.28573 3.31731 3.38015 3.56023 3.97235 4.31011 4.46652 4.50183 4.62578 4.72687 4.80228 4.86913 4.93639 4.98347 5.03829 5.08690 5.30405 5.37189 5.37437 5.46184 5.50530 5.55404 5.60519 5.65508 5.71315 5.76157 5.80461 5.81911 5.87027 5.98845 5.99668 6.03438 6.18675 6.26756 6.31568 6.40480 6.41945 6.46558 6.50095 6.66917 6.87882 7.65016 7.83102 8.26980 8.27781 9.03948 9.76292 9.94184 11.26631 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013793 B = 0.003619 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.561729 B = 7734.783930 C = 9236.440388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.118 4.118 3 H 0.081 0.919 4 C 0.114 3.886 5 N -0.608 5.608 6 C 0.572 3.428 7 O -0.551 6.551 8 C -0.127 4.127 9 C -0.123 4.123 10 C -0.122 4.122 11 C -0.100 4.100 12 C -0.069 4.069 13 C -0.115 4.115 14 C -0.177 4.177 15 C -0.170 4.170 16 C -0.057 4.057 17 C 0.062 3.938 18 C 0.180 3.820 19 H 0.080 0.920 20 N -0.735 5.735 21 C -0.255 4.255 22 H 0.093 0.907 23 C 0.012 3.988 24 N -0.927 5.927 25 Si 0.882 3.118 26 H -0.283 1.283 27 H -0.290 1.290 28 H -0.276 1.276 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.171 0.829 35 H 0.131 0.869 36 H 0.124 0.876 37 H 0.113 0.887 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.132 0.868 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.364 0.636 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.566 -5.390 -14.722 18.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.138 4.138 3 H 0.100 0.900 4 C -0.009 4.009 5 N -0.340 5.340 6 C 0.362 3.638 7 O -0.431 6.431 8 C -0.130 4.130 9 C -0.141 4.141 10 C -0.140 4.140 11 C -0.118 4.118 12 C -0.069 4.069 13 C -0.133 4.133 14 C -0.214 4.214 15 C -0.207 4.207 16 C -0.076 4.076 17 C -0.064 4.064 18 C 0.068 3.932 19 H 0.098 0.902 20 N -0.376 5.376 21 C -0.385 4.385 22 H 0.111 0.889 23 C -0.185 4.185 24 N -0.574 5.574 25 Si 0.712 3.288 26 H -0.209 1.209 27 H -0.216 1.216 28 H -0.203 1.203 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.187 0.813 35 H 0.149 0.851 36 H 0.142 0.858 37 H 0.131 0.869 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.150 0.850 43 H 0.093 0.907 44 H 0.101 0.899 45 H 0.198 0.802 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.528 -5.467 -15.150 18.713 hybrid contribution 0.357 1.296 0.119 1.350 sum 9.885 -4.170 -15.031 18.467 Atomic orbital electron populations 1.21610 0.93537 1.02212 1.01787 1.22697 0.96640 0.99679 0.94817 0.90023 1.22281 0.82427 0.98345 0.97820 1.48350 1.12137 1.65763 1.07757 1.17989 0.82656 0.77717 0.85456 1.90727 1.82265 1.55338 1.14755 1.19839 0.95067 1.03991 0.94100 1.23083 0.99270 0.96398 0.95314 1.21213 0.93532 0.98971 1.00268 1.21257 0.99175 0.98532 0.92820 1.19016 0.94418 1.00179 0.93251 1.20996 0.88079 1.04561 0.99661 1.23073 1.01624 0.95530 1.01173 1.23035 0.98248 0.96121 1.03307 1.20973 0.91408 0.95159 1.00061 1.23722 1.02824 1.01622 0.78202 1.21305 0.91820 0.93948 0.86105 0.90223 1.42723 1.87921 1.05091 1.01853 1.19066 1.43522 0.94689 0.81198 0.88900 1.24668 1.01317 0.97409 0.95069 1.69692 1.56076 1.34589 0.97018 0.86610 0.78024 0.87101 0.77114 1.20908 1.21620 1.20259 0.92415 0.91489 0.93024 0.90645 0.91254 0.81271 0.85136 0.85825 0.86866 0.88289 0.88444 0.88461 0.88526 0.85025 0.90669 0.89913 0.80206 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.70 9.30 37.16 0.35 -1.35 16 2 C -0.12 -1.69 3.27 -88.47 -0.29 -1.98 16 3 H 0.08 1.21 8.01 -51.93 -0.42 0.80 16 4 C 0.11 1.60 6.40 -2.53 -0.02 1.59 16 5 N -0.61 -9.52 3.33 -175.71 -0.58 -10.11 16 6 C 0.57 9.65 7.81 -12.33 -0.10 9.56 16 7 O -0.55 -10.57 16.60 5.32 0.09 -10.48 16 8 C -0.13 -1.93 5.87 -104.97 -0.62 -2.54 16 9 C -0.12 -1.75 8.61 -39.18 -0.34 -2.09 16 10 C -0.12 -1.53 10.03 -39.64 -0.40 -1.92 16 11 C -0.10 -1.13 9.29 -39.49 -0.37 -1.50 16 12 C -0.07 -0.81 5.61 -104.68 -0.59 -1.40 16 13 C -0.11 -1.08 6.04 -91.78 -0.55 -1.64 16 14 C -0.18 -1.36 9.85 -26.74 -0.26 -1.62 16 15 C -0.17 -1.37 10.16 -26.74 -0.27 -1.64 16 16 C -0.06 -0.79 9.28 -39.18 -0.36 -1.15 16 17 C 0.06 0.98 4.63 -3.06 -0.01 0.96 16 18 C 0.18 3.06 3.08 -66.09 -0.20 2.85 16 19 H 0.08 1.38 7.96 -51.93 -0.41 0.96 16 20 N -0.73 -15.47 4.96 -51.64 -0.26 -15.73 16 21 C -0.26 -6.53 10.44 -15.06 -0.16 -6.68 16 22 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 23 C 0.01 0.33 5.50 -17.43 -0.10 0.24 16 24 N -0.93 -27.47 13.97 55.49 0.78 -26.70 16 25 Si 0.88 20.79 27.73 -169.99 -4.71 16.07 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.28 -6.13 6.52 56.52 0.37 -5.76 16 29 H 0.06 0.69 8.11 -51.93 -0.42 0.27 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.08 1.07 7.98 -51.93 -0.41 0.65 16 33 H 0.07 0.90 8.04 -51.93 -0.42 0.48 16 34 H 0.17 2.48 2.75 -57.78 -0.16 2.32 16 35 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 36 H 0.12 1.12 6.01 -52.49 -0.32 0.81 16 37 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.10 0.73 6.17 -51.92 -0.32 0.40 16 39 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.13 1.78 7.67 -52.49 -0.40 1.38 16 43 H 0.08 1.15 6.75 -51.93 -0.35 0.80 16 44 H 0.08 1.39 6.61 -51.93 -0.34 1.05 16 45 H 0.36 7.69 5.62 -40.82 -0.23 7.46 16 46 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 367.45 15.07 5.54 5.54 Total: -1.00 -30.55 367.45 -10.19 -40.74 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -6.75 Total: 10.99 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -4.29 Total: -10.33 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: -0.07 Total: -52.54 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.71 Total: 16.07 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.55 -10.19 -40.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939824637.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.234 kcal (2) G-P(sol) polarization free energy of solvation -30.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds