Wall clock time and date at job start Tue Mar 31 2020 10:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32688 * 1 3 3 C 1.47665 * 119.99790 * 2 1 4 4 C 1.39711 * 119.99225 * 180.02562 * 3 2 1 5 5 C 1.37608 * 120.00246 * 179.97438 * 4 3 2 6 6 C 1.39743 * 119.99343 * 0.02562 * 5 4 3 7 7 C 1.47685 * 120.00063 * 180.02562 * 6 5 4 8 8 O 1.21579 * 119.99939 * 230.88991 * 7 6 5 9 9 N 1.34771 * 120.00281 * 50.88654 * 7 6 5 10 10 C 1.46921 * 120.63278 * 356.21254 * 9 7 6 11 11 C 1.53193 * 108.77939 * 126.41107 * 10 9 7 12 12 C 1.53041 * 109.30951 * 54.63586 * 11 10 9 13 13 H 1.09000 * 109.45585 * 178.62865 * 12 11 10 14 14 N 1.46504 * 109.46166 * 58.65775 * 12 11 10 15 15 C 1.36935 * 119.99837 * 84.99442 * 14 12 11 16 16 H 1.08005 * 120.00299 * 0.02562 * 15 14 12 17 17 C 1.38815 * 119.99753 * 180.02562 * 15 14 12 18 18 N 1.31619 * 119.99704 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 120.00214 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47256 * 270.00489 * 19 17 15 21 21 H 1.48505 * 109.46645 * 30.00011 * 19 17 15 22 22 H 1.48498 * 109.46890 * 149.99701 * 19 17 15 23 23 C 1.53041 * 109.53743 * 298.63578 * 12 11 10 24 24 H 1.08990 * 109.49643 * 301.41153 * 23 12 11 25 25 C 1.53001 * 109.49270 * 181.31587 * 23 12 11 26 26 C 1.46932 * 120.63015 * 176.23228 * 9 7 6 27 27 C 1.39743 * 119.99713 * 0.27983 * 6 5 4 28 28 C 1.37607 * 119.99185 * 359.42199 * 27 6 5 29 29 H 1.08002 * 119.99710 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.00219 * 180.02562 * 1 2 3 31 31 H 1.08002 * 119.99710 * 180.02562 * 2 1 3 32 32 H 1.07997 * 120.00033 * 359.97438 * 4 3 2 33 33 H 1.08002 * 120.00095 * 180.02562 * 5 4 3 34 34 H 1.09002 * 109.58334 * 6.62485 * 10 9 7 35 35 H 1.08998 * 109.58715 * 246.20165 * 10 9 7 36 36 H 1.09003 * 109.49466 * 294.68630 * 11 10 9 37 37 H 1.08997 * 109.49794 * 174.58602 * 11 10 9 38 38 H 0.96999 * 119.99877 * 264.99997 * 14 12 11 39 39 H 0.97008 * 119.99853 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.47088 * 60.00495 * 25 23 12 41 41 H 1.09000 * 109.47166 * 179.97438 * 25 23 12 42 42 H 1.09002 * 109.47802 * 300.00229 * 25 23 12 43 43 H 1.08992 * 109.58999 * 353.37681 * 26 9 7 44 44 H 1.09004 * 109.58244 * 113.66174 * 26 9 7 45 45 H 1.07992 * 120.00542 * 179.70545 * 27 6 5 46 46 H 1.08001 * 119.99921 * 180.29835 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3269 0.0000 0.0000 3 6 2.0652 1.2788 0.0000 4 6 3.4623 1.2787 -0.0005 5 6 4.1505 2.4703 -0.0011 6 6 3.4518 3.6806 -0.0005 7 6 4.1902 4.9595 -0.0017 8 8 3.9199 5.8183 0.8154 9 7 5.1638 5.1748 -0.9084 10 6 5.5586 4.1169 -1.8484 11 6 5.4810 4.6704 -3.2747 12 6 6.3254 5.9432 -3.3702 13 1 6.2916 6.3256 -4.3904 14 7 7.7120 5.6373 -3.0094 15 6 8.5744 5.1512 -3.9555 16 1 8.2325 4.9936 -4.9678 17 6 9.8880 4.8609 -3.6134 18 7 10.7171 4.3941 -4.5229 19 14 10.4791 5.1327 -1.8624 20 1 11.0106 6.5128 -1.7279 21 1 9.3448 4.9453 -0.9224 22 1 11.5517 4.1560 -1.5448 23 6 5.7700 6.9989 -2.4115 24 1 4.7308 7.2089 -2.6641 25 6 6.5948 8.2820 -2.5317 26 6 5.8509 6.4718 -0.9755 27 6 2.0544 3.6805 0.0065 28 6 1.3665 2.4887 0.0008 29 1 -0.5400 0.9354 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8668 -0.9354 -0.0004 32 1 4.0022 0.3434 -0.0005 33 1 5.2305 2.4702 -0.0019 34 1 4.8819 3.2682 -1.7485 35 1 6.5793 3.8001 -1.6343 36 1 4.4444 4.9023 -3.5191 37 1 5.8628 3.9271 -3.9746 38 1 8.0191 5.7791 -2.1003 39 1 11.6352 4.1916 -4.2839 40 1 6.5393 8.6551 -3.5544 41 1 6.1987 9.0338 -1.8491 42 1 7.6337 8.0714 -2.2777 43 1 5.3672 7.1770 -0.2997 44 1 6.8949 6.3475 -0.6878 45 1 1.5143 4.6157 0.0117 46 1 0.2865 2.4886 0.0013 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036201400.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:21 Heat of formation + Delta-G solvation = 10.954023 kcal Electronic energy + Delta-G solvation = -26490.861598 eV Core-core repulsion = 22959.447020 eV Total energy + Delta-G solvation = -3531.414577 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.76512 -40.04417 -39.00366 -36.06233 -35.24763 -34.37791 -33.17580 -32.11221 -31.49686 -30.71107 -27.69324 -26.85116 -25.21749 -24.56067 -23.67305 -23.03893 -21.46008 -20.66715 -19.97987 -19.74219 -18.44605 -17.49870 -17.15336 -16.78494 -16.41924 -16.10345 -15.70470 -15.67381 -15.45813 -15.13027 -14.98523 -14.51959 -14.49482 -14.28177 -14.08337 -13.93334 -13.65490 -13.34691 -13.17264 -13.03516 -12.94080 -12.70647 -12.52373 -12.29800 -12.06510 -12.01422 -11.95043 -11.81560 -11.69101 -11.35658 -11.22775 -11.03901 -10.84382 -9.99004 -9.74620 -9.26814 -9.15711 -7.98590 -5.29532 -0.34180 0.37032 1.30588 1.35961 1.37741 1.44363 1.70761 1.97027 2.48558 2.86264 3.32829 3.37145 3.59696 3.75678 3.77548 3.84707 3.92960 3.96406 3.98975 4.23014 4.28306 4.32912 4.34433 4.44215 4.45701 4.54758 4.65710 4.75137 4.76970 4.91731 4.94223 4.98399 5.01017 5.09470 5.13602 5.20885 5.22237 5.23829 5.32668 5.36790 5.41100 5.56669 5.66421 5.82699 5.83791 5.91063 6.25144 6.30558 6.97913 7.11843 7.88395 8.06961 9.23280 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.016051 B = 0.003764 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.038377 B = 7437.289754 C = 8225.381942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.142 4.142 3 C -0.040 4.040 4 C -0.116 4.116 5 C -0.093 4.093 6 C -0.144 4.144 7 C 0.558 3.442 8 O -0.580 6.580 9 N -0.595 5.595 10 C 0.110 3.890 11 C -0.142 4.142 12 C 0.178 3.822 13 H 0.052 0.948 14 N -0.742 5.742 15 C -0.211 4.211 16 H 0.062 0.938 17 C -0.059 4.059 18 N -0.984 5.984 19 Si 0.939 3.061 20 H -0.283 1.283 21 H -0.258 1.258 22 H -0.300 1.300 23 C -0.100 4.100 24 H 0.090 0.910 25 C -0.136 4.136 26 C 0.118 3.882 27 C -0.075 4.075 28 C -0.122 4.122 29 H 0.108 0.892 30 H 0.124 0.876 31 H 0.134 0.866 32 H 0.152 0.848 33 H 0.130 0.870 34 H 0.105 0.895 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.362 0.638 39 H 0.255 0.745 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.043 0.957 43 H 0.090 0.910 44 H 0.055 0.945 45 H 0.131 0.869 46 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.865 -5.713 9.363 24.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.160 4.160 3 C -0.041 4.041 4 C -0.134 4.134 5 C -0.112 4.112 6 C -0.147 4.147 7 C 0.348 3.652 8 O -0.462 6.462 9 N -0.325 5.325 10 C -0.012 4.012 11 C -0.183 4.183 12 C 0.069 3.931 13 H 0.070 0.930 14 N -0.386 5.386 15 C -0.343 4.343 16 H 0.080 0.920 17 C -0.250 4.250 18 N -0.635 5.635 19 Si 0.768 3.232 20 H -0.209 1.209 21 H -0.183 1.183 22 H -0.227 1.227 23 C -0.120 4.120 24 H 0.109 0.891 25 C -0.193 4.193 26 C -0.005 4.005 27 C -0.094 4.094 28 C -0.139 4.139 29 H 0.126 0.874 30 H 0.142 0.858 31 H 0.151 0.849 32 H 0.169 0.831 33 H 0.148 0.852 34 H 0.123 0.877 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.196 0.804 39 H 0.064 0.936 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.062 0.938 43 H 0.108 0.892 44 H 0.073 0.927 45 H 0.149 0.851 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -21.912 -5.315 9.575 24.496 hybrid contribution 1.379 0.179 0.687 1.551 sum -20.533 -5.136 10.262 23.522 Atomic orbital electron populations 1.24738 0.95353 1.03646 0.95808 1.21945 0.95840 0.95314 1.02897 1.19591 0.93435 0.94180 0.96852 1.21457 0.93697 0.98271 0.99944 1.21344 1.00415 0.91504 0.97900 1.19852 0.94978 0.92407 1.07430 1.18762 0.79081 0.87323 0.80064 1.90733 1.68242 1.47460 1.39720 1.48114 1.35774 1.14822 1.33827 1.21977 1.00706 0.89946 0.88549 1.22375 1.00269 0.99758 0.95866 1.20412 0.82958 0.92744 0.96942 0.92976 1.42801 1.07972 1.78870 1.08922 1.18996 0.90900 1.32423 0.91940 0.91974 1.25289 0.96706 1.02545 1.00491 1.69855 1.05663 1.53313 1.34673 0.85653 0.78072 0.77328 0.82109 1.20907 1.18342 1.22666 1.21667 1.00820 0.95723 0.93770 0.89129 1.21654 0.99427 0.95847 1.02411 1.21634 0.96342 0.84580 0.97913 1.21135 0.91783 0.99488 0.96993 1.21474 1.01244 0.90729 1.00456 0.87373 0.85764 0.84861 0.83069 0.85189 0.87749 0.92169 0.90617 0.91557 0.80414 0.93609 0.91955 0.91188 0.93807 0.89216 0.92710 0.85133 0.82793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 14.15 66.65 0.94 -0.52 16 2 C -0.14 -1.76 9.90 23.59 0.23 -1.52 16 3 C -0.04 -0.69 5.87 -20.07 -0.12 -0.81 16 4 C -0.12 -2.13 9.76 22.48 0.22 -1.91 16 5 C -0.09 -2.11 7.34 22.48 0.17 -1.94 16 6 C -0.14 -3.73 5.00 -20.05 -0.10 -3.83 16 7 C 0.56 17.55 7.22 86.74 0.63 18.18 16 8 O -0.58 -21.72 16.47 -3.97 -0.07 -21.78 16 9 N -0.60 -18.14 2.97 -822.50 -2.44 -20.59 16 10 C 0.11 3.26 5.11 86.36 0.44 3.70 16 11 C -0.14 -4.37 5.78 30.67 0.18 -4.19 16 12 C 0.18 6.15 2.53 45.02 0.11 6.27 16 13 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 14 N -0.74 -31.84 3.44 -322.80 -1.11 -32.95 16 15 C -0.21 -11.28 10.41 84.03 0.87 -10.41 16 16 H 0.06 3.64 8.06 -2.91 -0.02 3.61 16 17 C -0.06 -3.36 5.50 84.86 0.47 -2.89 16 18 N -0.98 -61.56 13.97 21.65 0.30 -61.26 16 19 Si 0.94 44.86 27.73 68.60 1.90 46.76 16 20 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 21 H -0.26 -11.28 6.52 99.48 0.65 -10.63 16 22 H -0.30 -14.66 7.11 99.48 0.71 -13.96 16 23 C -0.10 -2.92 2.67 -10.72 -0.03 -2.94 16 24 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 25 C -0.14 -3.81 9.05 71.98 0.65 -3.16 16 26 C 0.12 3.65 5.40 86.36 0.47 4.12 16 27 C -0.08 -1.67 9.71 22.48 0.22 -1.45 16 28 C -0.12 -2.11 9.38 22.48 0.21 -1.90 16 29 H 0.11 0.86 6.02 -2.91 -0.02 0.84 16 30 H 0.12 0.70 8.06 -2.91 -0.02 0.67 16 31 H 0.13 1.27 8.06 -2.91 -0.02 1.24 16 32 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 33 H 0.13 2.93 7.08 -2.91 -0.02 2.91 16 34 H 0.10 2.66 4.56 -2.39 -0.01 2.65 16 35 H 0.06 2.04 7.74 -2.39 -0.02 2.03 16 36 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.07 2.23 8.14 -2.39 -0.02 2.22 16 38 H 0.36 15.47 3.79 -92.71 -0.35 15.12 16 39 H 0.25 15.37 8.31 -92.70 -0.77 14.60 16 40 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.04 1.41 7.54 -2.39 -0.02 1.40 16 43 H 0.09 2.77 7.02 -2.39 -0.02 2.75 16 44 H 0.05 1.84 6.65 -2.38 -0.02 1.82 16 45 H 0.13 2.77 8.06 -2.91 -0.02 2.74 16 46 H 0.15 1.82 6.15 -2.91 -0.02 1.80 16 Total: -1.00 -69.00 364.07 4.72 -64.28 By element: Atomic # 1 Polarization: 30.19 SS G_CDS: 0.57 Total: 30.76 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: 5.56 Total: -5.22 kcal Atomic # 7 Polarization: -111.54 SS G_CDS: -3.25 Total: -114.80 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.07 Total: -21.78 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.90 Total: 46.76 kcal Total: -69.00 4.72 -64.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036201400.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.236 kcal (2) G-P(sol) polarization free energy of solvation -68.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds