Wall clock time and date at job start Tue Mar 31 2020 10:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.88418 * 2 1 4 4 C 1.54909 * 111.00352 * 236.11496 * 2 1 3 5 5 N 1.47432 * 104.82925 * 204.87696 * 4 2 1 6 6 C 1.34775 * 125.64589 * 204.08925 * 5 4 2 7 7 O 1.21551 * 119.99977 * 5.77881 * 6 5 4 8 8 C 1.47840 * 119.99848 * 185.77046 * 6 5 4 9 9 C 1.39601 * 120.14497 * 353.03221 * 8 6 5 10 10 C 1.37943 * 119.85343 * 179.97438 * 9 8 6 11 11 C 1.38376 * 120.14303 * 0.27091 * 10 9 8 12 12 C 1.38347 * 120.29418 * 359.45052 * 11 10 9 13 13 C 1.50699 * 119.92671 * 180.25870 * 12 11 10 14 14 C 1.52993 * 117.50101 * 8.91145 * 13 12 11 15 15 C 1.52991 * 60.00317 * 252.51368 * 14 13 12 16 16 C 1.37978 * 120.14280 * 0.55027 * 12 11 10 17 17 C 1.47017 * 108.70229 * 24.36008 * 5 4 2 18 18 C 1.54339 * 107.26793 * 358.58269 * 17 5 4 19 19 H 1.08997 * 110.66618 * 96.52450 * 18 17 5 20 20 N 1.46503 * 110.84849 * 219.67482 * 18 17 5 21 21 C 1.36935 * 119.99907 * 268.68980 * 20 18 17 22 22 H 1.08000 * 120.00225 * 0.02562 * 21 20 18 23 23 C 1.38810 * 119.99869 * 180.02562 * 21 20 18 24 24 N 1.31618 * 119.99910 * 180.02562 * 23 21 20 25 25 Si 1.86796 * 120.00111 * 359.97438 * 23 21 20 26 26 H 1.48508 * 109.46926 * 90.00390 * 25 23 21 27 27 H 1.48502 * 109.47569 * 210.00102 * 25 23 21 28 28 H 1.48491 * 109.47286 * 330.00531 * 25 23 21 29 29 H 1.08995 * 109.47506 * 182.43179 * 1 2 3 30 30 H 1.09000 * 109.47053 * 302.43389 * 1 2 3 31 31 H 1.09005 * 109.46922 * 62.43042 * 1 2 3 32 32 H 1.09000 * 110.36418 * 86.04300 * 4 2 1 33 33 H 1.08997 * 110.46235 * 323.76532 * 4 2 1 34 34 H 1.07991 * 120.07173 * 359.95113 * 9 8 6 35 35 H 1.07998 * 119.92305 * 179.97438 * 10 9 8 36 36 H 1.07998 * 119.85520 * 179.70134 * 11 10 9 37 37 H 1.09004 * 115.54689 * 154.62483 * 13 12 11 38 38 H 1.09007 * 117.50065 * 0.02562 * 14 13 12 39 39 H 1.09005 * 117.50062 * 145.02212 * 14 13 12 40 40 H 1.09005 * 117.50001 * 252.51179 * 15 14 13 41 41 H 1.09000 * 117.49925 * 107.48851 * 15 14 13 42 42 H 1.08001 * 120.07052 * 179.70794 * 16 12 11 43 43 H 1.09003 * 109.88637 * 118.12873 * 17 5 4 44 44 H 1.08995 * 109.88277 * 239.29254 * 17 5 4 45 45 H 0.96998 * 119.99774 * 88.69070 * 20 18 17 46 46 H 0.97004 * 120.00377 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8063 -1.2005 5 7 3.4275 -1.2420 -0.7740 6 6 4.4479 -1.5600 -1.5951 7 8 4.3356 -1.3988 -2.7946 8 6 5.7038 -2.1047 -1.0367 9 6 5.8924 -2.1556 0.3455 10 6 7.0663 -2.6656 0.8600 11 6 8.0580 -3.1209 0.0091 12 6 7.8751 -3.0786 -1.3616 13 6 8.9582 -3.5820 -2.2805 14 6 10.1403 -4.3154 -1.6439 15 6 10.3263 -2.9020 -2.1990 16 6 6.7056 -2.5709 -1.8892 17 6 3.4666 -1.2785 0.6952 18 6 2.0869 -0.8077 1.2020 19 1 1.4464 -1.6616 1.4229 20 7 2.2294 0.0498 2.3813 21 6 2.2014 -0.5002 3.6351 22 1 2.0747 -1.5660 3.7546 23 6 2.3358 0.3124 4.7525 24 7 2.3094 -0.2162 5.9575 25 14 2.5557 2.1558 4.5458 26 1 1.2249 2.8148 4.5343 27 1 3.3617 2.6878 5.6739 28 1 3.2551 2.4304 3.2650 29 1 -0.3634 -1.0267 0.0436 30 1 -0.3633 0.5512 0.8674 31 1 -0.3633 0.4757 -0.9110 32 1 2.1553 -0.1715 -2.0838 33 1 1.4528 -1.6703 -1.4044 34 1 5.1212 -1.7962 1.0106 35 1 7.2137 -2.7051 1.9292 36 1 8.9772 -3.5147 0.4168 37 1 8.6228 -3.9223 -3.2603 38 1 10.1346 -4.4342 -0.5603 39 1 10.5830 -5.1387 -2.2047 40 1 10.8913 -2.7952 -3.1251 41 1 10.4430 -2.0905 -1.4807 42 1 6.5659 -2.5341 -2.9595 43 1 3.6616 -2.2954 1.0358 44 1 4.2430 -0.6072 1.0621 45 1 2.3435 1.0070 2.2740 46 1 2.4030 0.3516 6.7384 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939824637.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:57 Heat of formation + Delta-G solvation = 37.045777 kcal Electronic energy + Delta-G solvation = -25899.593678 eV Core-core repulsion = 22369.310524 eV Total energy + Delta-G solvation = -3530.283154 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.74800 -40.24514 -38.99305 -37.53366 -36.00729 -34.21176 -33.03489 -32.11277 -31.58064 -29.65561 -27.59401 -26.10734 -24.95486 -24.02183 -23.24845 -22.92191 -21.80115 -21.64114 -20.46507 -19.52466 -18.17091 -17.70593 -17.47773 -16.76926 -16.45924 -16.40618 -15.90161 -15.81220 -15.11522 -14.96407 -14.87190 -14.80134 -14.56850 -14.27432 -13.99205 -13.77662 -13.58277 -13.32388 -13.05143 -12.95531 -12.94359 -12.71962 -12.30491 -12.17224 -12.10779 -11.94833 -11.83385 -11.69345 -11.61642 -11.47013 -11.34840 -11.11884 -10.85184 -10.08353 -9.70094 -9.58447 -9.34751 -8.00108 -5.35293 -0.20179 0.30684 1.41620 1.42727 1.49716 1.71777 1.85126 2.49876 2.66632 3.11526 3.22087 3.29696 3.56529 3.59145 3.65841 3.76711 3.89916 3.95689 4.07843 4.09834 4.14125 4.17042 4.29244 4.33140 4.36596 4.51635 4.52939 4.64725 4.78408 4.79959 4.83330 4.86130 4.88969 5.02294 5.06537 5.08370 5.11018 5.16056 5.25474 5.27931 5.35126 5.42012 5.47315 5.52881 5.79767 5.88754 6.22961 6.35673 6.97190 7.07936 7.81573 8.00233 9.20499 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013793 B = 0.003619 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.561729 B = 7734.783930 C = 9236.440388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.106 4.106 3 H 0.080 0.920 4 C 0.114 3.886 5 N -0.607 5.607 6 C 0.567 3.433 7 O -0.580 6.580 8 C -0.146 4.146 9 C -0.135 4.135 10 C -0.126 4.126 11 C -0.094 4.094 12 C -0.063 4.063 13 C -0.135 4.135 14 C -0.165 4.165 15 C -0.166 4.166 16 C -0.069 4.069 17 C 0.075 3.925 18 C 0.173 3.827 19 H 0.077 0.923 20 N -0.736 5.736 21 C -0.229 4.229 22 H 0.067 0.933 23 C -0.054 4.054 24 N -0.979 5.979 25 Si 0.945 3.055 26 H -0.280 1.280 27 H -0.300 1.300 28 H -0.253 1.253 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.162 0.838 35 H 0.146 0.854 36 H 0.152 0.848 37 H 0.117 0.883 38 H 0.105 0.895 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.092 0.908 42 H 0.127 0.873 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.367 0.633 46 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.865 -5.317 -16.220 20.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.126 4.126 3 H 0.099 0.901 4 C -0.008 4.008 5 N -0.338 5.338 6 C 0.359 3.641 7 O -0.462 6.462 8 C -0.149 4.149 9 C -0.153 4.153 10 C -0.144 4.144 11 C -0.112 4.112 12 C -0.063 4.063 13 C -0.153 4.153 14 C -0.201 4.201 15 C -0.203 4.203 16 C -0.088 4.088 17 C -0.050 4.050 18 C 0.063 3.937 19 H 0.095 0.905 20 N -0.377 5.377 21 C -0.360 4.360 22 H 0.084 0.916 23 C -0.246 4.246 24 N -0.629 5.629 25 Si 0.773 3.227 26 H -0.206 1.206 27 H -0.227 1.227 28 H -0.178 1.178 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.178 0.822 35 H 0.164 0.836 36 H 0.169 0.831 37 H 0.135 0.865 38 H 0.123 0.877 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.111 0.889 42 H 0.145 0.855 43 H 0.097 0.903 44 H 0.093 0.907 45 H 0.201 0.799 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.816 -5.398 -16.707 20.622 hybrid contribution -0.004 1.148 0.507 1.255 sum 10.812 -4.250 -16.200 19.936 Atomic orbital electron populations 1.21596 0.91981 1.02787 1.02415 1.22616 0.97824 0.99061 0.93110 0.90122 1.22394 0.81813 0.98941 0.97667 1.48374 1.12615 1.65382 1.07453 1.18306 0.83270 0.77352 0.85171 1.90698 1.82891 1.56821 1.15834 1.19829 0.94932 1.05434 0.94711 1.22995 1.00027 0.97478 0.94769 1.21451 0.93129 0.98451 1.01330 1.21573 0.99745 0.97361 0.92487 1.19290 0.94220 0.98820 0.94009 1.21047 0.88121 1.06410 0.99757 1.23192 0.99555 0.95719 1.01646 1.23109 0.96859 0.96403 1.03939 1.21060 0.92096 0.95870 0.99805 1.23452 1.01547 1.01628 0.78418 1.21479 0.92538 0.93904 0.85780 0.90501 1.42650 1.88028 1.05599 1.01463 1.19020 1.40489 0.93525 0.82919 0.91551 1.25368 1.02584 1.01872 0.94784 1.69858 1.58986 1.36117 0.97910 0.85571 0.77940 0.81685 0.77512 1.20633 1.22750 1.17818 0.91748 0.92774 0.90641 0.90331 0.89807 0.82161 0.83637 0.83050 0.86472 0.87721 0.86872 0.87106 0.88913 0.85495 0.90312 0.90660 0.79904 0.93389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 9.30 71.98 0.67 -2.35 16 2 C -0.11 -2.86 3.27 -9.40 -0.03 -2.89 16 3 H 0.08 2.23 8.01 -2.38 -0.02 2.21 16 4 C 0.11 3.04 6.40 86.85 0.56 3.60 16 5 N -0.61 -18.68 3.33 -828.09 -2.75 -21.43 16 6 C 0.57 19.20 7.81 86.79 0.68 19.88 16 7 O -0.58 -22.38 16.60 -3.88 -0.06 -22.44 16 8 C -0.15 -4.44 5.87 -20.09 -0.12 -4.56 16 9 C -0.14 -3.81 8.61 22.53 0.19 -3.61 16 10 C -0.13 -2.99 10.03 22.23 0.22 -2.76 16 11 C -0.09 -1.94 9.29 22.33 0.21 -1.73 16 12 C -0.06 -1.41 5.61 -19.90 -0.11 -1.52 16 13 C -0.14 -2.27 6.04 -11.54 -0.07 -2.34 16 14 C -0.16 -2.00 9.85 30.59 0.30 -1.70 16 15 C -0.17 -2.25 10.16 30.59 0.31 -1.94 16 16 C -0.07 -1.89 9.28 22.53 0.21 -1.69 16 17 C 0.07 2.34 4.63 86.74 0.40 2.74 16 18 C 0.17 5.73 3.08 46.18 0.14 5.88 16 19 H 0.08 2.62 7.96 -2.39 -0.02 2.60 16 20 N -0.74 -30.42 4.96 -317.30 -1.57 -31.99 16 21 C -0.23 -11.78 10.44 84.03 0.88 -10.90 16 22 H 0.07 3.73 8.06 -2.91 -0.02 3.71 16 23 C -0.05 -2.97 5.50 84.86 0.47 -2.50 16 24 N -0.98 -59.45 13.97 21.65 0.30 -59.15 16 25 Si 0.94 42.92 27.73 68.60 1.90 44.82 16 26 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 27 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 28 H -0.25 -10.39 6.52 99.48 0.65 -9.74 16 29 H 0.06 1.41 8.11 -2.39 -0.02 1.39 16 30 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 32 H 0.08 2.10 7.98 -2.39 -0.02 2.08 16 33 H 0.08 2.02 8.04 -2.39 -0.02 2.00 16 34 H 0.16 4.72 2.75 -7.88 -0.02 4.70 16 35 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 36 H 0.15 2.25 6.01 -2.91 -0.02 2.23 16 37 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.10 1.16 6.17 -2.38 -0.01 1.14 16 39 H 0.11 1.05 8.14 -2.38 -0.02 1.03 16 40 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 41 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.13 3.50 7.67 -2.91 -0.02 3.48 16 43 H 0.08 2.42 6.75 -2.39 -0.02 2.40 16 44 H 0.08 2.51 6.61 -2.39 -0.02 2.49 16 45 H 0.37 14.88 5.62 -92.71 -0.52 14.36 16 46 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -66.56 367.45 3.12 -63.44 By element: Atomic # 1 Polarization: 34.76 SS G_CDS: 0.40 Total: 35.16 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: 4.91 Total: -8.41 kcal Atomic # 7 Polarization: -108.54 SS G_CDS: -4.02 Total: -112.57 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.06 Total: -22.44 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.90 Total: 44.82 kcal Total: -66.56 3.12 -63.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939824637.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.486 kcal (2) G-P(sol) polarization free energy of solvation -66.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds