Wall clock time and date at job start Tue Mar 31 2020 10:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 C 1.50697 * 109.47463 * 295.00146 * 4 2 1 6 6 O 1.21287 * 119.99710 * 359.97438 * 5 4 2 7 7 N 1.34781 * 120.00631 * 179.97438 * 5 4 2 8 8 C 1.47862 * 126.93929 * 0.02865 * 7 5 4 9 9 C 1.56022 * 105.10370 * 181.97822 * 8 7 5 10 10 H 1.08992 * 116.25172 * 158.83629 * 9 8 7 11 11 C 1.57086 * 99.60594 * 32.80117 * 9 8 7 12 12 C 1.49283 * 126.94486 * 179.70679 * 7 5 4 13 13 H 1.09001 * 116.15144 * 16.73353 * 12 7 5 14 14 C 1.56014 * 104.09438 * 246.72243 * 12 7 5 15 15 N 1.49255 * 105.36777 * 288.94192 * 14 12 7 16 16 C 1.36934 * 127.75187 * 182.18947 * 15 14 12 17 17 H 1.08002 * 120.00162 * 179.51271 * 16 15 14 18 18 C 1.38809 * 120.00142 * 359.50314 * 16 15 14 19 19 N 1.31621 * 119.99880 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00141 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.46622 * 90.00738 * 20 18 16 22 22 H 1.48500 * 109.47282 * 210.00369 * 20 18 16 23 23 H 1.48495 * 109.47133 * 330.00767 * 20 18 16 24 24 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 25 25 C 1.38236 * 119.99426 * 299.72354 * 24 2 1 26 26 C 1.38243 * 119.99511 * 179.80793 * 25 24 2 27 27 C 1.38237 * 119.99964 * 0.40206 * 26 25 24 28 28 C 1.38234 * 120.00048 * 359.85163 * 27 26 25 29 29 C 1.38230 * 120.00341 * 119.99580 * 24 2 1 30 30 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 33 33 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 34 34 H 1.09006 * 109.47717 * 174.99599 * 4 2 1 35 35 H 1.08999 * 110.31746 * 300.87977 * 8 7 5 36 36 H 1.09004 * 110.32066 * 63.06698 * 8 7 5 37 37 H 1.09002 * 112.36233 * 64.27756 * 11 9 8 38 38 H 1.08994 * 112.36570 * 191.62427 * 11 9 8 39 39 H 1.08997 * 110.31745 * 47.67765 * 14 12 7 40 40 H 1.09003 * 110.31590 * 169.86328 * 14 12 7 41 41 H 0.97005 * 119.99831 * 179.97438 * 19 18 16 42 42 H 1.07995 * 120.00406 * 0.02562 * 25 24 2 43 43 H 1.08000 * 119.99489 * 180.23239 * 26 25 24 44 44 H 1.08001 * 119.99634 * 179.83533 * 27 26 25 45 45 H 1.07999 * 119.99990 * 179.97438 * 28 27 26 46 46 H 1.08005 * 119.99886 * 359.97438 * 29 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 1.6414 0.0569 2.4765 6 8 1.0117 1.0873 2.3633 7 7 1.9846 -0.3920 3.7002 8 6 2.7461 -1.6198 4.0149 9 6 2.8077 -1.6717 5.5731 10 1 3.0027 -2.6485 6.0155 11 6 1.4229 -1.0122 5.9122 12 6 1.6784 0.2532 5.0111 13 1 0.8954 1.0115 5.0021 14 6 3.0744 0.6865 5.5565 15 7 3.7623 -0.5827 5.9356 16 6 4.9999 -0.7282 6.5033 17 1 5.3753 -1.7141 6.7346 18 6 5.7719 0.3913 6.7815 19 7 5.3142 1.5928 6.5000 20 14 7.4605 0.1927 7.5554 21 1 8.4825 0.0606 6.4861 22 1 7.7665 1.3835 8.3882 23 1 7.4747 -1.0238 8.4069 24 6 2.0324 -0.7103 -1.2306 25 6 1.7031 -2.0354 -1.4464 26 6 2.1606 -2.6859 -2.5772 27 6 2.9542 -2.0136 -3.4878 28 6 3.2878 -0.6900 -3.2692 29 6 2.8270 -0.0385 -2.1405 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.6055 -1.7198 1.2950 34 1 3.1264 -0.7995 1.2055 35 1 2.2275 -2.4966 3.6273 36 1 3.7515 -1.5588 3.5983 37 1 0.5817 -1.6109 5.5629 38 1 1.3319 -0.7585 6.9683 39 1 3.6409 1.2011 4.7804 40 1 2.9569 1.3289 6.4293 41 1 5.8536 2.3752 6.6947 42 1 1.0855 -2.5615 -0.7336 43 1 1.9002 -3.7201 -2.7478 44 1 3.3138 -2.5226 -4.3699 45 1 3.9082 -0.1650 -3.9804 46 1 3.0875 0.9957 -1.9697 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032766627.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:29 Heat of formation + Delta-G solvation = 38.508299 kcal Electronic energy + Delta-G solvation = -26262.465883 eV Core-core repulsion = 22732.246148 eV Total energy + Delta-G solvation = -3530.219734 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.20818 -39.47845 -37.95980 -34.89376 -33.57552 -31.62221 -31.01231 -29.91020 -29.09615 -28.54876 -27.38769 -25.20091 -23.87693 -23.22773 -22.60671 -20.94572 -19.87320 -19.70974 -18.33466 -17.39352 -16.81076 -16.21444 -15.89241 -15.27291 -15.20314 -14.98480 -14.48115 -14.01918 -13.80566 -13.65000 -13.48055 -13.34432 -12.89314 -12.86103 -12.39485 -12.15188 -12.01976 -11.66091 -11.64815 -11.37630 -11.31595 -11.14178 -11.04405 -10.87052 -10.83110 -10.76272 -10.63633 -10.56819 -10.26986 -10.08055 -9.63247 -9.32301 -9.01795 -8.78733 -8.71897 -7.98076 -6.94085 -5.78493 -3.12416 1.26191 1.30234 3.07832 3.36339 3.40873 3.41159 3.43761 3.70930 4.40433 4.58995 4.69257 4.87719 4.93589 5.00195 5.04309 5.14819 5.18294 5.24073 5.35647 5.41286 5.44136 5.51808 5.55671 5.62891 5.66298 5.74766 5.79816 5.91337 5.92733 5.94674 6.04133 6.18822 6.20024 6.28112 6.33372 6.40168 6.40618 6.47089 6.50307 6.58412 6.62861 6.69782 6.91159 7.38555 7.45418 7.68527 8.05419 8.13611 8.63103 9.06454 9.69211 10.39675 11.34600 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015802 B = 0.003291 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.452008 B = 8507.032409 C = 9297.348291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.036 4.036 3 H 0.086 0.914 4 C -0.127 4.127 5 C 0.528 3.472 6 O -0.554 6.554 7 N -0.607 5.607 8 C 0.084 3.916 9 C 0.139 3.861 10 H 0.104 0.896 11 C -0.152 4.152 12 C 0.099 3.901 13 H 0.114 0.886 14 C 0.173 3.827 15 N -0.598 5.598 16 C -0.230 4.230 17 H 0.081 0.919 18 C -0.006 4.006 19 N -0.919 5.919 20 Si 0.912 3.088 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C -0.071 4.071 25 C -0.115 4.115 26 C -0.120 4.120 27 C -0.129 4.129 28 C -0.119 4.119 29 C -0.116 4.116 30 H 0.081 0.919 31 H 0.047 0.953 32 H 0.051 0.949 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.053 0.947 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.083 0.917 39 H 0.048 0.952 40 H 0.055 0.945 41 H 0.254 0.746 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.118 0.882 45 H 0.120 0.880 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.344 -8.322 -14.815 18.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.055 4.055 3 H 0.104 0.896 4 C -0.166 4.166 5 C 0.317 3.683 6 O -0.434 6.434 7 N -0.340 5.340 8 C -0.041 4.041 9 C 0.030 3.970 10 H 0.122 0.878 11 C -0.192 4.192 12 C -0.004 4.004 13 H 0.131 0.869 14 C 0.048 3.952 15 N -0.322 5.322 16 C -0.358 4.358 17 H 0.099 0.901 18 C -0.203 4.203 19 N -0.566 5.566 20 Si 0.743 3.257 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.206 1.206 24 C -0.071 4.071 25 C -0.133 4.133 26 C -0.138 4.138 27 C -0.147 4.147 28 C -0.137 4.137 29 C -0.134 4.134 30 H 0.100 0.900 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.139 0.861 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.138 0.862 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.448 -7.581 -14.860 18.699 hybrid contribution 1.154 -0.106 0.284 1.194 sum -7.294 -7.687 -14.576 18.020 Atomic orbital electron populations 1.21944 0.93761 1.01463 1.03173 1.19896 0.96669 0.99262 0.89672 0.89555 1.21677 1.02971 0.99786 0.92210 1.20121 0.79283 0.85463 0.83416 1.90622 1.41759 1.24974 1.86044 1.49254 1.54025 1.25426 1.05325 1.23297 0.95404 0.85313 1.00124 1.23152 0.89456 0.94007 0.90377 0.87819 1.24215 0.97812 0.97253 0.99908 1.24365 0.99755 0.95638 0.80597 0.86861 1.22126 0.86665 0.88191 0.98230 1.45534 1.14831 0.99899 1.71940 1.19029 0.90355 0.93100 1.33327 0.90108 1.24817 0.98780 0.95282 1.01405 1.69908 1.37201 0.96975 1.52471 0.86122 0.83911 0.76960 0.78745 1.21614 1.21680 1.20633 1.19972 0.96860 0.94184 0.96059 1.21023 1.00260 0.94356 0.97631 1.21129 0.98244 0.99776 0.94664 1.21117 0.99114 0.94940 0.99540 1.21138 1.00021 0.94982 0.97596 1.21140 0.97757 1.00123 0.94381 0.90035 0.93344 0.93021 0.89360 0.89068 0.92922 0.91107 0.91624 0.89890 0.93376 0.92696 0.93588 0.86139 0.86259 0.86391 0.86225 0.86000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 8.75 37.16 0.33 -1.49 16 2 C -0.04 -0.47 2.21 -91.77 -0.20 -0.67 16 3 H 0.09 1.23 7.69 -51.93 -0.40 0.83 16 4 C -0.13 -1.73 4.20 -27.89 -0.12 -1.85 16 5 C 0.53 9.26 7.61 -10.98 -0.08 9.18 16 6 O -0.55 -11.14 14.31 5.55 0.08 -11.06 16 7 N -0.61 -10.94 2.95 -156.57 -0.46 -11.40 16 8 C 0.08 1.40 6.00 -1.68 -0.01 1.39 16 9 C 0.14 2.54 5.47 -62.55 -0.34 2.20 16 10 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 11 C -0.15 -2.54 6.84 -22.10 -0.15 -2.69 16 12 C 0.10 1.89 5.25 -62.36 -0.33 1.57 16 13 H 0.11 2.11 8.06 -51.93 -0.42 1.69 16 14 C 0.17 4.11 4.83 -0.90 0.00 4.11 16 15 N -0.60 -14.26 3.07 -155.22 -0.48 -14.74 16 16 C -0.23 -6.09 10.38 -15.06 -0.16 -6.24 16 17 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 18 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 19 N -0.92 -26.74 10.69 55.49 0.59 -26.14 16 20 Si 0.91 21.62 29.55 -169.99 -5.02 16.60 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 C -0.07 -0.83 4.78 -104.62 -0.50 -1.33 16 25 C -0.11 -1.21 8.76 -39.58 -0.35 -1.56 16 26 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 27 C -0.13 -1.22 10.05 -39.58 -0.40 -1.62 16 28 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 29 C -0.12 -1.30 9.67 -39.59 -0.38 -1.69 16 30 H 0.08 1.20 5.95 -51.93 -0.31 0.89 16 31 H 0.05 0.53 7.40 -51.93 -0.38 0.15 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.09 1.04 7.56 -51.93 -0.39 0.64 16 34 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.05 1.32 7.72 -51.93 -0.40 0.92 16 40 H 0.05 1.44 7.53 -51.93 -0.39 1.05 16 41 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 42 H 0.12 1.13 7.16 -52.49 -0.38 0.75 16 43 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 44 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 45 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 46 H 0.12 1.26 7.95 -52.48 -0.42 0.85 16 LS Contribution 366.60 15.07 5.52 5.52 Total: -1.00 -31.11 366.60 -10.62 -41.72 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -7.26 Total: 3.59 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -3.59 Total: -4.09 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: -0.34 Total: -52.28 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.08 Total: -11.06 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.11 -10.62 -41.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032766627.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.232 kcal (2) G-P(sol) polarization free energy of solvation -31.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds