Wall clock time and date at job start Tue Mar 31 2020 11:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32683 * 1 3 3 C 1.47664 * 119.99715 * 2 1 4 4 C 1.39712 * 119.99822 * 179.97438 * 3 2 1 5 5 C 1.37597 * 120.01023 * 180.02562 * 4 3 2 6 6 C 1.39745 * 119.99440 * 359.97438 * 5 4 3 7 7 C 1.47689 * 120.00568 * 179.97438 * 6 5 4 8 8 O 1.21576 * 120.00089 * 27.31488 * 7 6 5 9 9 N 1.34772 * 119.99840 * 207.31061 * 7 6 5 10 10 C 1.46497 * 120.00377 * 2.48784 * 9 7 6 11 11 C 1.53002 * 109.47156 * 254.70480 * 10 9 7 12 12 C 1.46509 * 119.99801 * 182.48610 * 9 7 6 13 13 H 1.09001 * 110.77439 * 155.68991 * 12 9 7 14 14 C 1.55159 * 110.71869 * 278.93013 * 12 9 7 15 15 C 1.55128 * 101.48214 * 82.69628 * 14 12 9 16 16 N 1.47426 * 104.72348 * 37.29392 * 15 14 12 17 17 C 1.36939 * 125.64742 * 155.81704 * 16 15 14 18 18 H 1.08002 * 120.00094 * 179.69478 * 17 16 15 19 19 C 1.38809 * 120.00010 * 359.41398 * 17 16 15 20 20 N 1.31622 * 119.99944 * 0.27447 * 19 17 16 21 21 Si 1.86797 * 119.99936 * 180.27830 * 19 17 16 22 22 H 1.48501 * 109.47481 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47301 * 120.00027 * 21 19 17 24 24 H 1.48500 * 109.46968 * 239.99954 * 21 19 17 25 25 C 1.47019 * 108.70326 * 335.55180 * 16 15 14 26 26 C 1.39745 * 119.99132 * 0.24998 * 6 5 4 27 27 C 1.37601 * 119.99555 * 359.51340 * 26 6 5 28 28 H 1.08006 * 120.00059 * 180.02562 * 1 2 3 29 29 H 1.08002 * 120.00173 * 0.02562 * 1 2 3 30 30 H 1.07996 * 120.00520 * 179.97438 * 2 1 3 31 31 H 1.08002 * 119.99765 * 0.02562 * 4 3 2 32 32 H 1.07994 * 120.00508 * 179.97438 * 5 4 3 33 33 H 1.09000 * 109.46907 * 14.70626 * 10 9 7 34 34 H 1.09000 * 109.47315 * 134.70696 * 10 9 7 35 35 H 1.08998 * 109.47251 * 60.00236 * 11 10 9 36 36 H 1.09007 * 109.47079 * 179.97438 * 11 10 9 37 37 H 1.09000 * 109.47332 * 299.99886 * 11 10 9 38 38 H 1.08995 * 110.99923 * 200.93111 * 14 12 9 39 39 H 1.08993 * 111.00382 * 324.75359 * 14 12 9 40 40 H 1.09002 * 110.49730 * 278.45299 * 15 14 12 41 41 H 1.09005 * 110.34037 * 156.05808 * 15 14 12 42 42 H 0.97001 * 120.00197 * 179.97438 * 20 19 17 43 43 H 1.08995 * 109.88228 * 120.70507 * 25 16 15 44 44 H 1.09000 * 109.88119 * 241.71311 * 25 16 15 45 45 H 1.08004 * 120.00378 * 179.72436 * 26 6 5 46 46 H 1.08001 * 120.00241 * 180.22795 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3268 0.0000 0.0000 3 6 2.0651 1.2788 0.0000 4 6 3.4622 1.2789 0.0005 5 6 4.1504 2.4704 0.0011 6 6 3.4517 3.6807 0.0005 7 6 4.1901 4.9597 0.0017 8 8 5.3048 5.0186 -0.4802 9 7 3.6282 6.0617 0.5368 10 6 2.3079 5.9788 1.1660 11 6 1.2627 6.6089 0.2432 12 6 4.3380 7.3425 0.4893 13 1 3.6374 8.1752 0.5515 14 6 5.3938 7.4274 1.6230 15 6 6.5863 6.6614 0.9924 16 7 6.5623 7.0384 -0.4327 17 6 7.6344 7.0093 -1.2841 18 1 7.5121 7.3017 -2.3166 19 6 8.8796 6.6097 -0.8188 20 7 9.0287 6.2535 0.4395 21 14 10.3437 6.5775 -1.9783 22 1 9.9153 7.0211 -3.3292 23 1 11.3984 7.4907 -1.4695 24 1 10.8817 5.1957 -2.0580 25 6 5.1952 7.4445 -0.7899 26 6 2.0543 3.6805 0.0047 27 6 1.3665 2.4888 -0.0007 28 1 -0.5400 -0.9354 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8669 -0.9352 0.0004 31 1 4.0022 0.3435 0.0005 32 1 5.2303 2.4703 0.0019 33 1 2.0542 4.9334 1.3419 34 1 2.3237 6.5136 2.1156 35 1 1.2468 6.0741 -0.7064 36 1 0.2802 6.5469 0.7112 37 1 1.5164 7.6543 0.0673 38 1 5.6583 8.4636 1.8337 39 1 5.0411 6.9253 2.5238 40 1 6.4501 5.5856 1.1025 41 1 7.5237 6.9750 1.4520 42 1 9.8987 5.9739 0.7647 43 1 5.1969 8.4719 -1.1540 44 1 4.7998 6.7799 -1.5580 45 1 1.5141 4.6158 0.0088 46 1 0.2864 2.4886 -0.0012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033962738.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:04 Heat of formation + Delta-G solvation = 98.042969 kcal Electronic energy + Delta-G solvation = -27102.012611 eV Core-core repulsion = 23574.374494 eV Total energy + Delta-G solvation = -3527.638117 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.55658 -38.76921 -36.25680 -35.74582 -34.09296 -32.31757 -31.01144 -30.16006 -29.60247 -28.73019 -27.08806 -24.62198 -23.94540 -23.17492 -22.53455 -21.18197 -19.92855 -19.79349 -18.59016 -17.09389 -16.81462 -16.50266 -15.74646 -15.29809 -15.05856 -14.54573 -14.37173 -14.21021 -13.92767 -13.59906 -13.23047 -13.20043 -13.08619 -12.79204 -12.41664 -12.23395 -11.97844 -11.84120 -11.61511 -11.41172 -11.34172 -11.27505 -10.80644 -10.75775 -10.69936 -10.63208 -10.34492 -9.92560 -9.91297 -9.62116 -9.35017 -8.94718 -8.88384 -8.41935 -8.22921 -7.96762 -6.46148 -5.37073 -2.73202 0.61658 1.37909 2.22172 3.33378 3.38948 3.54248 3.59135 3.61712 4.02600 4.53778 4.62615 4.71294 4.77229 4.82350 4.95251 5.08223 5.13480 5.28912 5.33882 5.40757 5.49540 5.58347 5.62661 5.67219 5.72379 5.74079 5.79111 5.87534 5.99579 6.04045 6.11638 6.15130 6.17118 6.38561 6.40548 6.48698 6.59452 6.61480 6.68757 6.78908 6.89034 6.91805 7.30194 7.82964 7.88805 7.94489 8.12313 8.64404 8.87328 9.51189 10.13086 10.80534 11.67148 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015935 B = 0.004146 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.718646 B = 6751.179484 C = 7993.521714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.115 4.115 3 C -0.052 4.052 4 C -0.115 4.115 5 C -0.063 4.063 6 C -0.115 4.115 7 C 0.523 3.477 8 O -0.446 6.446 9 N -0.603 5.603 10 C 0.080 3.920 11 C -0.179 4.179 12 C 0.135 3.865 13 H 0.081 0.919 14 C -0.161 4.161 15 C 0.162 3.838 16 N -0.577 5.577 17 C -0.195 4.195 18 H 0.071 0.929 19 C -0.018 4.018 20 N -0.924 5.924 21 Si 0.908 3.092 22 H -0.283 1.283 23 H -0.294 1.294 24 H -0.294 1.294 25 C 0.143 3.857 26 C -0.121 4.121 27 C -0.127 4.127 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.118 0.882 31 H 0.128 0.872 32 H 0.137 0.863 33 H 0.102 0.898 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.020 0.980 41 H 0.098 0.902 42 H 0.245 0.755 43 H 0.018 0.982 44 H 0.025 0.975 45 H 0.156 0.844 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.048 -7.019 3.327 22.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.133 4.133 3 C -0.052 4.052 4 C -0.133 4.133 5 C -0.081 4.081 6 C -0.118 4.118 7 C 0.309 3.691 8 O -0.316 6.316 9 N -0.338 5.338 10 C -0.043 4.043 11 C -0.237 4.237 12 C 0.032 3.968 13 H 0.099 0.901 14 C -0.201 4.201 15 C 0.037 3.963 16 N -0.301 5.301 17 C -0.324 4.324 18 H 0.089 0.911 19 C -0.212 4.212 20 N -0.575 5.575 21 Si 0.740 3.260 22 H -0.209 1.209 23 H -0.222 1.222 24 H -0.222 1.222 25 C 0.016 3.984 26 C -0.139 4.139 27 C -0.144 4.144 28 H 0.122 0.878 29 H 0.120 0.880 30 H 0.136 0.864 31 H 0.145 0.855 32 H 0.155 0.845 33 H 0.119 0.881 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.038 0.962 41 H 0.115 0.885 42 H 0.056 0.944 43 H 0.036 0.964 44 H 0.043 0.957 45 H 0.173 0.827 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -20.175 -7.022 3.024 21.575 hybrid contribution 0.569 -0.224 -0.566 0.833 sum -19.606 -7.246 2.458 21.046 Atomic orbital electron populations 1.24391 0.95666 1.02209 0.99632 1.21856 0.95235 0.95879 1.00320 1.19253 0.93385 0.93143 0.99392 1.21216 0.93108 0.98156 1.00848 1.21279 1.01059 0.90773 0.95030 1.20312 0.93710 0.94508 1.03319 1.18383 0.86577 0.83212 0.80906 1.91231 1.16045 1.83519 1.40782 1.47730 1.18280 1.08787 1.59046 1.22196 0.82863 1.03235 0.96054 1.22314 0.98755 1.02193 1.00425 1.22061 0.93204 0.83382 0.98157 0.90138 1.23533 0.98773 1.01184 0.96569 1.21932 0.95328 0.95139 0.83871 1.44152 1.02387 1.76461 1.07131 1.19025 0.86156 1.35669 0.91547 0.91139 1.24656 0.97412 1.02653 0.96488 1.69825 1.21810 1.52606 1.13217 0.86066 0.83161 0.77013 0.79758 1.20852 1.22190 1.22159 1.21326 0.87423 0.96188 0.93485 1.22254 0.93799 0.99718 0.98104 1.21200 0.99702 0.91637 1.01893 0.87838 0.87997 0.86387 0.85456 0.84531 0.88073 0.91217 0.91835 0.91531 0.91614 0.91630 0.92651 0.96172 0.88482 0.94399 0.96433 0.95710 0.82683 0.85612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.34 14.15 28.84 0.41 -0.93 16 2 C -0.11 -1.03 9.90 -37.62 -0.37 -1.40 16 3 C -0.05 -0.58 5.87 -104.95 -0.62 -1.20 16 4 C -0.12 -1.45 9.76 -39.27 -0.38 -1.84 16 5 C -0.06 -0.98 9.57 -39.25 -0.38 -1.35 16 6 C -0.12 -1.83 5.53 -104.91 -0.58 -2.41 16 7 C 0.52 10.08 6.52 -12.40 -0.08 10.00 16 8 O -0.45 -11.06 10.30 5.30 0.05 -11.00 16 9 N -0.60 -9.85 2.56 -165.18 -0.42 -10.27 16 10 C 0.08 0.91 5.59 -4.04 -0.02 0.88 16 11 C -0.18 -1.63 9.09 37.16 0.34 -1.29 16 12 C 0.14 2.45 3.54 -66.09 -0.23 2.22 16 13 H 0.08 1.20 7.47 -51.93 -0.39 0.82 16 14 C -0.16 -3.23 6.77 -24.46 -0.17 -3.39 16 15 C 0.16 4.25 5.02 -2.41 -0.01 4.24 16 16 N -0.58 -15.84 2.16 -169.94 -0.37 -16.21 16 17 C -0.19 -5.86 10.27 -15.06 -0.15 -6.01 16 18 H 0.07 2.08 7.83 -52.49 -0.41 1.67 16 19 C -0.02 -0.54 5.49 -17.43 -0.10 -0.64 16 20 N -0.92 -28.79 10.08 55.49 0.56 -28.23 16 21 Si 0.91 23.72 29.55 -169.99 -5.02 18.69 16 22 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 24 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16 25 C 0.14 3.24 5.94 -3.07 -0.02 3.23 16 26 C -0.12 -1.49 7.41 -39.25 -0.29 -1.78 16 27 C -0.13 -1.37 9.38 -39.26 -0.37 -1.73 16 28 H 0.10 0.58 8.06 -52.48 -0.42 0.16 16 29 H 0.10 0.67 6.02 -52.49 -0.32 0.36 16 30 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 31 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 32 H 0.14 2.35 7.87 -52.49 -0.41 1.94 16 33 H 0.10 1.09 4.15 -51.93 -0.22 0.88 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.62 6.84 -51.93 -0.36 0.26 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.63 7.54 -51.93 -0.39 0.24 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.02 0.59 6.15 -51.93 -0.32 0.27 16 41 H 0.10 2.87 5.85 -51.93 -0.30 2.56 16 42 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.03 0.61 6.61 -51.93 -0.34 0.26 16 45 H 0.16 1.61 2.58 -52.48 -0.14 1.48 16 46 H 0.13 1.01 6.15 -52.49 -0.32 0.69 16 LS Contribution 354.05 15.07 5.34 5.34 Total: -1.00 -35.41 354.05 -9.32 -44.73 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -6.43 Total: 0.37 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -3.03 Total: -3.41 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: -0.23 Total: -54.71 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.05 Total: -11.00 kcal Atomic # 14 Polarization: 23.72 SS G_CDS: -5.02 Total: 18.69 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.41 -9.32 -44.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033962738.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.774 kcal (2) G-P(sol) polarization free energy of solvation -35.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds