Wall clock time and date at job start Tue Mar 31 2020 10:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32688 * 1 3 3 C 1.47665 * 119.99790 * 2 1 4 4 C 1.39711 * 119.99225 * 180.02562 * 3 2 1 5 5 C 1.37608 * 120.00246 * 179.97438 * 4 3 2 6 6 C 1.39743 * 119.99343 * 0.02562 * 5 4 3 7 7 C 1.47685 * 120.00063 * 180.02562 * 6 5 4 8 8 O 1.21579 * 119.99939 * 230.88991 * 7 6 5 9 9 N 1.34771 * 120.00281 * 50.88654 * 7 6 5 10 10 C 1.46921 * 120.63278 * 356.21254 * 9 7 6 11 11 C 1.53193 * 108.77939 * 126.41107 * 10 9 7 12 12 C 1.53041 * 109.30951 * 54.63586 * 11 10 9 13 13 H 1.09000 * 109.45585 * 178.62865 * 12 11 10 14 14 N 1.46504 * 109.46166 * 58.65775 * 12 11 10 15 15 C 1.36935 * 119.99837 * 84.99442 * 14 12 11 16 16 H 1.08005 * 120.00299 * 0.02562 * 15 14 12 17 17 C 1.38815 * 119.99753 * 180.02562 * 15 14 12 18 18 N 1.31619 * 119.99704 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 120.00214 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47256 * 270.00489 * 19 17 15 21 21 H 1.48505 * 109.46645 * 30.00011 * 19 17 15 22 22 H 1.48498 * 109.46890 * 149.99701 * 19 17 15 23 23 C 1.53041 * 109.53743 * 298.63578 * 12 11 10 24 24 H 1.08990 * 109.49643 * 301.41153 * 23 12 11 25 25 C 1.53001 * 109.49270 * 181.31587 * 23 12 11 26 26 C 1.46932 * 120.63015 * 176.23228 * 9 7 6 27 27 C 1.39743 * 119.99713 * 0.27983 * 6 5 4 28 28 C 1.37607 * 119.99185 * 359.42199 * 27 6 5 29 29 H 1.08002 * 119.99710 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.00219 * 180.02562 * 1 2 3 31 31 H 1.08002 * 119.99710 * 180.02562 * 2 1 3 32 32 H 1.07997 * 120.00033 * 359.97438 * 4 3 2 33 33 H 1.08002 * 120.00095 * 180.02562 * 5 4 3 34 34 H 1.09002 * 109.58334 * 6.62485 * 10 9 7 35 35 H 1.08998 * 109.58715 * 246.20165 * 10 9 7 36 36 H 1.09003 * 109.49466 * 294.68630 * 11 10 9 37 37 H 1.08997 * 109.49794 * 174.58602 * 11 10 9 38 38 H 0.96999 * 119.99877 * 264.99997 * 14 12 11 39 39 H 0.97008 * 119.99853 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.47088 * 60.00495 * 25 23 12 41 41 H 1.09000 * 109.47166 * 179.97438 * 25 23 12 42 42 H 1.09002 * 109.47802 * 300.00229 * 25 23 12 43 43 H 1.08992 * 109.58999 * 353.37681 * 26 9 7 44 44 H 1.09004 * 109.58244 * 113.66174 * 26 9 7 45 45 H 1.07992 * 120.00542 * 179.70545 * 27 6 5 46 46 H 1.08001 * 119.99921 * 180.29835 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3269 0.0000 0.0000 3 6 2.0652 1.2788 0.0000 4 6 3.4623 1.2787 -0.0005 5 6 4.1505 2.4703 -0.0011 6 6 3.4518 3.6806 -0.0005 7 6 4.1902 4.9595 -0.0017 8 8 3.9199 5.8183 0.8154 9 7 5.1638 5.1748 -0.9084 10 6 5.5586 4.1169 -1.8484 11 6 5.4810 4.6704 -3.2747 12 6 6.3254 5.9432 -3.3702 13 1 6.2916 6.3256 -4.3904 14 7 7.7120 5.6373 -3.0094 15 6 8.5744 5.1512 -3.9555 16 1 8.2325 4.9936 -4.9678 17 6 9.8880 4.8609 -3.6134 18 7 10.7171 4.3941 -4.5229 19 14 10.4791 5.1327 -1.8624 20 1 11.0106 6.5128 -1.7279 21 1 9.3448 4.9453 -0.9224 22 1 11.5517 4.1560 -1.5448 23 6 5.7700 6.9989 -2.4115 24 1 4.7308 7.2089 -2.6641 25 6 6.5948 8.2820 -2.5317 26 6 5.8509 6.4718 -0.9755 27 6 2.0544 3.6805 0.0065 28 6 1.3665 2.4887 0.0008 29 1 -0.5400 0.9354 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8668 -0.9354 -0.0004 32 1 4.0022 0.3434 -0.0005 33 1 5.2305 2.4702 -0.0019 34 1 4.8819 3.2682 -1.7485 35 1 6.5793 3.8001 -1.6343 36 1 4.4444 4.9023 -3.5191 37 1 5.8628 3.9271 -3.9746 38 1 8.0191 5.7791 -2.1003 39 1 11.6352 4.1916 -4.2839 40 1 6.5393 8.6551 -3.5544 41 1 6.1987 9.0338 -1.8491 42 1 7.6337 8.0714 -2.2777 43 1 5.3672 7.1770 -0.2997 44 1 6.8949 6.3475 -0.6878 45 1 1.5143 4.6157 0.0117 46 1 0.2865 2.4886 0.0013 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036201400.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:22 Heat of formation + Delta-G solvation = 28.043046 kcal Electronic energy + Delta-G solvation = -26490.120562 eV Core-core repulsion = 22959.447020 eV Total energy + Delta-G solvation = -3530.673542 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.60230 -39.03376 -37.70415 -34.72986 -34.20724 -32.88462 -31.54148 -31.28924 -29.93973 -29.73622 -26.48675 -25.50250 -23.90697 -23.12323 -22.80437 -21.69327 -20.47696 -19.82622 -18.50736 -17.90395 -17.29586 -16.42416 -16.22586 -15.50927 -14.87087 -14.86424 -14.73404 -14.39179 -14.11703 -13.71103 -13.64033 -13.59287 -13.40994 -13.12886 -12.87655 -12.62143 -12.40582 -12.30271 -11.77998 -11.64927 -11.56206 -11.43288 -11.13894 -11.02425 -10.93643 -10.69576 -10.60666 -10.50856 -10.24323 -9.88275 -9.74554 -9.58247 -9.17367 -8.96803 -8.50540 -8.33826 -7.31158 -5.81675 -3.16944 0.46211 1.18958 2.08373 2.79104 3.12834 3.31347 3.34797 3.41479 3.68745 4.38347 4.51165 4.53648 4.55513 4.70860 4.93409 5.03614 5.11650 5.12936 5.19239 5.22325 5.33934 5.42140 5.50739 5.57058 5.60906 5.64286 5.73337 5.78472 5.87007 5.89433 5.94632 6.02403 6.05240 6.19156 6.20203 6.25226 6.29047 6.35683 6.45413 6.47713 6.54867 6.64208 6.67270 6.72951 6.86394 7.54101 7.94790 8.21382 8.37451 9.15598 9.88241 10.08197 11.36733 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.016051 B = 0.003764 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.038377 B = 7437.289754 C = 8225.381942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.119 4.119 3 C -0.046 4.046 4 C -0.112 4.112 5 C -0.086 4.086 6 C -0.118 4.118 7 C 0.556 3.444 8 O -0.547 6.547 9 N -0.595 5.595 10 C 0.102 3.898 11 C -0.149 4.149 12 C 0.184 3.816 13 H 0.061 0.939 14 N -0.744 5.744 15 C -0.240 4.240 16 H 0.091 0.909 17 C 0.007 3.993 18 N -0.933 5.933 19 Si 0.878 3.122 20 H -0.284 1.284 21 H -0.279 1.279 22 H -0.291 1.291 23 C -0.111 4.111 24 H 0.072 0.928 25 C -0.138 4.138 26 C 0.118 3.882 27 C -0.069 4.069 28 C -0.120 4.120 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.120 0.880 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.052 0.948 37 H 0.080 0.920 38 H 0.360 0.640 39 H 0.259 0.741 40 H 0.058 0.942 41 H 0.046 0.954 42 H 0.064 0.936 43 H 0.087 0.913 44 H 0.068 0.932 45 H 0.130 0.870 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.054 -4.882 8.094 21.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.137 4.137 3 C -0.046 4.046 4 C -0.130 4.130 5 C -0.105 4.105 6 C -0.120 4.120 7 C 0.344 3.656 8 O -0.426 6.426 9 N -0.326 5.326 10 C -0.020 4.020 11 C -0.190 4.190 12 C 0.075 3.925 13 H 0.079 0.921 14 N -0.387 5.387 15 C -0.370 4.370 16 H 0.108 0.892 17 C -0.189 4.189 18 N -0.581 5.581 19 Si 0.709 3.291 20 H -0.210 1.210 21 H -0.205 1.205 22 H -0.218 1.218 23 C -0.131 4.131 24 H 0.090 0.910 25 C -0.196 4.196 26 C -0.005 4.005 27 C -0.088 4.088 28 C -0.138 4.138 29 H 0.120 0.880 30 H 0.123 0.877 31 H 0.138 0.862 32 H 0.149 0.851 33 H 0.151 0.849 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.194 0.806 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.083 0.917 43 H 0.106 0.894 44 H 0.086 0.914 45 H 0.148 0.852 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -19.042 -4.495 8.295 21.251 hybrid contribution 0.713 -0.020 1.131 1.337 sum -18.329 -4.515 9.426 21.099 Atomic orbital electron populations 1.24435 0.95688 1.02360 0.98883 1.21845 0.95259 0.95787 1.00787 1.19258 0.93364 0.93195 0.98776 1.21203 0.93195 0.98129 1.00461 1.21320 1.00453 0.91297 0.97393 1.19968 0.94367 0.93344 1.04372 1.18349 0.79474 0.86764 0.80968 1.90763 1.67272 1.45984 1.38539 1.48089 1.35779 1.14964 1.33802 1.22060 1.01293 0.89357 0.89254 1.22498 0.99541 1.01319 0.95649 1.20191 0.84622 0.91061 0.96661 0.92141 1.42844 1.06859 1.79240 1.09790 1.19053 0.90600 1.34973 0.92363 0.89160 1.24636 0.96235 1.01294 0.96760 1.69692 1.05415 1.50532 1.32443 0.86668 0.78394 0.77895 0.86182 1.21045 1.20520 1.21757 1.21755 0.99943 0.96473 0.94973 0.91009 1.21675 1.00761 0.95533 1.01611 1.21673 0.97022 0.84132 0.97624 1.21023 0.92346 0.98546 0.96906 1.21203 0.99988 0.91401 1.01190 0.87963 0.87667 0.86176 0.85113 0.84886 0.89891 0.90111 0.92920 0.90192 0.80611 0.93070 0.92248 0.93490 0.91684 0.89431 0.91390 0.85242 0.85245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.16 14.15 28.84 0.41 -0.76 16 2 C -0.12 -0.94 9.90 -37.62 -0.37 -1.31 16 3 C -0.05 -0.45 5.87 -104.95 -0.62 -1.07 16 4 C -0.11 -1.15 9.76 -39.26 -0.38 -1.53 16 5 C -0.09 -1.03 7.34 -39.25 -0.29 -1.32 16 6 C -0.12 -1.59 5.00 -104.91 -0.52 -2.11 16 7 C 0.56 8.95 7.22 -12.40 -0.09 8.86 16 8 O -0.55 -10.32 16.47 5.30 0.09 -10.24 16 9 N -0.60 -9.36 2.97 -173.94 -0.52 -9.88 16 10 C 0.10 1.56 5.11 -3.71 -0.02 1.54 16 11 C -0.15 -2.37 5.78 -26.61 -0.15 -2.53 16 12 C 0.18 3.26 2.53 -67.89 -0.17 3.09 16 13 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 14 N -0.74 -16.02 3.44 -53.38 -0.18 -16.20 16 15 C -0.24 -6.30 10.41 -15.06 -0.16 -6.46 16 16 H 0.09 2.56 8.06 -52.48 -0.42 2.14 16 17 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 18 N -0.93 -28.34 13.97 55.49 0.78 -27.57 16 19 Si 0.88 21.41 27.73 -169.99 -4.71 16.69 16 20 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 C -0.11 -1.71 2.67 -90.50 -0.24 -1.95 16 24 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 25 C -0.14 -2.04 9.05 37.16 0.34 -1.71 16 26 C 0.12 1.89 5.40 -3.71 -0.02 1.87 16 27 C -0.07 -0.82 9.71 -39.25 -0.38 -1.20 16 28 C -0.12 -1.20 9.38 -39.26 -0.37 -1.57 16 29 H 0.10 0.61 6.02 -52.49 -0.32 0.30 16 30 H 0.11 0.52 8.06 -52.49 -0.42 0.10 16 31 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 32 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.13 1.55 7.08 -52.49 -0.37 1.18 16 34 H 0.08 1.11 4.56 -51.93 -0.24 0.87 16 35 H 0.08 1.39 7.74 -51.93 -0.40 0.99 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 38 H 0.36 7.81 3.79 -40.82 -0.15 7.66 16 39 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 1.09 7.54 -51.93 -0.39 0.69 16 43 H 0.09 1.40 7.02 -51.93 -0.36 1.04 16 44 H 0.07 1.17 6.65 -51.93 -0.35 0.82 16 45 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 46 H 0.13 0.99 6.15 -52.49 -0.32 0.66 16 LS Contribution 364.07 15.07 5.49 5.49 Total: -1.00 -31.40 364.07 -8.93 -40.32 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -6.72 Total: 9.44 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -3.14 Total: -8.06 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: 0.07 Total: -53.65 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.24 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.71 Total: 16.69 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.40 -8.93 -40.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036201400.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.366 kcal (2) G-P(sol) polarization free energy of solvation -31.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds