Wall clock time and date at job start Tue Mar 31 2020 11:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32683 * 1 3 3 C 1.47664 * 119.99715 * 2 1 4 4 C 1.39712 * 119.99822 * 179.97438 * 3 2 1 5 5 C 1.37597 * 120.01023 * 180.02562 * 4 3 2 6 6 C 1.39745 * 119.99440 * 359.97438 * 5 4 3 7 7 C 1.47689 * 120.00568 * 179.97438 * 6 5 4 8 8 O 1.21576 * 120.00089 * 27.31488 * 7 6 5 9 9 N 1.34772 * 119.99840 * 207.31061 * 7 6 5 10 10 C 1.46497 * 120.00377 * 2.48784 * 9 7 6 11 11 C 1.53002 * 109.47156 * 254.70480 * 10 9 7 12 12 C 1.46509 * 119.99801 * 182.48610 * 9 7 6 13 13 H 1.09001 * 110.77439 * 155.68991 * 12 9 7 14 14 C 1.55159 * 110.71869 * 278.93013 * 12 9 7 15 15 C 1.55128 * 101.48214 * 82.69628 * 14 12 9 16 16 N 1.47426 * 104.72348 * 37.29392 * 15 14 12 17 17 C 1.36939 * 125.64742 * 155.81704 * 16 15 14 18 18 H 1.08002 * 120.00094 * 179.69478 * 17 16 15 19 19 C 1.38809 * 120.00010 * 359.41398 * 17 16 15 20 20 N 1.31622 * 119.99944 * 0.27447 * 19 17 16 21 21 Si 1.86797 * 119.99936 * 180.27830 * 19 17 16 22 22 H 1.48501 * 109.47481 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47301 * 120.00027 * 21 19 17 24 24 H 1.48500 * 109.46968 * 239.99954 * 21 19 17 25 25 C 1.47019 * 108.70326 * 335.55180 * 16 15 14 26 26 C 1.39745 * 119.99132 * 0.24998 * 6 5 4 27 27 C 1.37601 * 119.99555 * 359.51340 * 26 6 5 28 28 H 1.08006 * 120.00059 * 180.02562 * 1 2 3 29 29 H 1.08002 * 120.00173 * 0.02562 * 1 2 3 30 30 H 1.07996 * 120.00520 * 179.97438 * 2 1 3 31 31 H 1.08002 * 119.99765 * 0.02562 * 4 3 2 32 32 H 1.07994 * 120.00508 * 179.97438 * 5 4 3 33 33 H 1.09000 * 109.46907 * 14.70626 * 10 9 7 34 34 H 1.09000 * 109.47315 * 134.70696 * 10 9 7 35 35 H 1.08998 * 109.47251 * 60.00236 * 11 10 9 36 36 H 1.09007 * 109.47079 * 179.97438 * 11 10 9 37 37 H 1.09000 * 109.47332 * 299.99886 * 11 10 9 38 38 H 1.08995 * 110.99923 * 200.93111 * 14 12 9 39 39 H 1.08993 * 111.00382 * 324.75359 * 14 12 9 40 40 H 1.09002 * 110.49730 * 278.45299 * 15 14 12 41 41 H 1.09005 * 110.34037 * 156.05808 * 15 14 12 42 42 H 0.97001 * 120.00197 * 179.97438 * 20 19 17 43 43 H 1.08995 * 109.88228 * 120.70507 * 25 16 15 44 44 H 1.09000 * 109.88119 * 241.71311 * 25 16 15 45 45 H 1.08004 * 120.00378 * 179.72436 * 26 6 5 46 46 H 1.08001 * 120.00241 * 180.22795 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3268 0.0000 0.0000 3 6 2.0651 1.2788 0.0000 4 6 3.4622 1.2789 0.0005 5 6 4.1504 2.4704 0.0011 6 6 3.4517 3.6807 0.0005 7 6 4.1901 4.9597 0.0017 8 8 5.3048 5.0186 -0.4802 9 7 3.6282 6.0617 0.5368 10 6 2.3079 5.9788 1.1660 11 6 1.2627 6.6089 0.2432 12 6 4.3380 7.3425 0.4893 13 1 3.6374 8.1752 0.5515 14 6 5.3938 7.4274 1.6230 15 6 6.5863 6.6614 0.9924 16 7 6.5623 7.0384 -0.4327 17 6 7.6344 7.0093 -1.2841 18 1 7.5121 7.3017 -2.3166 19 6 8.8796 6.6097 -0.8188 20 7 9.0287 6.2535 0.4395 21 14 10.3437 6.5775 -1.9783 22 1 9.9153 7.0211 -3.3292 23 1 11.3984 7.4907 -1.4695 24 1 10.8817 5.1957 -2.0580 25 6 5.1952 7.4445 -0.7899 26 6 2.0543 3.6805 0.0047 27 6 1.3665 2.4888 -0.0007 28 1 -0.5400 -0.9354 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8669 -0.9352 0.0004 31 1 4.0022 0.3435 0.0005 32 1 5.2303 2.4703 0.0019 33 1 2.0542 4.9334 1.3419 34 1 2.3237 6.5136 2.1156 35 1 1.2468 6.0741 -0.7064 36 1 0.2802 6.5469 0.7112 37 1 1.5164 7.6543 0.0673 38 1 5.6583 8.4636 1.8337 39 1 5.0411 6.9253 2.5238 40 1 6.4501 5.5856 1.1025 41 1 7.5237 6.9750 1.4520 42 1 9.8987 5.9739 0.7647 43 1 5.1969 8.4719 -1.1540 44 1 4.7998 6.7799 -1.5580 45 1 1.5141 4.6158 0.0088 46 1 0.2864 2.4886 -0.0012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033962738.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:02 Heat of formation + Delta-G solvation = 76.733672 kcal Electronic energy + Delta-G solvation = -27102.936652 eV Core-core repulsion = 23574.374494 eV Total energy + Delta-G solvation = -3528.562158 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -41.85612 -39.95056 -37.93253 -37.04990 -35.09951 -34.16463 -32.25928 -31.32146 -30.87047 -30.31212 -28.79626 -26.53249 -25.21511 -24.10876 -23.53887 -22.53041 -21.90043 -20.71491 -19.95038 -18.84875 -18.17980 -17.69919 -17.14813 -16.66680 -16.35474 -16.23194 -15.65310 -15.51693 -15.43648 -14.95083 -14.64437 -14.15072 -14.09272 -13.89366 -13.83637 -13.57754 -13.43176 -13.28657 -12.97592 -12.85627 -12.80188 -12.52843 -12.35316 -12.24347 -12.06860 -11.97596 -11.80452 -11.70359 -11.57652 -11.37803 -11.14861 -10.72437 -10.32481 -9.91868 -9.44459 -9.13412 -8.67164 -7.66356 -5.04468 -0.33863 0.38730 1.39516 1.40359 1.43730 1.53072 2.05145 2.21045 2.53741 2.94962 3.39995 3.55826 3.77994 3.83299 3.86946 3.91496 3.95327 4.10047 4.18456 4.31298 4.35303 4.37950 4.40252 4.46262 4.60416 4.71677 4.77547 4.80929 4.92141 4.95767 4.98172 5.02735 5.04606 5.12243 5.16686 5.24857 5.36338 5.39744 5.45943 5.48208 5.67847 5.82564 5.83216 5.86043 5.92259 5.94915 6.41602 6.58324 7.22319 7.48444 7.93957 8.59170 9.35688 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015935 B = 0.004146 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.718646 B = 6751.179484 C = 7993.521714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.146 4.146 3 C -0.040 4.040 4 C -0.124 4.124 5 C -0.087 4.087 6 C -0.147 4.147 7 C 0.517 3.483 8 O -0.522 6.522 9 N -0.598 5.598 10 C 0.072 3.928 11 C -0.174 4.174 12 C 0.149 3.851 13 H 0.131 0.869 14 C -0.145 4.145 15 C 0.169 3.831 16 N -0.593 5.593 17 C -0.212 4.212 18 H 0.067 0.933 19 C -0.078 4.078 20 N -0.951 5.951 21 Si 0.975 3.025 22 H -0.270 1.270 23 H -0.287 1.287 24 H -0.299 1.299 25 C 0.139 3.861 26 C -0.107 4.107 27 C -0.123 4.123 28 H 0.125 0.875 29 H 0.115 0.885 30 H 0.127 0.873 31 H 0.141 0.859 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.090 0.910 35 H 0.056 0.944 36 H 0.102 0.898 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.075 0.925 40 H -0.019 1.019 41 H 0.058 0.942 42 H 0.239 0.761 43 H 0.028 0.972 44 H 0.004 0.996 45 H 0.179 0.821 46 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.916 -7.035 3.685 27.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.164 4.164 3 C -0.040 4.040 4 C -0.142 4.142 5 C -0.106 4.106 6 C -0.150 4.150 7 C 0.305 3.695 8 O -0.397 6.397 9 N -0.332 5.332 10 C -0.049 4.049 11 C -0.231 4.231 12 C 0.046 3.954 13 H 0.149 0.851 14 C -0.185 4.185 15 C 0.044 3.956 16 N -0.317 5.317 17 C -0.342 4.342 18 H 0.085 0.915 19 C -0.269 4.269 20 N -0.603 5.603 21 Si 0.805 3.195 22 H -0.195 1.195 23 H -0.214 1.214 24 H -0.227 1.227 25 C 0.013 3.987 26 C -0.124 4.124 27 C -0.140 4.140 28 H 0.143 0.857 29 H 0.133 0.867 30 H 0.145 0.855 31 H 0.159 0.841 32 H 0.115 0.885 33 H 0.126 0.874 34 H 0.108 0.892 35 H 0.074 0.926 36 H 0.121 0.879 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.093 0.907 40 H -0.001 1.001 41 H 0.075 0.925 42 H 0.049 0.951 43 H 0.046 0.954 44 H 0.022 0.978 45 H 0.196 0.804 46 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -25.127 -7.013 3.399 26.308 hybrid contribution 1.892 -0.367 -0.679 2.044 sum -23.235 -7.380 2.719 24.530 Atomic orbital electron populations 1.24751 0.94917 1.03944 0.95177 1.21893 0.96036 0.94992 1.03479 1.19615 0.92677 0.94920 0.96772 1.21346 0.94323 0.97373 1.01176 1.21121 0.99486 0.92581 0.97455 1.20127 0.95350 0.92604 1.06930 1.19014 0.85928 0.84842 0.79685 1.91187 1.19334 1.84803 1.44395 1.47850 1.19824 1.07304 1.58215 1.22577 0.80656 1.04516 0.97168 1.22286 0.99514 1.01647 0.99696 1.21973 0.93326 0.85862 0.94286 0.85139 1.23358 0.96606 1.01004 0.97509 1.21599 0.96306 0.93706 0.83992 1.44385 1.03767 1.76105 1.07433 1.19359 0.87545 1.35336 0.91967 0.91528 1.25512 1.00174 1.02991 0.98211 1.70124 1.21828 1.53491 1.14823 0.85025 0.79608 0.76536 0.78348 1.19481 1.21385 1.22681 1.21471 0.86068 0.95610 0.95599 1.22442 0.91820 1.01547 0.96609 1.21635 1.01546 0.90518 1.00346 0.85662 0.86700 0.85511 0.84142 0.88495 0.87359 0.89184 0.92558 0.87897 0.91622 0.90223 0.90675 1.00120 0.92453 0.95115 0.95437 0.97791 0.80419 0.81628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 14.15 66.65 0.94 -0.51 16 2 C -0.15 -2.13 9.90 23.59 0.23 -1.90 16 3 C -0.04 -0.81 5.87 -20.07 -0.12 -0.93 16 4 C -0.12 -3.23 9.76 22.47 0.22 -3.01 16 5 C -0.09 -2.99 9.57 22.48 0.22 -2.77 16 6 C -0.15 -4.86 5.53 -20.05 -0.11 -4.97 16 7 C 0.52 21.01 6.52 86.74 0.57 21.57 16 8 O -0.52 -28.26 10.30 -3.95 -0.04 -28.30 16 9 N -0.60 -19.12 2.56 -794.79 -2.04 -21.16 16 10 C 0.07 1.39 5.59 86.38 0.48 1.87 16 11 C -0.17 -2.38 9.09 71.98 0.65 -1.72 16 12 C 0.15 5.24 3.54 46.18 0.16 5.40 16 13 H 0.13 3.36 7.47 -2.39 -0.02 3.35 16 14 C -0.15 -5.80 6.77 32.06 0.22 -5.58 16 15 C 0.17 9.43 5.02 86.93 0.44 9.87 16 16 N -0.59 -34.36 2.16 -691.56 -1.50 -35.86 16 17 C -0.21 -13.45 10.27 84.03 0.86 -12.59 16 18 H 0.07 4.13 7.83 -2.91 -0.02 4.11 16 19 C -0.08 -4.94 5.49 84.86 0.47 -4.47 16 20 N -0.95 -63.05 10.08 21.65 0.22 -62.83 16 21 Si 0.98 51.07 29.55 68.60 2.03 53.10 16 22 H -0.27 -13.41 7.11 99.48 0.71 -12.70 16 23 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 24 H -0.30 -15.78 7.11 99.48 0.71 -15.08 16 25 C 0.14 6.46 5.94 86.73 0.52 6.98 16 26 C -0.11 -2.41 7.41 22.48 0.17 -2.24 16 27 C -0.12 -2.23 9.38 22.48 0.21 -2.02 16 28 H 0.13 0.72 8.06 -2.91 -0.02 0.70 16 29 H 0.11 0.80 6.02 -2.91 -0.02 0.78 16 30 H 0.13 1.59 8.06 -2.91 -0.02 1.57 16 31 H 0.14 3.08 8.06 -2.91 -0.02 3.05 16 32 H 0.10 3.95 7.87 -2.91 -0.02 3.93 16 33 H 0.11 1.99 4.15 -2.39 -0.01 1.98 16 34 H 0.09 1.45 8.14 -2.39 -0.02 1.44 16 35 H 0.06 0.88 6.84 -2.39 -0.02 0.86 16 36 H 0.10 0.73 8.14 -2.38 -0.02 0.71 16 37 H 0.06 0.95 7.54 -2.39 -0.02 0.93 16 38 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 39 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 40 H -0.02 -1.20 6.15 -2.39 -0.01 -1.21 16 41 H 0.06 3.63 5.85 -2.38 -0.01 3.62 16 42 H 0.24 15.36 8.31 -92.71 -0.77 14.59 16 43 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.00 0.21 6.61 -2.39 -0.02 0.20 16 45 H 0.18 3.08 2.58 -2.91 -0.01 3.07 16 46 H 0.17 1.67 6.15 -2.91 -0.02 1.66 16 Total: -1.00 -87.34 354.05 5.78 -81.56 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: 0.99 Total: 10.50 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: 6.12 Total: 2.99 kcal Atomic # 7 Polarization: -116.53 SS G_CDS: -3.31 Total: -119.85 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -0.04 Total: -28.30 kcal Atomic # 14 Polarization: 51.07 SS G_CDS: 2.03 Total: 53.10 kcal Total: -87.34 5.78 -81.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033962738.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.293 kcal (2) G-P(sol) polarization free energy of solvation -87.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds