Wall clock time and date at job start Tue Mar 31 2020 10:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47750 * 2 1 4 4 N 1.46503 * 109.46828 * 240.00121 * 2 1 3 5 5 C 1.34780 * 120.00169 * 85.00283 * 4 2 1 6 6 O 1.21283 * 119.99409 * 359.97438 * 5 4 2 7 7 C 1.50698 * 120.00071 * 180.02562 * 5 4 2 8 8 H 1.08998 * 115.55252 * 34.41497 * 7 5 4 9 9 C 1.53001 * 117.51596 * 248.71579 * 7 5 4 10 10 C 1.52998 * 117.49621 * 180.08513 * 7 5 4 11 11 H 1.08998 * 117.49992 * 0.02562 * 10 7 5 12 12 C 1.50698 * 117.49851 * 215.00027 * 10 7 5 13 13 C 1.38233 * 120.00104 * 299.72998 * 12 10 7 14 14 C 1.38240 * 120.00169 * 179.79020 * 13 12 10 15 15 C 1.38230 * 119.99714 * 0.43645 * 14 13 12 16 16 C 1.38235 * 120.00110 * 359.81663 * 15 14 13 17 17 C 1.38231 * 119.99962 * 120.00425 * 12 10 7 18 18 C 1.53003 * 109.47033 * 120.00493 * 2 1 3 19 19 C 1.53941 * 113.74022 * 281.83128 * 18 2 1 20 20 N 1.47574 * 86.11752 * 222.04920 * 19 18 2 21 21 C 1.36944 * 134.49362 * 204.63901 * 20 19 18 22 22 H 1.07997 * 120.00123 * 179.97438 * 21 20 19 23 23 C 1.38806 * 119.99767 * 0.02562 * 21 20 19 24 24 N 1.31622 * 120.00310 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99971 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47229 * 59.99385 * 25 23 21 27 27 H 1.48501 * 109.47267 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.46841 * 299.99836 * 25 23 21 29 29 C 1.47580 * 91.01669 * 24.63989 * 20 19 18 30 30 H 1.09003 * 109.46612 * 295.53590 * 1 2 3 31 31 H 1.09001 * 109.47157 * 55.52959 * 1 2 3 32 32 H 1.08996 * 109.47371 * 175.53007 * 1 2 3 33 33 H 0.96998 * 120.00130 * 265.00433 * 4 2 1 34 34 H 1.08998 * 117.50019 * 0.02562 * 9 7 5 35 35 H 1.08998 * 117.50018 * 145.03259 * 9 7 5 36 36 H 1.08002 * 120.00138 * 359.97438 * 13 12 10 37 37 H 1.07996 * 119.99919 * 180.27723 * 14 13 12 38 38 H 1.08005 * 120.00252 * 179.83763 * 15 14 13 39 39 H 1.08004 * 120.00343 * 179.97438 * 16 15 14 40 40 H 1.07995 * 120.00270 * 359.97438 * 17 12 10 41 41 H 1.08995 * 112.94393 * 53.56562 * 18 2 1 42 42 H 1.09002 * 113.76846 * 336.35192 * 19 18 2 43 43 H 1.08997 * 113.77052 * 107.74516 * 19 18 2 44 44 H 0.97000 * 120.00208 * 180.02562 * 24 23 21 45 45 H 1.08991 * 113.76983 * 221.05722 * 29 20 19 46 46 H 1.09001 * 113.86841 * 89.67266 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8582 1.1584 -2.4117 7 6 2.6487 -0.7288 -3.5878 8 1 2.3496 -1.7726 -3.6828 9 6 4.0314 -0.3394 -4.1145 10 6 2.7746 0.0899 -4.8742 11 1 2.4950 1.1425 -4.8303 12 6 2.4756 -0.6087 -6.1756 13 6 3.2203 -1.7092 -6.5564 14 6 2.9432 -2.3526 -7.7481 15 6 1.9273 -1.8900 -8.5633 16 6 1.1859 -0.7863 -8.1851 17 6 1.4603 -0.1454 -6.9913 18 6 2.0400 -0.7214 1.2492 19 6 1.9741 0.1326 2.5283 20 7 3.3071 -0.4167 2.8434 21 6 4.0157 -0.6128 3.9988 22 1 5.0038 -1.0470 3.9591 23 6 3.4636 -0.2544 5.2208 24 7 2.2592 0.2744 5.2692 25 14 4.4299 -0.5224 6.7969 26 1 5.6985 0.2471 6.7367 27 1 3.6251 -0.0595 7.9558 28 1 4.7346 -1.9677 6.9509 29 6 3.5698 -0.6700 1.4135 30 1 -0.3633 0.4430 0.9273 31 1 -0.3633 0.5816 -0.8472 32 1 -0.3634 -1.0245 -0.0801 33 1 2.2489 -1.6318 -1.1527 34 1 4.5787 0.4305 -3.5707 35 1 4.6420 -1.1271 -4.5561 36 1 4.0168 -2.0682 -5.9214 37 1 3.5222 -3.2151 -8.0434 38 1 1.7124 -2.3910 -9.4957 39 1 0.3924 -0.4245 -8.8222 40 1 0.8810 0.7168 -6.6958 41 1 1.6196 -1.7204 1.3644 42 1 1.9747 1.2063 2.3402 43 1 1.1951 -0.1781 3.2244 44 1 1.8736 0.5252 6.1232 45 1 4.0647 -1.6215 1.2195 46 1 4.0393 0.1669 0.8963 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970753196.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:13 Heat of formation + Delta-G solvation = 62.440636 kcal Electronic energy + Delta-G solvation = -24992.440127 eV Core-core repulsion = 21463.258176 eV Total energy + Delta-G solvation = -3529.181950 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.41546 -39.39781 -38.16619 -36.47688 -34.71460 -32.16769 -31.26501 -31.00605 -30.29892 -27.46984 -25.30122 -24.50073 -24.08559 -23.61359 -22.65267 -21.17072 -20.56066 -20.10399 -18.99214 -17.68572 -17.01213 -16.72079 -16.01494 -15.42138 -15.26142 -14.91754 -14.78100 -14.52899 -13.98102 -13.96943 -13.68547 -13.55819 -13.20001 -13.13789 -12.71546 -12.30280 -12.19101 -12.04269 -11.63794 -11.54343 -11.39752 -11.29465 -11.20898 -10.94337 -10.86264 -10.68109 -10.65245 -10.34528 -10.05308 -9.81028 -9.62317 -9.40358 -9.21266 -8.84318 -8.82492 -8.77304 -6.86753 -5.75932 -3.08200 0.99992 1.11068 2.56061 3.17781 3.39915 3.43649 3.44137 3.45338 3.85136 4.30399 4.45962 4.50327 4.59147 4.68377 4.71268 4.82093 4.93513 5.00113 5.14771 5.18436 5.21976 5.31021 5.41712 5.45309 5.55614 5.66889 5.68252 5.71273 5.77773 5.83384 5.86137 6.01938 6.09993 6.19055 6.22566 6.29709 6.36359 6.37456 6.46606 6.61232 6.64539 6.70234 6.83210 7.23274 7.37396 7.56709 7.68153 7.99421 8.36480 9.05685 9.71734 10.61228 11.41226 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.032622 B = 0.002172 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.098604 B =12885.359452 C =13351.900767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.150 3.850 3 H 0.087 0.913 4 N -0.713 5.713 5 C 0.541 3.459 6 O -0.544 6.544 7 C -0.175 4.175 8 H 0.123 0.877 9 C -0.144 4.144 10 C -0.087 4.087 11 H 0.127 0.873 12 C -0.050 4.050 13 C -0.120 4.120 14 C -0.118 4.118 15 C -0.126 4.126 16 C -0.118 4.118 17 C -0.110 4.110 18 C -0.147 4.147 19 C 0.176 3.824 20 N -0.612 5.612 21 C -0.223 4.223 22 H 0.079 0.921 23 C -0.009 4.009 24 N -0.922 5.922 25 Si 0.912 3.088 26 H -0.285 1.285 27 H -0.290 1.290 28 H -0.284 1.284 29 C 0.126 3.874 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.399 0.601 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.088 0.912 42 H 0.027 0.973 43 H 0.075 0.925 44 H 0.254 0.746 45 H 0.040 0.960 46 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.627 -5.362 -26.284 26.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.046 3.954 3 H 0.105 0.895 4 N -0.363 5.363 5 C 0.327 3.673 6 O -0.422 6.422 7 C -0.196 4.196 8 H 0.141 0.859 9 C -0.181 4.181 10 C -0.105 4.105 11 H 0.145 0.855 12 C -0.050 4.050 13 C -0.138 4.138 14 C -0.136 4.136 15 C -0.144 4.144 16 C -0.136 4.136 17 C -0.128 4.128 18 C -0.167 4.167 19 C 0.050 3.950 20 N -0.338 5.338 21 C -0.351 4.351 22 H 0.096 0.904 23 C -0.205 4.205 24 N -0.569 5.569 25 Si 0.742 3.258 26 H -0.212 1.212 27 H -0.215 1.215 28 H -0.211 1.211 29 C 0.000 4.000 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.233 0.767 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.142 0.858 41 H 0.107 0.893 42 H 0.045 0.955 43 H 0.093 0.907 44 H 0.064 0.936 45 H 0.058 0.942 46 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -1.790 -4.500 -25.918 26.367 hybrid contribution 0.612 -0.564 0.939 1.255 sum -1.177 -5.064 -24.979 25.515 Atomic orbital electron populations 1.22112 0.95490 1.01660 1.02383 1.21121 0.93770 0.97439 0.83081 0.89538 1.46061 1.66582 1.14092 1.09553 1.19541 0.77369 0.86715 0.83678 1.90690 1.50505 1.15991 1.84982 1.22368 1.03038 1.00727 0.93496 0.85868 1.23133 0.89436 1.03697 1.01869 1.21082 1.01834 0.99734 0.87885 0.85518 1.19164 0.95890 0.95458 0.94493 1.21101 0.99861 0.95789 0.97076 1.21132 0.97926 0.99866 0.94697 1.21165 0.96376 0.97057 0.99829 1.21157 0.99735 0.96093 0.96645 1.21039 0.97183 1.00240 0.94310 1.23850 0.97574 1.00729 0.94539 1.22189 0.89664 0.93861 0.89322 1.45938 1.16317 1.71923 0.99642 1.18972 0.98380 1.34959 0.82803 0.90370 1.24787 0.97064 1.01151 0.97506 1.69799 1.15228 1.47338 1.24527 0.86200 0.78871 0.77823 0.82857 1.21216 1.21540 1.21095 1.22527 0.93104 0.97626 0.86786 0.91050 0.92835 0.92807 0.76706 0.87549 0.87468 0.85778 0.86053 0.86201 0.86012 0.85801 0.89343 0.95485 0.90703 0.93570 0.94169 0.95073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.46 37.16 0.35 -1.91 16 2 C 0.15 2.33 2.29 -67.93 -0.16 2.18 16 3 H 0.09 1.56 7.48 -51.93 -0.39 1.17 16 4 N -0.71 -9.22 4.95 -53.80 -0.27 -9.48 16 5 C 0.54 7.37 7.58 -10.98 -0.08 7.29 16 6 O -0.54 -9.46 15.92 5.56 0.09 -9.37 16 7 C -0.18 -1.77 5.82 -91.77 -0.53 -2.30 16 8 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 9 C -0.14 -1.28 9.56 -26.73 -0.26 -1.53 16 10 C -0.09 -0.86 5.55 -91.77 -0.51 -1.37 16 11 H 0.13 1.44 7.67 -51.93 -0.40 1.04 16 12 C -0.05 -0.46 5.61 -104.63 -0.59 -1.05 16 13 C -0.12 -0.98 9.30 -39.58 -0.37 -1.35 16 14 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 15 C -0.13 -0.93 10.05 -39.59 -0.40 -1.32 16 16 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 17 C -0.11 -0.98 9.74 -39.58 -0.39 -1.37 16 18 C -0.15 -2.63 3.36 -89.70 -0.30 -2.93 16 19 C 0.18 4.09 6.90 -2.98 -0.02 4.07 16 20 N -0.61 -15.79 3.70 -177.95 -0.66 -16.45 16 21 C -0.22 -6.33 10.70 -15.06 -0.16 -6.49 16 22 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 23 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 24 N -0.92 -27.46 11.38 55.49 0.63 -26.83 16 25 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 28 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 29 C 0.13 2.54 8.38 -2.98 -0.02 2.51 16 30 H 0.07 1.04 7.99 -51.93 -0.42 0.63 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.40 4.20 8.60 -40.82 -0.35 3.85 16 34 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.11 0.72 6.17 -51.93 -0.32 0.40 16 36 H 0.12 0.82 6.02 -52.49 -0.32 0.50 16 37 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 38 H 0.12 0.63 8.06 -52.48 -0.42 0.21 16 39 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 40 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 41 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 42 H 0.03 0.66 8.03 -51.93 -0.42 0.24 16 43 H 0.07 1.91 7.15 -51.93 -0.37 1.54 16 44 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 45 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.03 0.64 8.10 -51.93 -0.42 0.22 16 LS Contribution 381.15 15.07 5.74 5.74 Total: -1.00 -33.34 381.15 -10.98 -44.32 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -7.17 Total: 3.36 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: -4.32 Total: -8.52 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: -0.29 Total: -52.76 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.09 Total: -9.37 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.34 -10.98 -44.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970753196.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.760 kcal (2) G-P(sol) polarization free energy of solvation -33.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds