Wall clock time and date at job start Tue Mar 31 2020 10:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.51461 * 2 1 4 4 C 1.53279 * 109.51093 * 120.09820 * 2 1 3 5 5 N 1.47175 * 108.56135 * 173.00173 * 4 2 1 6 6 C 1.34769 * 121.08284 * 128.76655 * 5 4 2 7 7 O 1.21286 * 119.99739 * 353.32651 * 6 5 4 8 8 C 1.50696 * 120.00183 * 173.32228 * 6 5 4 9 9 C 1.53001 * 109.47361 * 175.91733 * 8 6 5 10 10 C 1.53001 * 109.47346 * 295.91651 * 8 6 5 11 11 F 1.39898 * 109.47052 * 55.91891 * 8 6 5 12 12 C 1.47335 * 117.83676 * 308.74829 * 5 4 2 13 13 C 1.52357 * 108.42801 * 49.15582 * 12 5 4 14 14 C 1.54373 * 110.38926 * 73.49011 * 13 12 5 15 15 C 1.54472 * 102.95677 * 152.19483 * 14 13 12 16 16 N 1.47087 * 107.28927 * 338.85847 * 15 14 13 17 17 C 1.36927 * 125.62980 * 178.89182 * 16 15 14 18 18 H 1.08007 * 119.99833 * 179.69430 * 17 16 15 19 19 C 1.38811 * 120.00258 * 359.69025 * 17 16 15 20 20 N 1.31619 * 119.99954 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00172 * 180.27534 * 19 17 16 22 22 H 1.48506 * 109.47094 * 269.72869 * 21 19 17 23 23 H 1.48503 * 109.47148 * 29.72537 * 21 19 17 24 24 H 1.48498 * 109.47118 * 149.72731 * 21 19 17 25 25 C 1.47578 * 108.73822 * 358.62893 * 16 15 14 26 26 O 1.41882 * 111.46966 * 309.99633 * 13 12 5 27 27 H 1.08996 * 109.47154 * 299.90389 * 1 2 3 28 28 H 1.08996 * 109.46861 * 59.90373 * 1 2 3 29 29 H 1.08999 * 109.46936 * 179.90059 * 1 2 3 30 30 H 1.09006 * 109.62685 * 53.28170 * 4 2 1 31 31 H 1.09001 * 109.62783 * 292.72455 * 4 2 1 32 32 H 1.09003 * 109.46960 * 59.99917 * 9 8 6 33 33 H 1.09000 * 109.47452 * 179.97438 * 9 8 6 34 34 H 1.09002 * 109.47366 * 300.00479 * 9 8 6 35 35 H 1.08997 * 109.46750 * 67.13363 * 10 8 6 36 36 H 1.09001 * 109.47287 * 187.13065 * 10 8 6 37 37 H 1.08996 * 109.46994 * 307.13518 * 10 8 6 38 38 H 1.09002 * 109.67249 * 289.41907 * 12 5 4 39 39 H 1.09000 * 109.69708 * 168.90742 * 12 5 4 40 40 H 1.09005 * 110.73418 * 270.74798 * 14 13 12 41 41 H 1.09005 * 110.73467 * 34.05411 * 14 13 12 42 42 H 1.09005 * 109.99548 * 219.37910 * 15 14 13 43 43 H 1.08998 * 109.76799 * 98.21902 * 15 14 13 44 44 H 0.96998 * 119.99813 * 179.97438 * 20 19 17 45 45 H 1.08993 * 110.37468 * 142.38803 * 25 16 15 46 46 H 1.09002 * 110.37221 * 264.73550 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0419 -0.7245 1.2500 5 7 3.5037 -0.8611 1.1466 6 6 4.3117 -0.4724 2.1528 7 8 3.8494 0.1087 3.1117 8 6 5.7895 -0.7597 2.0863 9 6 6.4865 -0.1293 3.2937 10 6 6.0160 -2.2728 2.0993 11 9 6.3171 -0.2193 0.9087 12 6 4.0550 -1.4370 -0.0924 13 6 3.4227 -0.7209 -1.2793 14 6 4.0039 0.7023 -1.4205 15 6 3.8643 0.9849 -2.9327 16 7 3.7519 -0.3150 -3.6118 17 6 3.5907 -0.4999 -4.9590 18 1 3.5232 -1.4994 -5.3626 19 6 3.5141 0.5973 -5.8059 20 7 3.5969 1.8153 -5.3141 21 14 3.2865 0.3452 -7.6427 22 1 4.6159 0.2525 -8.2981 23 1 2.5291 -0.9100 -7.8800 24 1 2.5336 1.4925 -8.2103 25 6 3.8480 -1.3871 -2.6023 26 8 2.0091 -0.6771 -1.1664 27 1 -0.3633 0.5123 0.8908 28 1 -0.3633 0.5153 -0.8891 29 1 -0.3633 -1.0277 -0.0018 30 1 1.5856 -1.7125 1.3132 31 1 1.7904 -0.1447 2.1381 32 1 6.0753 -0.5504 4.2112 33 1 7.5553 -0.3376 3.2459 34 1 6.3251 0.9486 3.2845 35 1 5.6299 -2.7059 1.1766 36 1 7.0832 -2.4798 2.1791 37 1 5.4963 -2.7106 2.9515 38 1 3.8210 -2.5007 -0.1384 39 1 5.1358 -1.2978 -0.1130 40 1 3.4226 1.4161 -0.8368 41 1 5.0524 0.7222 -1.1233 42 1 4.7436 1.5175 -3.2951 43 1 2.9679 1.5774 -3.1158 44 1 3.5437 2.5819 -5.9060 45 1 3.1706 -2.2041 -2.8507 46 1 4.8731 -1.7510 -2.5316 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071127548.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:46 Heat of formation + Delta-G solvation = -87.167079 kcal Electronic energy + Delta-G solvation = -29022.184411 eV Core-core repulsion = 25055.745759 eV Total energy + Delta-G solvation = -3966.438652 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.19953 -40.59884 -38.95495 -36.27714 -34.87049 -33.88730 -32.99332 -31.34389 -29.30642 -28.49978 -27.89220 -26.85325 -25.68399 -23.86304 -23.04926 -21.64607 -20.20894 -19.65208 -19.08898 -17.69034 -17.00835 -16.97711 -16.17727 -15.91637 -15.38280 -15.15414 -14.99710 -14.63166 -14.27210 -14.02195 -13.53890 -13.42495 -13.38427 -12.95635 -12.78652 -12.62583 -12.52690 -12.38094 -12.32612 -12.17078 -11.98458 -11.93958 -11.78433 -11.55780 -11.21467 -10.94834 -10.86796 -10.85074 -10.33725 -10.19695 -10.07790 -10.03623 -9.78375 -9.63736 -9.51510 -8.54962 -8.43426 -6.79417 -5.66364 -2.99738 2.24902 2.65600 3.43319 3.48027 3.50312 3.88448 3.90654 4.16917 4.33585 4.50083 4.52185 4.73903 4.94745 5.06318 5.08607 5.17665 5.18844 5.25709 5.37586 5.39508 5.48313 5.51912 5.58875 5.62522 5.66084 5.69504 5.74154 5.79399 5.84919 5.89616 6.05338 6.14697 6.19580 6.31452 6.48389 6.50620 6.54459 6.65017 7.14813 7.58823 7.66952 7.69615 7.82835 7.87550 8.29212 9.25695 9.85788 10.51385 11.45472 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.018561 B = 0.004371 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.153720 B = 6404.332989 C = 7206.914786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.069 3.931 3 H 0.065 0.935 4 C 0.082 3.918 5 N -0.598 5.598 6 C 0.505 3.495 7 O -0.530 6.530 8 C 0.102 3.898 9 C -0.156 4.156 10 C -0.178 4.178 11 F -0.185 7.185 12 C 0.073 3.927 13 C 0.094 3.906 14 C -0.167 4.167 15 C 0.186 3.814 16 N -0.598 5.598 17 C -0.225 4.225 18 H 0.078 0.922 19 C -0.008 4.008 20 N -0.922 5.922 21 Si 0.912 3.088 22 H -0.289 1.289 23 H -0.281 1.281 24 H -0.291 1.291 25 C 0.153 3.847 26 O -0.344 6.344 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.113 0.887 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.042 0.958 43 H 0.047 0.953 44 H 0.251 0.749 45 H 0.051 0.949 46 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.935 -7.258 17.433 18.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.011 3.989 3 H 0.083 0.917 4 C -0.040 4.040 5 N -0.331 5.331 6 C 0.291 3.709 7 O -0.407 6.407 8 C 0.081 3.919 9 C -0.214 4.214 10 C -0.235 4.235 11 F -0.166 7.166 12 C -0.050 4.050 13 C 0.053 3.947 14 C -0.205 4.205 15 C 0.061 3.939 16 N -0.324 5.324 17 C -0.353 4.353 18 H 0.096 0.904 19 C -0.204 4.204 20 N -0.570 5.570 21 Si 0.743 3.257 22 H -0.217 1.217 23 H -0.207 1.207 24 H -0.217 1.217 25 C 0.026 3.974 26 O -0.262 6.262 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.116 0.884 32 H 0.100 0.900 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.130 0.870 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.069 0.931 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 1.539 -6.876 17.574 18.934 hybrid contribution 0.057 0.122 -0.935 0.944 sum 1.595 -6.754 16.639 18.029 Atomic orbital electron populations 1.21674 0.92380 1.02922 1.02760 1.22445 0.95401 0.96139 0.84934 0.91671 1.22445 0.79283 1.01976 1.00343 1.48165 1.06976 1.61447 1.16491 1.20798 0.88618 0.78739 0.82759 1.90695 1.76363 1.40374 1.33265 1.21180 0.90353 0.96151 0.84216 1.22159 1.00511 1.02650 0.96050 1.22516 1.04489 0.91807 1.04695 1.92878 1.87395 1.87527 1.48797 1.22784 1.01238 0.97893 0.83084 1.22355 0.81238 0.96535 0.94582 1.23389 1.00143 0.95643 1.01363 1.21101 1.00779 0.87805 0.84182 1.44405 1.85821 1.00035 1.02184 1.19039 1.42819 0.92890 0.80595 0.90383 1.24786 1.02243 0.95260 0.98110 1.69970 1.56840 0.96938 1.33210 0.86117 0.77593 0.76947 0.85087 1.21660 1.20694 1.21745 1.21325 0.97396 0.92636 0.86005 1.87915 1.19966 1.76558 1.41807 0.91256 0.91030 0.91793 0.90540 0.88403 0.89956 0.90571 0.90639 0.90166 0.89850 0.90175 0.90642 0.86959 0.92067 0.91392 0.93938 0.93523 0.93821 0.93095 0.94657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.57 37.16 0.36 -1.37 16 2 C 0.07 1.04 3.20 -26.59 -0.08 0.95 16 3 H 0.07 1.07 6.23 -51.93 -0.32 0.75 16 4 C 0.08 1.08 5.92 -3.53 -0.02 1.06 16 5 N -0.60 -8.27 2.95 -172.69 -0.51 -8.78 16 6 C 0.51 7.04 6.78 -10.99 -0.07 6.97 16 7 O -0.53 -8.55 15.46 5.55 0.09 -8.47 16 8 C 0.10 1.17 1.20 -91.77 -0.11 1.06 16 9 C -0.16 -1.51 8.22 37.16 0.31 -1.21 16 10 C -0.18 -1.50 8.62 37.16 0.32 -1.17 16 11 F -0.19 -2.50 13.98 2.25 0.03 -2.47 16 12 C 0.07 1.02 3.64 -3.91 -0.01 1.01 16 13 C 0.09 1.69 0.84 -89.65 -0.08 1.62 16 14 C -0.17 -3.31 5.87 -25.24 -0.15 -3.46 16 15 C 0.19 4.67 5.39 -2.95 -0.02 4.65 16 16 N -0.60 -15.46 3.40 -170.30 -0.58 -16.04 16 17 C -0.23 -6.33 10.28 -15.06 -0.15 -6.49 16 18 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 19 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 20 N -0.92 -27.54 10.31 55.49 0.57 -26.97 16 21 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 C 0.15 3.15 6.42 -2.87 -0.02 3.14 16 26 O -0.34 -6.37 9.93 -35.22 -0.35 -6.72 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.10 1.27 7.06 -51.93 -0.37 0.90 16 32 H 0.08 0.74 8.06 -51.93 -0.42 0.32 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 35 H 0.08 0.69 5.90 -51.93 -0.31 0.38 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.60 8.13 -51.93 -0.42 0.17 16 38 H 0.08 0.93 8.05 -51.93 -0.42 0.51 16 39 H 0.11 1.53 3.95 -51.93 -0.21 1.32 16 40 H 0.06 1.19 6.08 -51.93 -0.32 0.87 16 41 H 0.07 1.29 7.42 -51.93 -0.39 0.90 16 42 H 0.04 1.17 7.52 -51.93 -0.39 0.78 16 43 H 0.05 1.32 7.37 -51.93 -0.38 0.93 16 44 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 45 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.04 0.68 7.99 -51.93 -0.42 0.27 16 LS Contribution 353.38 15.07 5.33 5.33 Total: -1.00 -32.88 353.38 -7.56 -40.43 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -7.28 Total: -0.06 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: 0.17 Total: 6.44 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: -0.52 Total: -51.79 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.26 Total: -15.18 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.03 Total: -2.47 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.88 -7.56 -40.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071127548.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.733 kcal (2) G-P(sol) polarization free energy of solvation -32.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds