Wall clock time and date at job start Tue Mar 31 2020 10:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.99451 * 2 1 4 4 C 1.54333 * 109.77679 * 121.16237 * 2 1 3 5 5 H 1.09000 * 110.51285 * 215.80617 * 4 2 1 6 6 N 1.46500 * 111.00529 * 338.95568 * 4 2 1 7 7 C 1.36935 * 120.00247 * 200.23665 * 6 4 2 8 8 H 1.07999 * 119.99705 * 359.97438 * 7 6 4 9 9 C 1.38816 * 120.00064 * 180.02562 * 7 6 4 10 10 N 1.31612 * 119.99800 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99898 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47250 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47239 * 119.99514 * 11 9 7 14 14 H 1.48494 * 109.46910 * 239.99970 * 11 9 7 15 15 C 1.55160 * 103.01987 * 97.49703 * 4 2 1 16 16 C 1.54905 * 101.58442 * 35.30228 * 15 4 2 17 17 N 1.47022 * 109.87773 * 238.90008 * 2 1 3 18 18 C 1.34776 * 125.64919 * 59.56541 * 17 2 1 19 19 O 1.21282 * 119.99739 * 359.71063 * 18 17 2 20 20 C 1.50694 * 120.00228 * 179.71288 * 18 17 2 21 21 H 1.08999 * 115.56039 * 34.30454 * 20 18 17 22 22 C 1.53077 * 117.49245 * 248.60300 * 20 18 17 23 23 C 1.52999 * 59.98363 * 252.50946 * 22 20 18 24 24 H 1.09002 * 117.50020 * 107.49702 * 23 22 20 25 25 C 1.50702 * 117.50424 * 252.50120 * 23 22 20 26 26 C 1.38234 * 120.00257 * 188.74850 * 25 23 22 27 27 C 1.38238 * 119.99675 * 180.25732 * 26 25 23 28 28 C 1.38228 * 120.00110 * 359.52133 * 27 26 25 29 29 C 1.38234 * 120.00090 * 0.43562 * 28 27 26 30 30 C 1.38235 * 119.99522 * 8.71862 * 25 23 22 31 31 H 1.08995 * 109.47465 * 179.64617 * 1 2 3 32 32 H 1.09002 * 109.47115 * 299.64665 * 1 2 3 33 33 H 1.09002 * 109.47237 * 59.64277 * 1 2 3 34 34 H 0.97002 * 119.99453 * 20.23924 * 6 4 2 35 35 H 0.97004 * 119.99771 * 179.97438 * 10 9 7 36 36 H 1.09005 * 111.00388 * 277.23180 * 15 4 2 37 37 H 1.08997 * 111.03588 * 153.39602 * 15 4 2 38 38 H 1.09001 * 110.37034 * 204.15423 * 16 15 4 39 39 H 1.09000 * 110.36543 * 81.82519 * 16 15 4 40 40 H 1.09002 * 117.51253 * 145.03711 * 22 20 18 41 41 H 1.08992 * 117.51278 * 359.97438 * 22 20 18 42 42 H 1.08002 * 119.99744 * 359.97115 * 26 25 23 43 43 H 1.08004 * 119.99577 * 179.72816 * 27 26 25 44 44 H 1.07998 * 119.99898 * 180.21654 * 28 27 26 45 45 H 1.08001 * 120.00324 * 179.78918 * 29 28 27 46 46 H 1.07996 * 120.00471 * 0.02562 * 30 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0522 -0.7515 1.2427 5 1 2.9606 -0.2815 1.6196 6 7 1.0288 -0.8105 2.2893 7 6 1.3908 -1.0478 3.5884 8 1 2.4308 -1.1920 3.8414 9 6 0.4209 -1.1042 4.5800 10 7 -0.8465 -0.9290 4.2715 11 14 0.9147 -1.4287 6.3521 12 1 2.3886 -1.5901 6.4336 13 1 0.4939 -0.2850 7.2006 14 1 0.2542 -2.6696 6.8306 15 6 2.3561 -2.1697 0.6915 16 6 2.8612 -1.8467 -0.7368 17 7 2.0299 -0.7142 -1.1839 18 6 1.7753 -0.3846 -2.4657 19 8 1.0746 0.5726 -2.7179 20 6 2.3611 -1.2055 -3.5854 21 1 2.4557 -2.2730 -3.3863 22 6 3.4382 -0.5500 -4.4535 23 6 2.0351 -0.7803 -5.0186 24 1 1.3965 0.0930 -5.1514 25 6 1.8691 -1.8695 -6.0468 26 6 0.6712 -2.0045 -6.7234 27 6 0.5172 -3.0069 -7.6627 28 6 1.5643 -3.8681 -7.9326 29 6 2.7625 -3.7325 -7.2566 30 6 2.9149 -2.7331 -6.3138 31 1 -0.3634 -1.0276 -0.0063 32 1 -0.3633 0.5083 0.8932 33 1 -0.3634 0.5194 -0.8868 34 1 0.0947 -0.6814 2.0619 35 1 -1.5243 -0.9688 4.9643 36 1 1.4521 -2.7778 0.6580 37 1 3.1325 -2.6597 1.2790 38 1 2.7176 -2.7050 -1.3931 39 1 3.9122 -1.5589 -0.7114 40 1 4.2412 -1.1863 -4.8256 41 1 3.7224 0.4748 -4.2148 42 1 -0.1458 -1.3297 -6.5148 43 1 -0.4201 -3.1152 -8.1882 44 1 1.4451 -4.6490 -8.6690 45 1 3.5795 -4.4074 -7.4650 46 1 3.8508 -2.6276 -5.7852 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075054480.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:24:36 Heat of formation + Delta-G solvation = 36.234883 kcal Electronic energy + Delta-G solvation = -25569.232460 eV Core-core repulsion = 22038.914143 eV Total energy + Delta-G solvation = -3530.318317 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.46440 -39.49513 -37.86339 -36.17391 -34.17775 -31.72146 -31.20112 -30.81064 -30.65381 -28.93752 -25.24427 -24.89842 -24.03377 -23.23565 -22.65381 -22.11072 -20.61697 -19.37961 -18.60252 -17.70976 -17.44081 -16.78029 -15.72083 -15.66125 -15.30520 -14.99801 -14.72635 -14.26505 -14.20136 -13.67451 -13.59603 -13.48061 -13.15776 -12.97302 -12.75907 -12.43056 -12.22043 -11.96084 -11.77622 -11.53148 -11.52763 -11.26221 -11.21916 -10.99461 -10.89034 -10.83858 -10.62202 -10.45359 -10.20005 -9.97528 -9.74258 -9.53098 -9.16986 -8.96698 -8.80197 -8.38979 -7.03556 -5.82915 -3.12710 1.04137 1.15341 2.60304 3.08248 3.39971 3.44357 3.45847 3.47994 3.87801 4.28134 4.52169 4.54008 4.62374 4.66000 4.74737 4.82302 4.90178 5.00875 5.06499 5.20442 5.24770 5.34584 5.40245 5.46007 5.53587 5.59554 5.64217 5.71332 5.74774 5.80389 5.81850 5.89382 6.05447 6.11517 6.22633 6.23008 6.26776 6.32363 6.40428 6.55772 6.56316 6.71919 6.74382 6.82976 6.98879 7.65573 7.77670 8.34605 8.36951 9.47282 10.02507 10.37480 11.39661 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.026570 B = 0.002458 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.586512 B =11390.666971 C =11469.159198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.129 3.871 3 H 0.071 0.929 4 C 0.174 3.826 5 H 0.062 0.938 6 N -0.717 5.717 7 C -0.243 4.243 8 H 0.072 0.928 9 C -0.011 4.011 10 N -0.931 5.931 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 C -0.154 4.154 16 C 0.099 3.901 17 N -0.604 5.604 18 C 0.556 3.444 19 O -0.544 6.544 20 C -0.170 4.170 21 H 0.123 0.877 22 C -0.144 4.144 23 C -0.086 4.086 24 H 0.127 0.873 25 C -0.050 4.050 26 C -0.109 4.109 27 C -0.118 4.118 28 C -0.126 4.126 29 C -0.118 4.118 30 C -0.121 4.121 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.391 0.609 35 H 0.256 0.744 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.107 0.893 41 H 0.104 0.896 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.120 0.880 45 H 0.121 0.879 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.858 -4.618 -23.150 25.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.025 3.975 3 H 0.089 0.911 4 C 0.062 3.938 5 H 0.080 0.920 6 N -0.361 5.361 7 C -0.374 4.374 8 H 0.090 0.910 9 C -0.208 4.208 10 N -0.579 5.579 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.219 1.219 15 C -0.195 4.195 16 C -0.024 4.024 17 N -0.337 5.337 18 C 0.344 3.656 19 O -0.422 6.422 20 C -0.191 4.191 21 H 0.141 0.859 22 C -0.181 4.181 23 C -0.105 4.105 24 H 0.145 0.855 25 C -0.050 4.050 26 C -0.127 4.127 27 C -0.136 4.136 28 C -0.144 4.144 29 C -0.136 4.136 30 C -0.138 4.138 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.229 0.771 35 H 0.066 0.934 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.142 0.858 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.139 0.861 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 8.521 -4.098 -23.147 25.004 hybrid contribution -0.077 -0.413 1.021 1.104 sum 8.444 -4.511 -22.126 24.108 Atomic orbital electron populations 1.22000 0.94551 1.02441 1.02656 1.21835 0.95436 0.95698 0.84492 0.91090 1.21169 0.93209 0.92054 0.87393 0.91984 1.42669 1.05150 1.85311 1.02967 1.19278 0.93004 1.41147 0.83989 0.91006 1.24763 0.95300 1.02534 0.98169 1.69669 0.99336 1.56405 1.32447 0.86104 0.77520 0.77433 0.85015 1.20516 1.21825 1.21858 1.23554 1.01688 1.01298 0.92991 1.22381 0.94452 0.88464 0.97128 1.48504 1.49798 1.30594 1.04795 1.19140 0.80444 0.84211 0.81798 1.90672 1.38896 1.29316 1.83291 1.22339 1.05481 1.00560 0.90698 0.85885 1.23121 0.91755 1.02408 1.00867 1.21088 0.99767 0.99087 0.90553 0.85529 1.19160 0.94079 0.95530 0.96232 1.21047 0.96984 0.98495 0.96196 1.21157 0.98959 0.95400 0.98063 1.21160 0.93631 0.99504 1.00122 1.21123 0.97695 0.98171 0.96640 1.21081 0.98772 0.95406 0.98582 0.92531 0.90255 0.92142 0.77116 0.93417 0.90687 0.90574 0.91417 0.91596 0.87516 0.87723 0.85773 0.85984 0.86189 0.86063 0.85848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 7.94 37.16 0.30 -2.74 16 2 C 0.13 2.31 3.49 -66.95 -0.23 2.07 16 3 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 4 C 0.17 3.33 3.44 -66.09 -0.23 3.10 16 5 H 0.06 1.18 8.12 -51.93 -0.42 0.76 16 6 N -0.72 -17.33 5.02 -51.65 -0.26 -17.59 16 7 C -0.24 -6.50 9.98 -15.06 -0.15 -6.65 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 10 N -0.93 -27.58 13.06 55.49 0.72 -26.86 16 11 Si 0.91 21.90 29.55 -169.99 -5.02 16.88 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 14 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 15 C -0.15 -2.50 6.77 -24.58 -0.17 -2.67 16 16 C 0.10 1.29 6.69 -2.53 -0.02 1.28 16 17 N -0.60 -9.36 3.08 -163.01 -0.50 -9.86 16 18 C 0.56 8.62 7.42 -10.99 -0.08 8.53 16 19 O -0.54 -10.17 15.15 5.56 0.08 -10.08 16 20 C -0.17 -1.96 5.17 -91.73 -0.47 -2.43 16 21 H 0.12 1.28 7.07 -51.93 -0.37 0.92 16 22 C -0.14 -1.34 9.57 -26.69 -0.26 -1.60 16 23 C -0.09 -0.93 5.55 -91.77 -0.51 -1.44 16 24 H 0.13 1.53 7.67 -51.93 -0.40 1.13 16 25 C -0.05 -0.50 5.61 -104.62 -0.59 -1.09 16 26 C -0.11 -1.07 9.74 -39.58 -0.39 -1.46 16 27 C -0.12 -1.01 10.05 -39.59 -0.40 -1.41 16 28 C -0.13 -1.01 10.05 -39.59 -0.40 -1.40 16 29 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 30 C -0.12 -1.06 9.30 -39.58 -0.37 -1.42 16 31 H 0.06 1.11 8.06 -51.93 -0.42 0.69 16 32 H 0.08 1.64 6.74 -51.93 -0.35 1.29 16 33 H 0.06 1.16 6.74 -51.93 -0.35 0.81 16 34 H 0.39 10.02 4.97 -40.82 -0.20 9.82 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 36 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.07 0.75 7.01 -51.93 -0.36 0.39 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.11 0.75 6.18 -51.93 -0.32 0.43 16 41 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 43 H 0.12 0.81 8.06 -52.48 -0.42 0.38 16 44 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 45 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 46 H 0.12 0.87 6.02 -52.49 -0.32 0.56 16 LS Contribution 371.13 15.07 5.59 5.59 Total: -1.00 -31.44 371.13 -10.69 -42.13 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -6.86 Total: 10.88 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -4.45 Total: -11.09 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: -0.04 Total: -54.31 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.08 Total: -10.08 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.44 -10.69 -42.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075054480.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.365 kcal (2) G-P(sol) polarization free energy of solvation -31.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds