Wall clock time and date at job start Tue Mar 31 2020 10:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 C 1.50697 * 109.47463 * 295.00146 * 4 2 1 6 6 O 1.21287 * 119.99710 * 359.97438 * 5 4 2 7 7 N 1.34781 * 120.00631 * 179.97438 * 5 4 2 8 8 C 1.47862 * 126.93929 * 0.02865 * 7 5 4 9 9 C 1.56022 * 105.10370 * 181.97822 * 8 7 5 10 10 H 1.08992 * 116.25172 * 158.83629 * 9 8 7 11 11 C 1.57086 * 99.60594 * 32.80117 * 9 8 7 12 12 C 1.49283 * 126.94486 * 179.70679 * 7 5 4 13 13 H 1.09001 * 116.15144 * 16.73353 * 12 7 5 14 14 C 1.56014 * 104.09438 * 246.72243 * 12 7 5 15 15 N 1.49255 * 105.36777 * 288.94192 * 14 12 7 16 16 C 1.36934 * 127.75187 * 182.18947 * 15 14 12 17 17 H 1.08002 * 120.00162 * 179.51271 * 16 15 14 18 18 C 1.38809 * 120.00142 * 359.50314 * 16 15 14 19 19 N 1.31621 * 119.99880 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00141 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.46622 * 90.00738 * 20 18 16 22 22 H 1.48500 * 109.47282 * 210.00369 * 20 18 16 23 23 H 1.48495 * 109.47133 * 330.00767 * 20 18 16 24 24 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 25 25 C 1.38236 * 119.99426 * 299.72354 * 24 2 1 26 26 C 1.38243 * 119.99511 * 179.80793 * 25 24 2 27 27 C 1.38237 * 119.99964 * 0.40206 * 26 25 24 28 28 C 1.38234 * 120.00048 * 359.85163 * 27 26 25 29 29 C 1.38230 * 120.00341 * 119.99580 * 24 2 1 30 30 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 33 33 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 34 34 H 1.09006 * 109.47717 * 174.99599 * 4 2 1 35 35 H 1.08999 * 110.31746 * 300.87977 * 8 7 5 36 36 H 1.09004 * 110.32066 * 63.06698 * 8 7 5 37 37 H 1.09002 * 112.36233 * 64.27756 * 11 9 8 38 38 H 1.08994 * 112.36570 * 191.62427 * 11 9 8 39 39 H 1.08997 * 110.31745 * 47.67765 * 14 12 7 40 40 H 1.09003 * 110.31590 * 169.86328 * 14 12 7 41 41 H 0.97005 * 119.99831 * 179.97438 * 19 18 16 42 42 H 1.07995 * 120.00406 * 0.02562 * 25 24 2 43 43 H 1.08000 * 119.99489 * 180.23239 * 26 25 24 44 44 H 1.08001 * 119.99634 * 179.83533 * 27 26 25 45 45 H 1.07999 * 119.99990 * 179.97438 * 28 27 26 46 46 H 1.08005 * 119.99886 * 359.97438 * 29 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 1.6414 0.0569 2.4765 6 8 1.0117 1.0873 2.3633 7 7 1.9846 -0.3920 3.7002 8 6 2.7461 -1.6198 4.0149 9 6 2.8077 -1.6717 5.5731 10 1 3.0027 -2.6485 6.0155 11 6 1.4229 -1.0122 5.9122 12 6 1.6784 0.2532 5.0111 13 1 0.8954 1.0115 5.0021 14 6 3.0744 0.6865 5.5565 15 7 3.7623 -0.5827 5.9356 16 6 4.9999 -0.7282 6.5033 17 1 5.3753 -1.7141 6.7346 18 6 5.7719 0.3913 6.7815 19 7 5.3142 1.5928 6.5000 20 14 7.4605 0.1927 7.5554 21 1 8.4825 0.0606 6.4861 22 1 7.7665 1.3835 8.3882 23 1 7.4747 -1.0238 8.4069 24 6 2.0324 -0.7103 -1.2306 25 6 1.7031 -2.0354 -1.4464 26 6 2.1606 -2.6859 -2.5772 27 6 2.9542 -2.0136 -3.4878 28 6 3.2878 -0.6900 -3.2692 29 6 2.8270 -0.0385 -2.1405 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.6055 -1.7198 1.2950 34 1 3.1264 -0.7995 1.2055 35 1 2.2275 -2.4966 3.6273 36 1 3.7515 -1.5588 3.5983 37 1 0.5817 -1.6109 5.5629 38 1 1.3319 -0.7585 6.9683 39 1 3.6409 1.2011 4.7804 40 1 2.9569 1.3289 6.4293 41 1 5.8536 2.3752 6.6947 42 1 1.0855 -2.5615 -0.7336 43 1 1.9002 -3.7201 -2.7478 44 1 3.3138 -2.5226 -4.3699 45 1 3.9082 -0.1650 -3.9804 46 1 3.0875 0.9957 -1.9697 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032766627.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:28 Heat of formation + Delta-G solvation = 22.329650 kcal Electronic energy + Delta-G solvation = -26263.167441 eV Core-core repulsion = 22732.246148 eV Total energy + Delta-G solvation = -3530.921293 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.61072 -40.45364 -39.32227 -35.92502 -35.39705 -33.33332 -31.76165 -31.14617 -30.39693 -30.19829 -28.55357 -26.96651 -25.27563 -24.42651 -23.40831 -22.29862 -21.39292 -20.88694 -19.87067 -18.82754 -18.12154 -17.45275 -17.34784 -16.61028 -16.52596 -15.98714 -15.83486 -15.55948 -15.05481 -14.92208 -14.68389 -14.27800 -14.05761 -13.92061 -13.76525 -13.48169 -13.37386 -13.23155 -13.06816 -12.84054 -12.71826 -12.68432 -12.34324 -12.21571 -12.15287 -12.09735 -12.03596 -11.84597 -11.72322 -11.56662 -11.50487 -10.86669 -10.62245 -9.77550 -9.57837 -9.48867 -8.90704 -7.85266 -5.20131 0.48135 0.54437 1.46522 1.47910 1.56572 1.68609 2.04851 2.48308 2.92403 3.33094 3.35453 3.53865 3.74628 3.78949 3.92047 4.01692 4.05152 4.13282 4.19087 4.22274 4.23186 4.34620 4.46102 4.58136 4.64743 4.66929 4.68574 4.73226 4.82661 4.87188 4.96262 5.02728 5.03511 5.14530 5.15940 5.19039 5.24713 5.26539 5.40050 5.44514 5.53986 5.63347 5.63541 5.66920 5.78698 6.07893 6.16755 6.72452 7.00307 7.23038 7.69720 8.42665 9.27079 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015802 B = 0.003291 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.452008 B = 8507.032409 C = 9297.348291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.031 4.031 3 H 0.059 0.941 4 C -0.115 4.115 5 C 0.521 3.479 6 O -0.586 6.586 7 N -0.611 5.611 8 C 0.092 3.908 9 C 0.132 3.868 10 H 0.133 0.867 11 C -0.129 4.129 12 C 0.101 3.899 13 H 0.114 0.886 14 C 0.185 3.815 15 N -0.618 5.618 16 C -0.227 4.227 17 H 0.097 0.903 18 C -0.073 4.073 19 N -0.958 5.958 20 Si 0.977 3.023 21 H -0.291 1.291 22 H -0.302 1.302 23 H -0.261 1.261 24 C -0.084 4.084 25 C -0.120 4.120 26 C -0.123 4.123 27 C -0.132 4.132 28 C -0.127 4.127 29 C -0.137 4.137 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.119 0.881 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.050 0.950 37 H 0.105 0.895 38 H 0.078 0.922 39 H -0.004 1.004 40 H 0.016 0.984 41 H 0.243 0.757 42 H 0.136 0.864 43 H 0.145 0.855 44 H 0.142 0.858 45 H 0.136 0.864 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.175 -12.331 -16.050 22.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.050 4.050 3 H 0.078 0.922 4 C -0.154 4.154 5 C 0.312 3.688 6 O -0.468 6.468 7 N -0.344 5.344 8 C -0.032 4.032 9 C 0.026 3.974 10 H 0.151 0.849 11 C -0.168 4.168 12 C -0.002 4.002 13 H 0.132 0.868 14 C 0.060 3.940 15 N -0.343 5.343 16 C -0.356 4.356 17 H 0.115 0.885 18 C -0.266 4.266 19 N -0.608 5.608 20 Si 0.806 3.194 21 H -0.218 1.218 22 H -0.229 1.229 23 H -0.186 1.186 24 C -0.084 4.084 25 C -0.138 4.138 26 C -0.140 4.140 27 C -0.149 4.149 28 C -0.145 4.145 29 C -0.155 4.155 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.137 0.863 34 H 0.106 0.894 35 H 0.122 0.878 36 H 0.068 0.932 37 H 0.123 0.877 38 H 0.097 0.903 39 H 0.014 0.986 40 H 0.034 0.966 41 H 0.052 0.948 42 H 0.154 0.846 43 H 0.162 0.838 44 H 0.160 0.840 45 H 0.154 0.846 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.298 -11.659 -16.106 21.950 hybrid contribution 1.391 1.127 0.601 1.888 sum -7.907 -10.532 -15.505 20.344 Atomic orbital electron populations 1.21856 0.93338 1.02398 1.02051 1.19772 0.96965 0.98007 0.90228 0.92214 1.21666 1.02825 1.00619 0.90293 1.20863 0.78509 0.85278 0.84149 1.90613 1.43179 1.26464 1.86503 1.49354 1.54219 1.25840 1.05033 1.23208 0.95014 0.86309 0.98706 1.23584 0.88607 0.93735 0.91500 0.84914 1.24111 0.98133 0.95413 0.99117 1.24166 0.96651 0.97200 0.82185 0.86836 1.21740 0.89009 0.88089 0.95210 1.45790 1.15179 1.01605 1.71753 1.19536 0.91228 0.93470 1.31337 0.88546 1.25667 1.02558 0.95195 1.03154 1.70155 1.38328 0.97540 1.54758 0.85091 0.79643 0.76947 0.77747 1.21796 1.22923 1.18559 1.19873 0.97899 0.94971 0.95666 1.21220 1.00407 0.93740 0.98451 1.21475 0.97561 1.00949 0.94045 1.21481 0.98518 0.94667 1.00282 1.21392 1.00084 0.95628 0.97394 1.21280 0.98541 1.00338 0.95315 0.92571 0.91284 0.92653 0.86254 0.89364 0.87850 0.93184 0.87660 0.90331 0.98591 0.96571 0.94797 0.84631 0.83757 0.84014 0.84641 0.86495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 8.75 71.98 0.63 -2.70 16 2 C -0.03 -0.78 2.21 -11.54 -0.03 -0.80 16 3 H 0.06 1.80 7.69 -2.39 -0.02 1.78 16 4 C -0.11 -2.97 4.20 29.84 0.13 -2.84 16 5 C 0.52 18.08 7.61 87.66 0.67 18.75 16 6 O -0.59 -24.15 14.31 -3.05 -0.04 -24.19 16 7 N -0.61 -21.40 2.95 -767.65 -2.26 -23.67 16 8 C 0.09 2.81 6.00 87.17 0.52 3.33 16 9 C 0.13 4.47 5.47 46.93 0.26 4.73 16 10 H 0.13 3.75 8.14 -2.39 -0.02 3.73 16 11 C -0.13 -3.94 6.84 33.60 0.23 -3.71 16 12 C 0.10 3.88 5.25 47.06 0.25 4.13 16 13 H 0.11 4.32 8.06 -2.39 -0.02 4.30 16 14 C 0.19 9.27 4.83 86.89 0.42 9.69 16 15 N -0.62 -29.65 3.07 -644.98 -1.98 -31.63 16 16 C -0.23 -12.02 10.38 84.03 0.87 -11.15 16 17 H 0.10 4.69 7.83 -2.91 -0.02 4.67 16 18 C -0.07 -4.13 5.49 84.86 0.47 -3.67 16 19 N -0.96 -58.89 10.69 21.65 0.23 -58.66 16 20 Si 0.98 45.36 29.55 68.60 2.03 47.38 16 21 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 22 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 23 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 24 C -0.08 -1.86 4.78 -19.86 -0.09 -1.96 16 25 C -0.12 -2.20 8.76 22.27 0.20 -2.00 16 26 C -0.12 -1.94 10.05 22.27 0.22 -1.72 16 27 C -0.13 -2.11 10.05 22.27 0.22 -1.88 16 28 C -0.13 -2.34 10.05 22.27 0.22 -2.12 16 29 C -0.14 -3.02 9.67 22.27 0.22 -2.80 16 30 H 0.06 1.64 5.95 -2.39 -0.01 1.63 16 31 H 0.07 1.34 7.40 -2.39 -0.02 1.32 16 32 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.12 2.34 7.56 -2.39 -0.02 2.33 16 34 H 0.09 2.37 8.14 -2.38 -0.02 2.36 16 35 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 38 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 39 H 0.00 -0.25 7.72 -2.39 -0.02 -0.27 16 40 H 0.02 0.91 7.53 -2.39 -0.02 0.89 16 41 H 0.24 14.74 8.31 -92.70 -0.77 13.97 16 42 H 0.14 1.99 7.16 -2.91 -0.02 1.97 16 43 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 44 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 45 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 46 H 0.12 2.55 7.95 -2.91 -0.02 2.53 16 Total: -1.00 -72.43 366.60 4.32 -68.11 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.95 Total: 19.37 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: 5.40 Total: 3.28 kcal Atomic # 7 Polarization: -109.94 SS G_CDS: -4.01 Total: -113.95 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.04 Total: -24.19 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -72.43 4.32 -68.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032766627.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.437 kcal (2) G-P(sol) polarization free energy of solvation -72.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds