Wall clock time and date at job start Tue Mar 31 2020 10:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32676 * 1 3 3 C 1.47673 * 119.99932 * 2 1 4 4 C 1.39710 * 119.99603 * 180.02562 * 3 2 1 5 5 C 1.37599 * 120.00584 * 180.02562 * 4 3 2 6 6 C 1.39748 * 119.99438 * 359.97438 * 5 4 3 7 7 C 1.47683 * 120.00209 * 180.02562 * 6 5 4 8 8 O 1.21576 * 120.00658 * 0.02562 * 7 6 5 9 9 N 1.34785 * 119.99664 * 180.02562 * 7 6 5 10 10 C 1.46502 * 119.99661 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.46512 * 324.97321 * 10 9 7 12 12 C 1.53042 * 109.45845 * 84.93486 * 10 9 7 13 13 C 1.53193 * 109.31551 * 181.38326 * 12 10 9 14 14 N 1.46927 * 108.77412 * 305.36428 * 13 12 10 15 15 C 1.36932 * 120.63333 * 233.63096 * 14 13 12 16 16 H 1.07998 * 120.00486 * 152.60272 * 15 14 13 17 17 C 1.38817 * 119.99879 * 332.59806 * 15 14 13 18 18 N 1.31614 * 120.00106 * 159.35787 * 17 15 14 19 19 Si 1.86800 * 119.99943 * 339.36541 * 17 15 14 20 20 H 1.48499 * 109.47373 * 92.89392 * 19 17 15 21 21 H 1.48500 * 109.47263 * 212.89818 * 19 17 15 22 22 H 1.48504 * 109.46899 * 332.90094 * 19 17 15 23 23 C 1.46937 * 118.73760 * 53.60561 * 14 13 12 24 24 C 1.53041 * 109.45823 * 204.99995 * 10 9 7 25 25 H 1.09008 * 109.49789 * 298.59998 * 24 10 9 26 26 C 1.52997 * 109.50024 * 58.66542 * 24 10 9 27 27 C 1.39747 * 119.99052 * 0.02562 * 6 5 4 28 28 C 1.37601 * 119.99745 * 359.97438 * 27 6 5 29 29 H 1.08001 * 119.99827 * 179.97438 * 1 2 3 30 30 H 1.08002 * 120.00198 * 359.97438 * 1 2 3 31 31 H 1.08002 * 120.00198 * 180.02562 * 2 1 3 32 32 H 1.08008 * 119.99980 * 0.27835 * 4 3 2 33 33 H 1.07996 * 120.00521 * 180.02562 * 5 4 3 34 34 H 0.96993 * 119.99891 * 0.02562 * 9 7 6 35 35 H 1.09002 * 109.49807 * 301.33732 * 12 10 9 36 36 H 1.09006 * 109.50010 * 61.43251 * 12 10 9 37 37 H 1.08994 * 109.58632 * 185.57931 * 13 12 10 38 38 H 1.09001 * 109.70025 * 65.21709 * 13 12 10 39 39 H 0.97001 * 119.99861 * 179.97438 * 18 17 15 40 40 H 1.09001 * 109.58164 * 186.60372 * 23 14 13 41 41 H 1.08999 * 109.70036 * 66.24886 * 23 14 13 42 42 H 1.08997 * 109.46931 * 59.99583 * 26 24 10 43 43 H 1.08994 * 109.47296 * 180.02562 * 26 24 10 44 44 H 1.09001 * 109.47002 * 300.00080 * 26 24 10 45 45 H 1.07999 * 120.00211 * 179.97438 * 27 6 5 46 46 H 1.07999 * 119.99996 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3268 0.0000 0.0000 3 6 2.0651 1.2789 0.0000 4 6 3.4622 1.2788 -0.0005 5 6 4.1504 2.4703 0.0000 6 6 3.4517 3.6806 0.0005 7 6 4.1902 4.9596 0.0005 8 8 5.4059 4.9597 -0.0004 9 7 3.5162 6.1268 0.0016 10 6 4.2488 7.3956 0.0021 11 1 5.1594 7.2889 0.5916 12 6 4.6134 7.7743 -1.4351 13 6 5.4091 9.0834 -1.4278 14 7 4.6318 10.1052 -0.7132 15 6 4.3585 11.3115 -1.3008 16 1 3.4748 11.8631 -1.0159 17 6 5.2173 11.8255 -2.2627 18 7 4.7882 12.7387 -3.1076 19 14 6.9822 11.2207 -2.3579 20 1 7.0692 10.0978 -3.3258 21 1 7.8620 12.3299 -2.8060 22 1 7.4183 10.7535 -1.0174 23 6 4.1528 9.8078 0.6437 24 6 3.3713 8.4906 0.6131 25 1 2.4717 8.6147 0.0101 26 6 2.9802 8.0957 2.0385 27 6 2.0543 3.6805 0.0011 28 6 1.3664 2.4887 0.0005 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8668 -0.9353 -0.0004 32 1 4.0022 0.3434 -0.0055 33 1 5.2304 2.4703 -0.0008 34 1 2.5463 6.1268 0.0027 35 1 5.2188 6.9831 -1.8774 36 1 3.7024 7.9056 -2.0191 37 1 5.5858 9.4093 -2.4528 38 1 6.3631 8.9308 -0.9231 39 1 5.3885 13.0981 -3.7795 40 1 3.5008 10.6117 0.9853 41 1 5.0019 9.7133 1.3205 42 1 3.8799 7.9728 2.6413 43 1 2.3549 8.8756 2.4730 44 1 2.4266 7.1569 2.0165 45 1 1.5141 4.6157 0.0019 46 1 0.2865 2.4886 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942935997.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:33 Heat of formation + Delta-G solvation = 28.882022 kcal Electronic energy + Delta-G solvation = -25823.841513 eV Core-core repulsion = 22293.204352 eV Total energy + Delta-G solvation = -3530.637161 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.43178 -39.06337 -37.73331 -34.77350 -34.52298 -32.80634 -31.64758 -31.37025 -30.43908 -29.48689 -26.41462 -25.44722 -24.02932 -22.99606 -22.17626 -21.44854 -20.69925 -20.00349 -19.65188 -17.97707 -16.73952 -16.70193 -16.04879 -15.34423 -15.10345 -14.90709 -14.87521 -14.45162 -14.23393 -13.73360 -13.64120 -13.47614 -13.45416 -13.17091 -13.01890 -12.73150 -12.57168 -12.11253 -11.94323 -11.67458 -11.65594 -11.55999 -11.23762 -11.01483 -10.72021 -10.61142 -10.54789 -10.16634 -10.03254 -9.99258 -9.68392 -9.49051 -9.33629 -8.86476 -8.62217 -8.53359 -6.99047 -5.94798 -3.30874 0.26280 1.08059 1.91478 2.95660 3.20731 3.35716 3.51281 3.55139 3.72767 4.29193 4.35850 4.54578 4.55471 4.68610 4.81819 4.91779 4.98608 5.00903 5.08886 5.26353 5.31581 5.32913 5.43360 5.47292 5.66910 5.71262 5.82767 5.85437 5.88259 5.92102 6.02153 6.05829 6.09428 6.11987 6.16076 6.26717 6.34737 6.35916 6.42903 6.55132 6.59115 6.65212 6.69945 6.74862 6.93041 7.58418 7.95582 8.26727 8.32451 8.93438 9.72186 10.09561 11.20971 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.024543 B = 0.002816 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.584793 B = 9942.136583 C =10266.757113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.123 4.123 3 C -0.040 4.040 4 C -0.118 4.118 5 C -0.060 4.060 6 C -0.129 4.129 7 C 0.553 3.447 8 O -0.538 6.538 9 N -0.716 5.716 10 C 0.157 3.843 11 H 0.084 0.916 12 C -0.141 4.141 13 C 0.128 3.872 14 N -0.606 5.606 15 C -0.261 4.261 16 H 0.086 0.914 17 C 0.024 3.976 18 N -0.908 5.908 19 Si 0.881 3.119 20 H -0.288 1.288 21 H -0.303 1.303 22 H -0.270 1.270 23 C 0.158 3.842 24 C -0.116 4.116 25 H 0.076 0.924 26 C -0.142 4.142 27 C -0.084 4.084 28 C -0.123 4.123 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.120 0.880 32 H 0.130 0.870 33 H 0.138 0.862 34 H 0.395 0.605 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.028 0.972 39 H 0.263 0.737 40 H 0.068 0.932 41 H 0.025 0.975 42 H 0.053 0.947 43 H 0.056 0.944 44 H 0.047 0.953 45 H 0.128 0.872 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.974 -24.169 8.498 27.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.141 4.141 3 C -0.040 4.040 4 C -0.136 4.136 5 C -0.078 4.078 6 C -0.132 4.132 7 C 0.340 3.660 8 O -0.416 6.416 9 N -0.366 5.366 10 C 0.053 3.947 11 H 0.102 0.898 12 C -0.182 4.182 13 C 0.002 3.998 14 N -0.330 5.330 15 C -0.389 4.389 16 H 0.104 0.896 17 C -0.175 4.175 18 N -0.551 5.551 19 Si 0.712 3.288 20 H -0.216 1.216 21 H -0.231 1.231 22 H -0.195 1.195 23 C 0.031 3.969 24 C -0.137 4.137 25 H 0.094 0.906 26 C -0.200 4.200 27 C -0.102 4.102 28 C -0.141 4.141 29 H 0.124 0.876 30 H 0.121 0.879 31 H 0.138 0.862 32 H 0.148 0.852 33 H 0.156 0.844 34 H 0.231 0.769 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.046 0.954 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.043 0.957 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.066 0.934 45 H 0.146 0.854 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.056 -23.978 8.367 26.643 hybrid contribution 0.496 -0.325 -0.272 0.652 sum -7.560 -24.303 8.095 26.708 Atomic orbital electron populations 1.24469 0.95678 1.02496 0.98304 1.21843 0.95283 0.95758 1.01175 1.19312 0.93426 0.93253 0.98041 1.21242 0.93159 0.98210 1.00972 1.21237 1.00963 0.90733 0.94903 1.20137 0.93669 0.93984 1.05439 1.18238 0.87345 0.83737 0.76655 1.90782 1.13366 1.87563 1.49849 1.46172 1.10164 1.05907 1.74369 1.21045 0.95294 0.80929 0.97413 0.89752 1.22405 1.01367 0.98742 0.95660 1.21322 0.93127 0.87730 0.97598 1.44400 1.63209 1.13507 1.11841 1.18901 1.05691 0.95479 1.18807 0.89641 1.25270 0.97970 0.96659 0.97600 1.69834 1.35367 1.31689 1.18192 0.86978 0.87019 0.76629 0.78219 1.21579 1.23130 1.19461 1.20918 0.95763 0.93319 0.86892 1.21972 0.99438 0.96516 0.95785 0.90567 1.21770 1.01199 1.00583 0.96476 1.21248 0.93053 0.98481 0.97460 1.21213 1.00112 0.91479 1.01288 0.87582 0.87860 0.86181 0.85184 0.84439 0.76948 0.92267 0.91580 0.90708 0.95442 0.92762 0.91380 0.95663 0.92807 0.92442 0.93353 0.85405 0.85172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.93 14.15 28.84 0.41 -0.53 16 2 C -0.12 -0.80 9.90 -37.62 -0.37 -1.18 16 3 C -0.04 -0.34 5.87 -104.95 -0.62 -0.96 16 4 C -0.12 -1.05 9.76 -39.27 -0.38 -1.43 16 5 C -0.06 -0.66 9.58 -39.25 -0.38 -1.03 16 6 C -0.13 -1.53 5.88 -104.91 -0.62 -2.14 16 7 C 0.55 8.12 7.73 -12.40 -0.10 8.02 16 8 O -0.54 -9.89 15.99 5.30 0.08 -9.81 16 9 N -0.72 -9.58 4.32 -54.76 -0.24 -9.81 16 10 C 0.16 2.54 1.88 -67.89 -0.13 2.42 16 11 H 0.08 1.53 7.58 -51.93 -0.39 1.13 16 12 C -0.14 -2.66 5.65 -26.61 -0.15 -2.81 16 13 C 0.13 2.89 4.21 -3.71 -0.02 2.87 16 14 N -0.61 -14.33 2.77 -172.31 -0.48 -14.81 16 15 C -0.26 -7.24 10.03 -15.06 -0.15 -7.39 16 16 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 17 C 0.02 0.70 5.23 -17.43 -0.09 0.61 16 18 N -0.91 -27.88 13.97 55.49 0.78 -27.11 16 19 Si 0.88 22.80 24.34 -169.99 -4.14 18.67 16 20 H -0.29 -7.27 6.62 56.52 0.37 -6.89 16 21 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 22 H -0.27 -6.90 6.64 56.52 0.38 -6.52 16 23 C 0.16 3.02 5.80 -3.71 -0.02 3.00 16 24 C -0.12 -1.79 2.46 -90.50 -0.22 -2.01 16 25 H 0.08 1.19 8.14 -51.92 -0.42 0.77 16 26 C -0.14 -1.75 9.03 37.16 0.34 -1.41 16 27 C -0.08 -0.78 9.52 -39.25 -0.37 -1.16 16 28 C -0.12 -1.02 9.38 -39.26 -0.37 -1.39 16 29 H 0.11 0.41 8.06 -52.49 -0.42 -0.01 16 30 H 0.10 0.50 6.02 -52.49 -0.32 0.19 16 31 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 32 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 33 H 0.14 1.54 7.64 -52.49 -0.40 1.14 16 34 H 0.40 4.18 6.32 -40.82 -0.26 3.92 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.07 1.84 4.50 -51.93 -0.23 1.61 16 38 H 0.03 0.63 7.07 -51.93 -0.37 0.26 16 39 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 40 H 0.07 1.28 7.93 -51.93 -0.41 0.87 16 41 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.05 0.51 7.36 -51.93 -0.38 0.13 16 45 H 0.13 0.93 6.38 -52.49 -0.34 0.60 16 46 H 0.13 0.79 6.15 -52.49 -0.32 0.47 16 LS Contribution 364.14 15.07 5.49 5.49 Total: -1.00 -33.11 364.14 -8.58 -41.69 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -6.84 Total: 2.22 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -3.24 Total: -6.52 kcal Atomic # 7 Polarization: -51.79 SS G_CDS: 0.06 Total: -51.73 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.08 Total: -9.81 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -4.14 Total: 18.67 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.11 -8.58 -41.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942935997.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.569 kcal (2) G-P(sol) polarization free energy of solvation -33.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds