Wall clock time and date at job start Tue Mar 31 2020 10:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.51461 * 2 1 4 4 C 1.53279 * 109.51093 * 120.09820 * 2 1 3 5 5 N 1.47175 * 108.56135 * 173.00173 * 4 2 1 6 6 C 1.34769 * 121.08284 * 128.76655 * 5 4 2 7 7 O 1.21286 * 119.99739 * 353.32651 * 6 5 4 8 8 C 1.50696 * 120.00183 * 173.32228 * 6 5 4 9 9 C 1.53001 * 109.47361 * 175.91733 * 8 6 5 10 10 C 1.53001 * 109.47346 * 295.91651 * 8 6 5 11 11 F 1.39898 * 109.47052 * 55.91891 * 8 6 5 12 12 C 1.47335 * 117.83676 * 308.74829 * 5 4 2 13 13 C 1.52357 * 108.42801 * 49.15582 * 12 5 4 14 14 C 1.54373 * 110.38926 * 73.49011 * 13 12 5 15 15 C 1.54472 * 102.95677 * 152.19483 * 14 13 12 16 16 N 1.47087 * 107.28927 * 338.85847 * 15 14 13 17 17 C 1.36927 * 125.62980 * 178.89182 * 16 15 14 18 18 H 1.08007 * 119.99833 * 179.69430 * 17 16 15 19 19 C 1.38811 * 120.00258 * 359.69025 * 17 16 15 20 20 N 1.31619 * 119.99954 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00172 * 180.27534 * 19 17 16 22 22 H 1.48506 * 109.47094 * 269.72869 * 21 19 17 23 23 H 1.48503 * 109.47148 * 29.72537 * 21 19 17 24 24 H 1.48498 * 109.47118 * 149.72731 * 21 19 17 25 25 C 1.47578 * 108.73822 * 358.62893 * 16 15 14 26 26 O 1.41882 * 111.46966 * 309.99633 * 13 12 5 27 27 H 1.08996 * 109.47154 * 299.90389 * 1 2 3 28 28 H 1.08996 * 109.46861 * 59.90373 * 1 2 3 29 29 H 1.08999 * 109.46936 * 179.90059 * 1 2 3 30 30 H 1.09006 * 109.62685 * 53.28170 * 4 2 1 31 31 H 1.09001 * 109.62783 * 292.72455 * 4 2 1 32 32 H 1.09003 * 109.46960 * 59.99917 * 9 8 6 33 33 H 1.09000 * 109.47452 * 179.97438 * 9 8 6 34 34 H 1.09002 * 109.47366 * 300.00479 * 9 8 6 35 35 H 1.08997 * 109.46750 * 67.13363 * 10 8 6 36 36 H 1.09001 * 109.47287 * 187.13065 * 10 8 6 37 37 H 1.08996 * 109.46994 * 307.13518 * 10 8 6 38 38 H 1.09002 * 109.67249 * 289.41907 * 12 5 4 39 39 H 1.09000 * 109.69708 * 168.90742 * 12 5 4 40 40 H 1.09005 * 110.73418 * 270.74798 * 14 13 12 41 41 H 1.09005 * 110.73467 * 34.05411 * 14 13 12 42 42 H 1.09005 * 109.99548 * 219.37910 * 15 14 13 43 43 H 1.08998 * 109.76799 * 98.21902 * 15 14 13 44 44 H 0.96998 * 119.99813 * 179.97438 * 20 19 17 45 45 H 1.08993 * 110.37468 * 142.38803 * 25 16 15 46 46 H 1.09002 * 110.37221 * 264.73550 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0419 -0.7245 1.2500 5 7 3.5037 -0.8611 1.1466 6 6 4.3117 -0.4724 2.1528 7 8 3.8494 0.1087 3.1117 8 6 5.7895 -0.7597 2.0863 9 6 6.4865 -0.1293 3.2937 10 6 6.0160 -2.2728 2.0993 11 9 6.3171 -0.2193 0.9087 12 6 4.0550 -1.4370 -0.0924 13 6 3.4227 -0.7209 -1.2793 14 6 4.0039 0.7023 -1.4205 15 6 3.8643 0.9849 -2.9327 16 7 3.7519 -0.3150 -3.6118 17 6 3.5907 -0.4999 -4.9590 18 1 3.5232 -1.4994 -5.3626 19 6 3.5141 0.5973 -5.8059 20 7 3.5969 1.8153 -5.3141 21 14 3.2865 0.3452 -7.6427 22 1 4.6159 0.2525 -8.2981 23 1 2.5291 -0.9100 -7.8800 24 1 2.5336 1.4925 -8.2103 25 6 3.8480 -1.3871 -2.6023 26 8 2.0091 -0.6771 -1.1664 27 1 -0.3633 0.5123 0.8908 28 1 -0.3633 0.5153 -0.8891 29 1 -0.3633 -1.0277 -0.0018 30 1 1.5856 -1.7125 1.3132 31 1 1.7904 -0.1447 2.1381 32 1 6.0753 -0.5504 4.2112 33 1 7.5553 -0.3376 3.2459 34 1 6.3251 0.9486 3.2845 35 1 5.6299 -2.7059 1.1766 36 1 7.0832 -2.4798 2.1791 37 1 5.4963 -2.7106 2.9515 38 1 3.8210 -2.5007 -0.1384 39 1 5.1358 -1.2978 -0.1130 40 1 3.4226 1.4161 -0.8368 41 1 5.0524 0.7222 -1.1233 42 1 4.7436 1.5175 -3.2951 43 1 2.9679 1.5774 -3.1158 44 1 3.5437 2.5819 -5.9060 45 1 3.1706 -2.2041 -2.8507 46 1 4.8731 -1.7510 -2.5316 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071127548.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:46 Heat of formation + Delta-G solvation = -108.672497 kcal Electronic energy + Delta-G solvation = -29023.116956 eV Core-core repulsion = 25055.745759 eV Total energy + Delta-G solvation = -3967.371197 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.15462 -41.83728 -40.23187 -37.91644 -36.05164 -34.90439 -34.53340 -32.96242 -31.09771 -30.02602 -28.68032 -27.81272 -27.35346 -25.58428 -24.07798 -22.98891 -22.01811 -20.83900 -20.36197 -18.96098 -18.73777 -18.17566 -17.24333 -17.10406 -16.76443 -16.46128 -16.27068 -16.04527 -15.76699 -15.42946 -15.12774 -14.94125 -14.30263 -14.12292 -14.02114 -13.86686 -13.61349 -13.41370 -13.27148 -13.24441 -13.17628 -13.04033 -12.99731 -12.86995 -12.81443 -12.74308 -12.30106 -12.06182 -12.02785 -11.96889 -11.85616 -11.72173 -11.45203 -10.97002 -10.79842 -10.69362 -9.64140 -8.89842 -7.83209 -5.18866 1.18772 1.46581 1.49235 1.57745 1.62282 2.50206 2.58587 2.93072 3.35403 3.40912 3.44258 3.51303 3.61607 3.69955 3.82462 3.83008 3.95553 4.00388 4.17948 4.29525 4.39675 4.48703 4.52180 4.58679 4.64754 4.66900 4.68707 4.71853 4.79241 4.84363 4.92189 4.94087 5.03688 5.04222 5.07339 5.11356 5.17029 5.27684 5.44896 5.58695 5.71240 6.06593 6.18284 6.35176 6.76149 7.09678 7.77095 8.41877 9.27901 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.018561 B = 0.004371 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.153720 B = 6404.332989 C = 7206.914786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.065 3.935 3 H 0.042 0.958 4 C 0.087 3.913 5 N -0.601 5.601 6 C 0.501 3.499 7 O -0.556 6.556 8 C 0.097 3.903 9 C -0.154 4.154 10 C -0.174 4.174 11 F -0.199 7.199 12 C 0.084 3.916 13 C 0.104 3.896 14 C -0.151 4.151 15 C 0.199 3.801 16 N -0.620 5.620 17 C -0.237 4.237 18 H 0.088 0.912 19 C -0.069 4.069 20 N -0.956 5.956 21 Si 0.980 3.020 22 H -0.284 1.284 23 H -0.266 1.266 24 H -0.298 1.298 25 C 0.147 3.853 26 O -0.369 6.369 27 H 0.096 0.904 28 H 0.051 0.949 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.056 0.944 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.121 0.879 40 H 0.060 0.940 41 H 0.078 0.922 42 H 0.006 0.994 43 H 0.002 0.998 44 H 0.245 0.755 45 H 0.055 0.945 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.325 -9.840 18.843 21.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.007 3.993 3 H 0.060 0.940 4 C -0.035 4.035 5 N -0.333 5.333 6 C 0.288 3.712 7 O -0.434 6.434 8 C 0.076 3.924 9 C -0.212 4.212 10 C -0.231 4.231 11 F -0.180 7.180 12 C -0.038 4.038 13 C 0.062 3.938 14 C -0.190 4.190 15 C 0.074 3.926 16 N -0.346 5.346 17 C -0.366 4.366 18 H 0.106 0.894 19 C -0.262 4.262 20 N -0.605 5.605 21 Si 0.808 3.192 22 H -0.211 1.211 23 H -0.191 1.191 24 H -0.225 1.225 25 C 0.022 3.978 26 O -0.288 6.288 27 H 0.114 0.886 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.117 0.883 31 H 0.119 0.881 32 H 0.108 0.892 33 H 0.118 0.882 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.122 0.878 37 H 0.110 0.890 38 H 0.122 0.878 39 H 0.139 0.861 40 H 0.079 0.921 41 H 0.097 0.903 42 H 0.024 0.976 43 H 0.020 0.980 44 H 0.054 0.946 45 H 0.073 0.927 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.933 -9.502 19.007 21.338 hybrid contribution -0.098 0.950 -1.342 1.647 sum 1.834 -8.552 17.665 19.712 Atomic orbital electron populations 1.21683 0.90434 1.03898 1.03149 1.22631 0.96958 0.94917 0.84801 0.93957 1.22432 0.79165 1.02895 0.99004 1.48233 1.07300 1.61373 1.16351 1.21326 0.89739 0.77886 0.82253 1.90682 1.77116 1.41344 1.34278 1.21434 0.88480 0.98378 0.84121 1.22187 1.01903 1.01413 0.95685 1.22546 1.06162 0.89058 1.05300 1.92850 1.87380 1.87987 1.49782 1.22672 1.01195 0.98702 0.81258 1.22202 0.81548 0.94777 0.95244 1.23189 1.01038 0.97573 0.97178 1.20730 0.96960 0.87322 0.87629 1.44684 1.85731 1.01581 1.02618 1.19501 1.41703 0.93316 0.82065 0.89414 1.25677 1.02758 0.95046 1.02679 1.70215 1.58349 0.97603 1.34358 0.85048 0.77549 0.76962 0.79598 1.21076 1.19118 1.22476 1.21576 0.98757 0.91524 0.85967 1.87879 1.20096 1.76956 1.43852 0.88564 0.92953 0.90463 0.88299 0.88129 0.89155 0.88248 0.92443 0.90055 0.87785 0.88954 0.87767 0.86149 0.92141 0.90310 0.97590 0.97981 0.94610 0.92697 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 9.57 71.98 0.69 -2.46 16 2 C 0.07 1.89 3.20 30.69 0.10 1.99 16 3 H 0.04 1.41 6.23 -2.39 -0.01 1.40 16 4 C 0.09 2.10 5.92 86.34 0.51 2.61 16 5 N -0.60 -15.19 2.95 -818.65 -2.41 -17.60 16 6 C 0.50 12.94 6.78 87.66 0.59 13.54 16 7 O -0.56 -17.12 15.46 -3.05 -0.05 -17.16 16 8 C 0.10 1.97 1.20 -11.54 -0.01 1.95 16 9 C -0.15 -2.65 8.22 71.98 0.59 -2.06 16 10 C -0.17 -2.27 8.62 71.98 0.62 -1.65 16 11 F -0.20 -4.97 13.98 44.97 0.63 -4.34 16 12 C 0.08 2.13 3.64 86.01 0.31 2.45 16 13 C 0.10 3.61 0.84 -10.16 -0.01 3.60 16 14 C -0.15 -6.09 5.87 31.56 0.19 -5.90 16 15 C 0.20 10.47 5.39 86.77 0.47 10.93 16 16 N -0.62 -32.60 3.40 -692.71 -2.36 -34.96 16 17 C -0.24 -13.49 10.28 84.03 0.86 -12.63 16 18 H 0.09 4.69 7.83 -2.91 -0.02 4.67 16 19 C -0.07 -4.04 5.49 84.86 0.47 -3.57 16 20 N -0.96 -59.66 10.31 21.65 0.22 -59.44 16 21 Si 0.98 46.65 29.55 68.60 2.03 48.67 16 22 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 24 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 25 C 0.15 5.89 6.42 86.55 0.56 6.45 16 26 O -0.37 -13.39 9.93 -148.95 -1.48 -14.87 16 27 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 31 H 0.10 2.41 7.06 -2.39 -0.02 2.39 16 32 H 0.09 1.40 8.06 -2.39 -0.02 1.38 16 33 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.06 1.19 8.13 -2.39 -0.02 1.17 16 35 H 0.08 1.06 5.90 -2.39 -0.01 1.04 16 36 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.09 1.00 8.13 -2.39 -0.02 0.98 16 38 H 0.10 2.12 8.05 -2.39 -0.02 2.11 16 39 H 0.12 2.91 3.95 -2.39 -0.01 2.90 16 40 H 0.06 2.43 6.08 -2.38 -0.01 2.41 16 41 H 0.08 2.98 7.42 -2.38 -0.02 2.96 16 42 H 0.01 0.35 7.52 -2.38 -0.02 0.33 16 43 H 0.00 0.12 7.37 -2.39 -0.02 0.10 16 44 H 0.24 14.88 8.31 -92.71 -0.77 14.11 16 45 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 46 H 0.06 2.12 7.99 -2.39 -0.02 2.10 16 Total: -1.00 -74.30 353.38 3.49 -70.81 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 0.97 Total: 13.63 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: 5.93 Total: 15.25 kcal Atomic # 7 Polarization: -107.45 SS G_CDS: -4.55 Total: -112.00 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -1.53 Total: -32.03 kcal Atomic # 9 Polarization: -4.97 SS G_CDS: 0.63 Total: -4.34 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.67 kcal Total: -74.30 3.49 -70.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071127548.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.864 kcal (2) G-P(sol) polarization free energy of solvation -74.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds