Wall clock time and date at job start Tue Mar 31 2020 10:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47750 * 2 1 4 4 N 1.46503 * 109.46828 * 240.00121 * 2 1 3 5 5 C 1.34780 * 120.00169 * 85.00283 * 4 2 1 6 6 O 1.21283 * 119.99409 * 359.97438 * 5 4 2 7 7 C 1.50698 * 120.00071 * 180.02562 * 5 4 2 8 8 H 1.08998 * 115.55252 * 34.41497 * 7 5 4 9 9 C 1.53001 * 117.51596 * 248.71579 * 7 5 4 10 10 C 1.52998 * 117.49621 * 180.08513 * 7 5 4 11 11 H 1.08998 * 117.49992 * 0.02562 * 10 7 5 12 12 C 1.50698 * 117.49851 * 215.00027 * 10 7 5 13 13 C 1.38233 * 120.00104 * 299.72998 * 12 10 7 14 14 C 1.38240 * 120.00169 * 179.79020 * 13 12 10 15 15 C 1.38230 * 119.99714 * 0.43645 * 14 13 12 16 16 C 1.38235 * 120.00110 * 359.81663 * 15 14 13 17 17 C 1.38231 * 119.99962 * 120.00425 * 12 10 7 18 18 C 1.53003 * 109.47033 * 120.00493 * 2 1 3 19 19 C 1.53941 * 113.74022 * 281.83128 * 18 2 1 20 20 N 1.47574 * 86.11752 * 222.04920 * 19 18 2 21 21 C 1.36944 * 134.49362 * 204.63901 * 20 19 18 22 22 H 1.07997 * 120.00123 * 179.97438 * 21 20 19 23 23 C 1.38806 * 119.99767 * 0.02562 * 21 20 19 24 24 N 1.31622 * 120.00310 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99971 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47229 * 59.99385 * 25 23 21 27 27 H 1.48501 * 109.47267 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.46841 * 299.99836 * 25 23 21 29 29 C 1.47580 * 91.01669 * 24.63989 * 20 19 18 30 30 H 1.09003 * 109.46612 * 295.53590 * 1 2 3 31 31 H 1.09001 * 109.47157 * 55.52959 * 1 2 3 32 32 H 1.08996 * 109.47371 * 175.53007 * 1 2 3 33 33 H 0.96998 * 120.00130 * 265.00433 * 4 2 1 34 34 H 1.08998 * 117.50019 * 0.02562 * 9 7 5 35 35 H 1.08998 * 117.50018 * 145.03259 * 9 7 5 36 36 H 1.08002 * 120.00138 * 359.97438 * 13 12 10 37 37 H 1.07996 * 119.99919 * 180.27723 * 14 13 12 38 38 H 1.08005 * 120.00252 * 179.83763 * 15 14 13 39 39 H 1.08004 * 120.00343 * 179.97438 * 16 15 14 40 40 H 1.07995 * 120.00270 * 359.97438 * 17 12 10 41 41 H 1.08995 * 112.94393 * 53.56562 * 18 2 1 42 42 H 1.09002 * 113.76846 * 336.35192 * 19 18 2 43 43 H 1.08997 * 113.77052 * 107.74516 * 19 18 2 44 44 H 0.97000 * 120.00208 * 180.02562 * 24 23 21 45 45 H 1.08991 * 113.76983 * 221.05722 * 29 20 19 46 46 H 1.09001 * 113.86841 * 89.67266 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8582 1.1584 -2.4117 7 6 2.6487 -0.7288 -3.5878 8 1 2.3496 -1.7726 -3.6828 9 6 4.0314 -0.3394 -4.1145 10 6 2.7746 0.0899 -4.8742 11 1 2.4950 1.1425 -4.8303 12 6 2.4756 -0.6087 -6.1756 13 6 3.2203 -1.7092 -6.5564 14 6 2.9432 -2.3526 -7.7481 15 6 1.9273 -1.8900 -8.5633 16 6 1.1859 -0.7863 -8.1851 17 6 1.4603 -0.1454 -6.9913 18 6 2.0400 -0.7214 1.2492 19 6 1.9741 0.1326 2.5283 20 7 3.3071 -0.4167 2.8434 21 6 4.0157 -0.6128 3.9988 22 1 5.0038 -1.0470 3.9591 23 6 3.4636 -0.2544 5.2208 24 7 2.2592 0.2744 5.2692 25 14 4.4299 -0.5224 6.7969 26 1 5.6985 0.2471 6.7367 27 1 3.6251 -0.0595 7.9558 28 1 4.7346 -1.9677 6.9509 29 6 3.5698 -0.6700 1.4135 30 1 -0.3633 0.4430 0.9273 31 1 -0.3633 0.5816 -0.8472 32 1 -0.3634 -1.0245 -0.0801 33 1 2.2489 -1.6318 -1.1527 34 1 4.5787 0.4305 -3.5707 35 1 4.6420 -1.1271 -4.5561 36 1 4.0168 -2.0682 -5.9214 37 1 3.5222 -3.2151 -8.0434 38 1 1.7124 -2.3910 -9.4957 39 1 0.3924 -0.4245 -8.8222 40 1 0.8810 0.7168 -6.6958 41 1 1.6196 -1.7204 1.3644 42 1 1.9747 1.2063 2.3402 43 1 1.1951 -0.1781 3.2244 44 1 1.8736 0.5252 6.1232 45 1 4.0647 -1.6215 1.2195 46 1 4.0393 0.1669 0.8963 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970753196.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:12 Heat of formation + Delta-G solvation = 43.465268 kcal Electronic energy + Delta-G solvation = -24993.262960 eV Core-core repulsion = 21463.258176 eV Total energy + Delta-G solvation = -3530.004784 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.38212 -40.35249 -39.58876 -37.35785 -36.08791 -34.14611 -32.08948 -31.78144 -31.24545 -29.34259 -26.76180 -25.98544 -25.20848 -24.67136 -23.27274 -22.56473 -21.46625 -21.17353 -20.44033 -18.79285 -18.51079 -17.74505 -17.28553 -16.82451 -16.16945 -16.12196 -15.79797 -15.74026 -15.47988 -14.98882 -14.91748 -14.63275 -14.22013 -14.11180 -13.78324 -13.57016 -13.36652 -13.28449 -13.09249 -12.96227 -12.83748 -12.66502 -12.41335 -12.18184 -12.03823 -11.93060 -11.82257 -11.66985 -11.51787 -11.39053 -11.22673 -10.86393 -10.81740 -10.03388 -9.78408 -9.46784 -8.93055 -7.90994 -5.24937 0.40322 0.53906 1.44835 1.48564 1.53906 1.54718 2.13953 2.47152 2.72495 3.13284 3.29048 3.38930 3.53048 3.68940 3.77228 3.90682 3.97218 4.02659 4.14054 4.20120 4.28019 4.30304 4.33699 4.45475 4.56074 4.63517 4.73901 4.76837 4.79183 4.84195 4.85847 4.94321 4.98851 5.08287 5.10983 5.18481 5.21903 5.24035 5.28996 5.52628 5.56210 5.62561 5.64801 5.67172 5.74961 5.93737 6.15105 6.63527 6.91393 7.30990 7.60242 8.55983 9.25806 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.032622 B = 0.002172 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.098604 B =12885.359452 C =13351.900767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.162 3.838 3 H 0.058 0.942 4 N -0.703 5.703 5 C 0.538 3.462 6 O -0.588 6.588 7 C -0.173 4.173 8 H 0.149 0.851 9 C -0.130 4.130 10 C -0.091 4.091 11 H 0.103 0.897 12 C -0.063 4.063 13 C -0.125 4.125 14 C -0.123 4.123 15 C -0.131 4.131 16 C -0.126 4.126 17 C -0.130 4.130 18 C -0.108 4.108 19 C 0.170 3.830 20 N -0.644 5.644 21 C -0.237 4.237 22 H 0.084 0.916 23 C -0.070 4.070 24 N -0.954 5.954 25 Si 0.980 3.020 26 H -0.280 1.280 27 H -0.294 1.294 28 H -0.273 1.273 29 C 0.128 3.872 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.415 0.585 34 H 0.095 0.905 35 H 0.136 0.864 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.141 0.859 39 H 0.137 0.863 40 H 0.119 0.881 41 H 0.106 0.894 42 H 0.009 0.991 43 H 0.046 0.954 44 H 0.249 0.751 45 H 0.063 0.937 46 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.554 -7.944 -28.094 29.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.057 3.943 3 H 0.076 0.924 4 N -0.353 5.353 5 C 0.326 3.674 6 O -0.468 6.468 7 C -0.194 4.194 8 H 0.167 0.833 9 C -0.167 4.167 10 C -0.109 4.109 11 H 0.121 0.879 12 C -0.063 4.063 13 C -0.143 4.143 14 C -0.141 4.141 15 C -0.149 4.149 16 C -0.144 4.144 17 C -0.148 4.148 18 C -0.128 4.128 19 C 0.044 3.956 20 N -0.370 5.370 21 C -0.365 4.365 22 H 0.102 0.898 23 C -0.262 4.262 24 N -0.603 5.603 25 Si 0.808 3.192 26 H -0.206 1.206 27 H -0.221 1.221 28 H -0.198 1.198 29 C 0.004 3.996 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.252 0.748 34 H 0.113 0.887 35 H 0.154 0.846 36 H 0.159 0.841 37 H 0.162 0.838 38 H 0.159 0.841 39 H 0.154 0.846 40 H 0.137 0.863 41 H 0.124 0.876 42 H 0.027 0.973 43 H 0.065 0.935 44 H 0.058 0.942 45 H 0.082 0.918 46 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -0.695 -7.122 -27.768 28.675 hybrid contribution 0.288 0.278 1.411 1.467 sum -0.407 -6.844 -26.357 27.234 Atomic orbital electron populations 1.22042 0.94270 1.02874 1.01824 1.20736 0.94582 0.95827 0.83200 0.92369 1.45862 1.66207 1.14726 1.08506 1.20148 0.76417 0.86257 0.84552 1.90678 1.52343 1.18118 1.85697 1.22337 1.04023 1.01416 0.91599 0.83314 1.23237 0.88923 1.03874 1.00683 1.20971 1.02807 0.98680 0.88483 0.87898 1.19169 0.96644 0.96282 0.94208 1.21314 0.99987 0.95290 0.97672 1.21467 0.97938 1.00344 0.94304 1.21501 0.96007 0.96726 1.00631 1.21398 1.00303 0.96314 0.96406 1.21182 0.97709 1.00694 0.95216 1.23443 0.96086 1.00330 0.92939 1.22092 0.88315 0.93627 0.91580 1.46378 1.17261 1.72145 1.01246 1.19405 0.98766 1.34249 0.84124 0.89809 1.25671 0.98166 1.01595 1.00813 1.69999 1.16806 1.48766 1.24749 0.85128 0.77379 0.78170 0.78503 1.20572 1.22060 1.19820 1.22666 0.94782 0.98471 0.83719 0.91863 0.93180 0.90664 0.74783 0.88659 0.84587 0.84079 0.83821 0.84098 0.84551 0.86297 0.87585 0.97323 0.93531 0.94223 0.91837 0.95106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.23 9.46 71.98 0.68 -3.55 16 2 C 0.16 4.94 2.29 44.99 0.10 5.04 16 3 H 0.06 2.15 7.48 -2.39 -0.02 2.13 16 4 N -0.70 -16.95 4.95 -442.52 -2.19 -19.14 16 5 C 0.54 14.21 7.58 87.66 0.66 14.87 16 6 O -0.59 -20.85 15.92 -3.04 -0.05 -20.90 16 7 C -0.17 -3.17 5.82 -11.54 -0.07 -3.24 16 8 H 0.15 1.98 8.14 -2.39 -0.02 1.96 16 9 C -0.13 -2.05 9.56 30.60 0.29 -1.76 16 10 C -0.09 -1.74 5.55 -11.54 -0.06 -1.81 16 11 H 0.10 2.46 7.67 -2.39 -0.02 2.44 16 12 C -0.06 -1.09 5.61 -19.87 -0.11 -1.20 16 13 C -0.12 -1.70 9.30 22.27 0.21 -1.49 16 14 C -0.12 -1.46 10.05 22.27 0.22 -1.24 16 15 C -0.13 -1.60 10.05 22.27 0.22 -1.37 16 16 C -0.13 -1.80 10.05 22.27 0.22 -1.58 16 17 C -0.13 -2.27 9.74 22.27 0.22 -2.05 16 18 C -0.11 -3.78 3.36 -10.13 -0.03 -3.81 16 19 C 0.17 8.13 6.90 86.48 0.60 8.72 16 20 N -0.64 -33.38 3.70 -716.89 -2.65 -36.03 16 21 C -0.24 -13.47 10.70 84.03 0.90 -12.57 16 22 H 0.08 4.51 7.83 -2.91 -0.02 4.49 16 23 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 24 N -0.95 -58.36 11.38 21.65 0.25 -58.11 16 25 Si 0.98 46.07 29.55 68.60 2.03 48.10 16 26 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 27 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 28 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 29 C 0.13 5.04 8.38 86.48 0.72 5.76 16 30 H 0.06 1.86 7.99 -2.39 -0.02 1.84 16 31 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.42 7.45 8.60 -92.71 -0.80 6.65 16 34 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.14 1.35 6.17 -2.39 -0.01 1.33 16 36 H 0.14 1.33 6.02 -2.91 -0.02 1.31 16 37 H 0.14 1.02 8.06 -2.91 -0.02 0.99 16 38 H 0.14 1.06 8.06 -2.91 -0.02 1.03 16 39 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 40 H 0.12 2.05 8.06 -2.91 -0.02 2.03 16 41 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 42 H 0.01 0.45 8.03 -2.39 -0.02 0.43 16 43 H 0.05 2.47 7.15 -2.39 -0.02 2.46 16 44 H 0.25 14.80 8.31 -92.71 -0.77 14.02 16 45 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 46 H 0.03 1.24 8.10 -2.39 -0.02 1.22 16 Total: -1.00 -74.19 381.15 2.81 -71.39 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 0.18 Total: 19.51 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: 5.25 Total: -4.82 kcal Atomic # 7 Polarization: -108.68 SS G_CDS: -4.59 Total: -113.28 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.05 Total: -20.90 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -74.19 2.81 -71.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970753196.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.852 kcal (2) G-P(sol) polarization free energy of solvation -74.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds