Wall clock time and date at job start Tue Mar 31 2020 10:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32676 * 1 3 3 C 1.47673 * 119.99932 * 2 1 4 4 C 1.39710 * 119.99603 * 180.02562 * 3 2 1 5 5 C 1.37599 * 120.00584 * 180.02562 * 4 3 2 6 6 C 1.39748 * 119.99438 * 359.97438 * 5 4 3 7 7 C 1.47683 * 120.00209 * 180.02562 * 6 5 4 8 8 O 1.21576 * 120.00658 * 0.02562 * 7 6 5 9 9 N 1.34785 * 119.99664 * 180.02562 * 7 6 5 10 10 C 1.46502 * 119.99661 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.46512 * 324.97321 * 10 9 7 12 12 C 1.53042 * 109.45845 * 84.93486 * 10 9 7 13 13 C 1.53193 * 109.31551 * 181.38326 * 12 10 9 14 14 N 1.46927 * 108.77412 * 305.36428 * 13 12 10 15 15 C 1.36932 * 120.63333 * 233.63096 * 14 13 12 16 16 H 1.07998 * 120.00486 * 152.60272 * 15 14 13 17 17 C 1.38817 * 119.99879 * 332.59806 * 15 14 13 18 18 N 1.31614 * 120.00106 * 159.35787 * 17 15 14 19 19 Si 1.86800 * 119.99943 * 339.36541 * 17 15 14 20 20 H 1.48499 * 109.47373 * 92.89392 * 19 17 15 21 21 H 1.48500 * 109.47263 * 212.89818 * 19 17 15 22 22 H 1.48504 * 109.46899 * 332.90094 * 19 17 15 23 23 C 1.46937 * 118.73760 * 53.60561 * 14 13 12 24 24 C 1.53041 * 109.45823 * 204.99995 * 10 9 7 25 25 H 1.09008 * 109.49789 * 298.59998 * 24 10 9 26 26 C 1.52997 * 109.50024 * 58.66542 * 24 10 9 27 27 C 1.39747 * 119.99052 * 0.02562 * 6 5 4 28 28 C 1.37601 * 119.99745 * 359.97438 * 27 6 5 29 29 H 1.08001 * 119.99827 * 179.97438 * 1 2 3 30 30 H 1.08002 * 120.00198 * 359.97438 * 1 2 3 31 31 H 1.08002 * 120.00198 * 180.02562 * 2 1 3 32 32 H 1.08008 * 119.99980 * 0.27835 * 4 3 2 33 33 H 1.07996 * 120.00521 * 180.02562 * 5 4 3 34 34 H 0.96993 * 119.99891 * 0.02562 * 9 7 6 35 35 H 1.09002 * 109.49807 * 301.33732 * 12 10 9 36 36 H 1.09006 * 109.50010 * 61.43251 * 12 10 9 37 37 H 1.08994 * 109.58632 * 185.57931 * 13 12 10 38 38 H 1.09001 * 109.70025 * 65.21709 * 13 12 10 39 39 H 0.97001 * 119.99861 * 179.97438 * 18 17 15 40 40 H 1.09001 * 109.58164 * 186.60372 * 23 14 13 41 41 H 1.08999 * 109.70036 * 66.24886 * 23 14 13 42 42 H 1.08997 * 109.46931 * 59.99583 * 26 24 10 43 43 H 1.08994 * 109.47296 * 180.02562 * 26 24 10 44 44 H 1.09001 * 109.47002 * 300.00080 * 26 24 10 45 45 H 1.07999 * 120.00211 * 179.97438 * 27 6 5 46 46 H 1.07999 * 119.99996 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3268 0.0000 0.0000 3 6 2.0651 1.2789 0.0000 4 6 3.4622 1.2788 -0.0005 5 6 4.1504 2.4703 0.0000 6 6 3.4517 3.6806 0.0005 7 6 4.1902 4.9596 0.0005 8 8 5.4059 4.9597 -0.0004 9 7 3.5162 6.1268 0.0016 10 6 4.2488 7.3956 0.0021 11 1 5.1594 7.2889 0.5916 12 6 4.6134 7.7743 -1.4351 13 6 5.4091 9.0834 -1.4278 14 7 4.6318 10.1052 -0.7132 15 6 4.3585 11.3115 -1.3008 16 1 3.4748 11.8631 -1.0159 17 6 5.2173 11.8255 -2.2627 18 7 4.7882 12.7387 -3.1076 19 14 6.9822 11.2207 -2.3579 20 1 7.0692 10.0978 -3.3258 21 1 7.8620 12.3299 -2.8060 22 1 7.4183 10.7535 -1.0174 23 6 4.1528 9.8078 0.6437 24 6 3.3713 8.4906 0.6131 25 1 2.4717 8.6147 0.0101 26 6 2.9802 8.0957 2.0385 27 6 2.0543 3.6805 0.0011 28 6 1.3664 2.4887 0.0005 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8668 -0.9353 -0.0004 32 1 4.0022 0.3434 -0.0055 33 1 5.2304 2.4703 -0.0008 34 1 2.5463 6.1268 0.0027 35 1 5.2188 6.9831 -1.8774 36 1 3.7024 7.9056 -2.0191 37 1 5.5858 9.4093 -2.4528 38 1 6.3631 8.9308 -0.9231 39 1 5.3885 13.0981 -3.7795 40 1 3.5008 10.6117 0.9853 41 1 5.0019 9.7133 1.3205 42 1 3.8799 7.9728 2.6413 43 1 2.3549 8.8756 2.4730 44 1 2.4266 7.1569 2.0165 45 1 1.5141 4.6157 0.0019 46 1 0.2865 2.4886 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942935997.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:32 Heat of formation + Delta-G solvation = 8.636203 kcal Electronic energy + Delta-G solvation = -25824.719437 eV Core-core repulsion = 22293.204352 eV Total energy + Delta-G solvation = -3531.515086 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.48924 -40.08137 -39.05039 -36.34597 -35.16483 -34.27300 -33.39178 -32.39214 -31.66156 -30.38967 -27.83829 -26.96483 -25.13360 -23.68323 -23.63793 -23.08539 -21.72282 -21.19606 -20.50721 -19.08885 -18.64960 -17.73040 -17.24871 -16.66137 -16.14789 -16.12238 -15.98433 -15.83287 -15.21381 -15.18049 -15.00494 -14.78560 -14.39492 -14.27371 -14.14924 -13.91982 -13.76205 -13.58501 -13.34367 -13.16703 -12.84727 -12.70621 -12.24975 -12.23830 -12.13134 -11.95046 -11.80939 -11.76051 -11.51202 -11.38257 -11.31848 -11.03564 -10.74249 -10.10185 -10.02398 -9.20328 -8.98505 -8.19047 -5.50262 -0.44597 0.39897 1.27121 1.28985 1.37809 1.46237 2.05997 2.10342 2.38598 2.95950 3.01510 3.30230 3.58363 3.68146 3.78160 3.86935 3.91690 3.94936 4.07772 4.19883 4.33370 4.34496 4.37873 4.46062 4.56256 4.59347 4.71031 4.75366 4.79442 4.88436 4.88786 4.94178 5.02723 5.04577 5.09441 5.15693 5.24265 5.29265 5.32911 5.36587 5.44355 5.52309 5.66364 5.81574 5.84469 5.91512 6.11231 6.52361 6.87784 7.18063 7.58937 8.00659 9.00457 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.024543 B = 0.002816 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.584793 B = 9942.136583 C =10266.757113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.145 4.145 3 C -0.035 4.035 4 C -0.123 4.123 5 C -0.074 4.074 6 C -0.155 4.155 7 C 0.553 3.447 8 O -0.584 6.584 9 N -0.702 5.702 10 C 0.167 3.833 11 H 0.067 0.933 12 C -0.131 4.131 13 C 0.126 3.874 14 N -0.619 5.619 15 C -0.243 4.243 16 H 0.062 0.938 17 C -0.030 4.030 18 N -0.952 5.952 19 Si 0.936 3.064 20 H -0.281 1.281 21 H -0.308 1.308 22 H -0.266 1.266 23 C 0.150 3.850 24 C -0.103 4.103 25 H 0.079 0.921 26 C -0.135 4.135 27 C -0.078 4.078 28 C -0.128 4.128 29 H 0.124 0.876 30 H 0.110 0.890 31 H 0.132 0.868 32 H 0.150 0.850 33 H 0.124 0.876 34 H 0.412 0.588 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.051 0.949 38 H 0.025 0.975 39 H 0.261 0.739 40 H 0.069 0.931 41 H 0.031 0.969 42 H 0.050 0.950 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.149 0.851 46 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.159 -27.126 9.840 30.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.163 4.163 3 C -0.035 4.035 4 C -0.141 4.141 5 C -0.093 4.093 6 C -0.158 4.158 7 C 0.342 3.658 8 O -0.465 6.465 9 N -0.353 5.353 10 C 0.062 3.938 11 H 0.085 0.915 12 C -0.172 4.172 13 C 0.000 4.000 14 N -0.343 5.343 15 C -0.373 4.373 16 H 0.080 0.920 17 C -0.226 4.226 18 N -0.599 5.599 19 Si 0.766 3.234 20 H -0.209 1.209 21 H -0.237 1.237 22 H -0.191 1.191 23 C 0.025 3.975 24 C -0.123 4.123 25 H 0.098 0.902 26 C -0.193 4.193 27 C -0.097 4.097 28 C -0.145 4.145 29 H 0.142 0.858 30 H 0.128 0.872 31 H 0.150 0.850 32 H 0.167 0.833 33 H 0.142 0.858 34 H 0.250 0.750 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.043 0.957 39 H 0.070 0.930 40 H 0.088 0.912 41 H 0.049 0.951 42 H 0.069 0.931 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.167 0.833 46 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -10.280 -26.981 9.746 30.474 hybrid contribution 1.023 0.468 -0.642 1.295 sum -9.257 -26.514 9.104 29.522 Atomic orbital electron populations 1.24764 0.95334 1.03764 0.95366 1.21944 0.95847 0.95343 1.03169 1.19659 0.93358 0.94444 0.96089 1.21447 0.93761 0.98147 1.00769 1.21267 1.00591 0.91588 0.95811 1.19960 0.94713 0.92467 1.08667 1.18710 0.86939 0.84751 0.75358 1.90754 1.15463 1.88214 1.52059 1.45893 1.10838 1.04604 1.73976 1.20727 0.95355 0.82494 0.95250 0.91450 1.22244 1.00656 0.96554 0.97703 1.21272 0.93609 0.89105 0.96024 1.44528 1.63516 1.12496 1.13731 1.18897 1.04305 0.96337 1.17747 0.91980 1.25808 1.01095 0.97584 0.98069 1.69937 1.36400 1.33980 1.19551 0.86076 0.82943 0.76034 0.78355 1.20850 1.23691 1.19052 1.21156 0.96339 0.95485 0.84494 1.21781 0.98436 0.93944 0.98147 0.90243 1.21719 1.01602 1.02142 0.93801 1.21455 0.91883 0.99980 0.96340 1.21548 1.01468 0.90916 1.00615 0.85830 0.87154 0.84976 0.83275 0.85824 0.74962 0.92518 0.91521 0.93089 0.95714 0.92954 0.91239 0.95106 0.93075 0.91063 0.91088 0.83341 0.82545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 14.15 66.65 0.94 -0.11 16 2 C -0.15 -1.42 9.90 23.60 0.23 -1.19 16 3 C -0.04 -0.50 5.87 -20.07 -0.12 -0.62 16 4 C -0.12 -2.01 9.76 22.47 0.22 -1.79 16 5 C -0.07 -1.60 9.58 22.48 0.22 -1.38 16 6 C -0.16 -3.50 5.88 -20.05 -0.12 -3.62 16 7 C 0.55 15.89 7.73 86.74 0.67 16.57 16 8 O -0.58 -21.84 15.99 -3.95 -0.06 -21.91 16 9 N -0.70 -17.56 4.32 -445.41 -1.92 -19.49 16 10 C 0.17 5.21 1.88 45.02 0.08 5.30 16 11 H 0.07 2.40 7.58 -2.39 -0.02 2.38 16 12 C -0.13 -4.89 5.65 30.67 0.17 -4.71 16 13 C 0.13 5.67 4.21 86.36 0.36 6.03 16 14 N -0.62 -29.22 2.77 -699.07 -1.94 -31.15 16 15 C -0.24 -13.73 10.03 84.04 0.84 -12.88 16 16 H 0.06 3.74 8.06 -2.91 -0.02 3.72 16 17 C -0.03 -1.80 5.23 84.86 0.44 -1.36 16 18 N -0.95 -60.11 13.97 21.65 0.30 -59.81 16 19 Si 0.94 48.23 24.34 68.60 1.67 49.90 16 20 H -0.28 -14.02 6.62 99.48 0.66 -13.36 16 21 H -0.31 -15.99 7.11 99.48 0.71 -15.29 16 22 H -0.27 -13.34 6.64 99.48 0.66 -12.68 16 23 C 0.15 5.60 5.80 86.36 0.50 6.10 16 24 C -0.10 -2.95 2.46 -10.72 -0.03 -2.98 16 25 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 26 C -0.13 -2.88 9.03 71.98 0.65 -2.23 16 27 C -0.08 -1.25 9.52 22.48 0.21 -1.03 16 28 C -0.13 -1.70 9.38 22.47 0.21 -1.49 16 29 H 0.12 0.42 8.06 -2.91 -0.02 0.40 16 30 H 0.11 0.57 6.02 -2.91 -0.02 0.56 16 31 H 0.13 0.93 8.06 -2.91 -0.02 0.91 16 32 H 0.15 1.72 8.06 -2.91 -0.02 1.69 16 33 H 0.12 2.92 7.64 -2.91 -0.02 2.90 16 34 H 0.41 7.50 6.32 -92.71 -0.59 6.91 16 35 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 37 H 0.05 2.53 4.50 -2.39 -0.01 2.52 16 38 H 0.02 1.13 7.07 -2.39 -0.02 1.12 16 39 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 40 H 0.07 2.55 7.93 -2.39 -0.02 2.53 16 41 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.07 1.23 7.36 -2.39 -0.02 1.21 16 45 H 0.15 1.62 6.38 -2.91 -0.02 1.60 16 46 H 0.16 1.20 6.15 -2.91 -0.02 1.18 16 Total: -1.00 -74.04 364.14 3.86 -70.18 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 0.30 Total: 13.68 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: 5.50 Total: -1.41 kcal Atomic # 7 Polarization: -106.89 SS G_CDS: -3.56 Total: -110.45 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.06 Total: -21.91 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 1.67 Total: 49.90 kcal Total: -74.04 3.86 -70.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942935997.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.817 kcal (2) G-P(sol) polarization free energy of solvation -74.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds