Wall clock time and date at job start Tue Mar 31 2020 10:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.99451 * 2 1 4 4 C 1.54333 * 109.77679 * 121.16237 * 2 1 3 5 5 H 1.09000 * 110.51285 * 215.80617 * 4 2 1 6 6 N 1.46500 * 111.00529 * 338.95568 * 4 2 1 7 7 C 1.36935 * 120.00247 * 200.23665 * 6 4 2 8 8 H 1.07999 * 119.99705 * 359.97438 * 7 6 4 9 9 C 1.38816 * 120.00064 * 180.02562 * 7 6 4 10 10 N 1.31612 * 119.99800 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99898 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47250 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47239 * 119.99514 * 11 9 7 14 14 H 1.48494 * 109.46910 * 239.99970 * 11 9 7 15 15 C 1.55160 * 103.01987 * 97.49703 * 4 2 1 16 16 C 1.54905 * 101.58442 * 35.30228 * 15 4 2 17 17 N 1.47022 * 109.87773 * 238.90008 * 2 1 3 18 18 C 1.34776 * 125.64919 * 59.56541 * 17 2 1 19 19 O 1.21282 * 119.99739 * 359.71063 * 18 17 2 20 20 C 1.50694 * 120.00228 * 179.71288 * 18 17 2 21 21 H 1.08999 * 115.56039 * 34.30454 * 20 18 17 22 22 C 1.53077 * 117.49245 * 248.60300 * 20 18 17 23 23 C 1.52999 * 59.98363 * 252.50946 * 22 20 18 24 24 H 1.09002 * 117.50020 * 107.49702 * 23 22 20 25 25 C 1.50702 * 117.50424 * 252.50120 * 23 22 20 26 26 C 1.38234 * 120.00257 * 188.74850 * 25 23 22 27 27 C 1.38238 * 119.99675 * 180.25732 * 26 25 23 28 28 C 1.38228 * 120.00110 * 359.52133 * 27 26 25 29 29 C 1.38234 * 120.00090 * 0.43562 * 28 27 26 30 30 C 1.38235 * 119.99522 * 8.71862 * 25 23 22 31 31 H 1.08995 * 109.47465 * 179.64617 * 1 2 3 32 32 H 1.09002 * 109.47115 * 299.64665 * 1 2 3 33 33 H 1.09002 * 109.47237 * 59.64277 * 1 2 3 34 34 H 0.97002 * 119.99453 * 20.23924 * 6 4 2 35 35 H 0.97004 * 119.99771 * 179.97438 * 10 9 7 36 36 H 1.09005 * 111.00388 * 277.23180 * 15 4 2 37 37 H 1.08997 * 111.03588 * 153.39602 * 15 4 2 38 38 H 1.09001 * 110.37034 * 204.15423 * 16 15 4 39 39 H 1.09000 * 110.36543 * 81.82519 * 16 15 4 40 40 H 1.09002 * 117.51253 * 145.03711 * 22 20 18 41 41 H 1.08992 * 117.51278 * 359.97438 * 22 20 18 42 42 H 1.08002 * 119.99744 * 359.97115 * 26 25 23 43 43 H 1.08004 * 119.99577 * 179.72816 * 27 26 25 44 44 H 1.07998 * 119.99898 * 180.21654 * 28 27 26 45 45 H 1.08001 * 120.00324 * 179.78918 * 29 28 27 46 46 H 1.07996 * 120.00471 * 0.02562 * 30 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0522 -0.7515 1.2427 5 1 2.9606 -0.2815 1.6196 6 7 1.0288 -0.8105 2.2893 7 6 1.3908 -1.0478 3.5884 8 1 2.4308 -1.1920 3.8414 9 6 0.4209 -1.1042 4.5800 10 7 -0.8465 -0.9290 4.2715 11 14 0.9147 -1.4287 6.3521 12 1 2.3886 -1.5901 6.4336 13 1 0.4939 -0.2850 7.2006 14 1 0.2542 -2.6696 6.8306 15 6 2.3561 -2.1697 0.6915 16 6 2.8612 -1.8467 -0.7368 17 7 2.0299 -0.7142 -1.1839 18 6 1.7753 -0.3846 -2.4657 19 8 1.0746 0.5726 -2.7179 20 6 2.3611 -1.2055 -3.5854 21 1 2.4557 -2.2730 -3.3863 22 6 3.4382 -0.5500 -4.4535 23 6 2.0351 -0.7803 -5.0186 24 1 1.3965 0.0930 -5.1514 25 6 1.8691 -1.8695 -6.0468 26 6 0.6712 -2.0045 -6.7234 27 6 0.5172 -3.0069 -7.6627 28 6 1.5643 -3.8681 -7.9326 29 6 2.7625 -3.7325 -7.2566 30 6 2.9149 -2.7331 -6.3138 31 1 -0.3634 -1.0276 -0.0063 32 1 -0.3633 0.5083 0.8932 33 1 -0.3634 0.5194 -0.8868 34 1 0.0947 -0.6814 2.0619 35 1 -1.5243 -0.9688 4.9643 36 1 1.4521 -2.7778 0.6580 37 1 3.1325 -2.6597 1.2790 38 1 2.7176 -2.7050 -1.3931 39 1 3.9122 -1.5589 -0.7114 40 1 4.2412 -1.1863 -4.8256 41 1 3.7224 0.4748 -4.2148 42 1 -0.1458 -1.3297 -6.5148 43 1 -0.4201 -3.1152 -8.1882 44 1 1.4451 -4.6490 -8.6690 45 1 3.5795 -4.4074 -7.4650 46 1 3.8508 -2.6276 -5.7852 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075054480.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:24:35 Heat of formation + Delta-G solvation = 19.522930 kcal Electronic energy + Delta-G solvation = -25569.957144 eV Core-core repulsion = 22038.914143 eV Total energy + Delta-G solvation = -3531.043002 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.56727 -40.37960 -39.06888 -37.15451 -35.93075 -33.46287 -32.14935 -31.82740 -31.49612 -30.58339 -26.80445 -26.20879 -24.96636 -24.68413 -23.45632 -23.14751 -21.41155 -20.71705 -19.84323 -19.44029 -18.56339 -17.70680 -17.02170 -16.88317 -16.45206 -16.04236 -15.87521 -15.61377 -15.43063 -14.93848 -14.82061 -14.56098 -14.23620 -14.00595 -13.80822 -13.74723 -13.46410 -13.22637 -13.03601 -12.93060 -12.87852 -12.81136 -12.56131 -12.20276 -12.06751 -12.01497 -11.92926 -11.68242 -11.59136 -11.50732 -11.40241 -10.93434 -10.83070 -9.79504 -9.68559 -9.47854 -9.01779 -7.93952 -5.23143 0.38796 0.52815 1.47648 1.49384 1.49935 1.59846 1.89665 2.57567 2.69306 3.09331 3.33994 3.42733 3.63850 3.74068 3.78585 3.86319 3.92528 3.99918 4.10736 4.16913 4.18517 4.27849 4.32079 4.36441 4.40500 4.54245 4.61971 4.64201 4.72182 4.76490 4.78853 4.85754 4.95127 5.04162 5.07701 5.16958 5.18561 5.20579 5.24983 5.32809 5.49750 5.55352 5.61273 5.65978 5.73468 6.14056 6.27734 6.56464 7.13510 7.34831 8.08340 8.31871 9.30098 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.026570 B = 0.002458 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.586512 B =11390.666971 C =11469.159198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.134 3.866 3 H 0.065 0.935 4 C 0.166 3.834 5 H 0.068 0.932 6 N -0.733 5.733 7 C -0.235 4.235 8 H 0.083 0.917 9 C -0.078 4.078 10 N -0.972 5.972 11 Si 0.973 3.027 12 H -0.262 1.262 13 H -0.298 1.298 14 H -0.296 1.296 15 C -0.145 4.145 16 C 0.107 3.893 17 N -0.605 5.605 18 C 0.550 3.450 19 O -0.585 6.585 20 C -0.174 4.174 21 H 0.143 0.857 22 C -0.120 4.120 23 C -0.091 4.091 24 H 0.103 0.897 25 C -0.064 4.064 26 C -0.132 4.132 27 C -0.127 4.127 28 C -0.131 4.131 29 C -0.122 4.122 30 C -0.123 4.123 31 H 0.046 0.954 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.379 0.621 35 H 0.250 0.750 36 H 0.053 0.947 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.140 0.860 41 H 0.100 0.900 42 H 0.116 0.884 43 H 0.135 0.865 44 H 0.142 0.858 45 H 0.146 0.854 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.083 -6.572 -24.630 28.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.030 3.970 3 H 0.083 0.917 4 C 0.056 3.944 5 H 0.086 0.914 6 N -0.376 5.376 7 C -0.367 4.367 8 H 0.101 0.899 9 C -0.270 4.270 10 N -0.623 5.623 11 Si 0.803 3.197 12 H -0.186 1.186 13 H -0.225 1.225 14 H -0.224 1.224 15 C -0.186 4.186 16 C -0.015 4.015 17 N -0.337 5.337 18 C 0.340 3.660 19 O -0.466 6.466 20 C -0.195 4.195 21 H 0.160 0.840 22 C -0.157 4.157 23 C -0.110 4.110 24 H 0.121 0.879 25 C -0.064 4.064 26 C -0.150 4.150 27 C -0.145 4.145 28 C -0.148 4.148 29 C -0.139 4.139 30 C -0.141 4.141 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.215 0.785 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.108 0.892 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.158 0.842 41 H 0.118 0.882 42 H 0.135 0.865 43 H 0.153 0.847 44 H 0.160 0.840 45 H 0.164 0.836 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 11.817 -6.075 -24.662 28.014 hybrid contribution -1.074 0.225 1.361 1.748 sum 10.743 -5.850 -23.302 26.317 Atomic orbital electron populations 1.21812 0.95960 1.01240 1.01174 1.21574 0.94169 0.95756 0.85511 0.91691 1.21379 0.92062 0.94285 0.86684 0.91405 1.42858 1.05696 1.85547 1.03491 1.19692 0.93313 1.38677 0.85024 0.89924 1.25574 0.95385 1.03852 1.02172 1.69835 1.00381 1.58855 1.33237 0.85065 0.77999 0.76475 0.80164 1.18566 1.22534 1.22356 1.23365 1.01384 0.98570 0.95291 1.22529 0.95239 0.88554 0.95195 1.48550 1.49990 1.30981 1.04194 1.19895 0.79722 0.84004 0.82352 1.90654 1.40720 1.31359 1.83879 1.22283 1.07072 1.00771 0.89341 0.83971 1.23265 0.91567 1.02563 0.98272 1.20993 1.00814 0.98763 0.90407 0.87926 1.19178 0.94757 0.95982 0.96503 1.21185 0.97221 0.99287 0.97309 1.21391 1.00040 0.95203 0.97872 1.21505 0.93423 0.99602 1.00316 1.21482 0.98344 0.98152 0.95968 1.21319 0.98981 0.95021 0.98788 0.93529 0.92463 0.92681 0.78470 0.94137 0.92784 0.89152 0.88465 0.88584 0.84245 0.88181 0.86548 0.84669 0.84045 0.83600 0.83806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.76 7.94 71.98 0.57 -5.19 16 2 C 0.13 4.83 3.49 45.35 0.16 4.99 16 3 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 4 C 0.17 6.25 3.44 46.18 0.16 6.41 16 5 H 0.07 2.49 8.12 -2.39 -0.02 2.47 16 6 N -0.73 -35.94 5.02 -317.31 -1.59 -37.53 16 7 C -0.24 -12.58 9.98 84.03 0.84 -11.74 16 8 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 9 C -0.08 -4.39 5.50 84.86 0.47 -3.93 16 10 N -0.97 -59.35 13.06 21.65 0.28 -59.06 16 11 Si 0.97 45.38 29.55 68.60 2.03 47.40 16 12 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 13 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 14 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 15 C -0.15 -4.44 6.77 31.99 0.22 -4.22 16 16 C 0.11 2.42 6.69 86.85 0.58 3.00 16 17 N -0.60 -17.92 3.08 -788.04 -2.43 -20.34 16 18 C 0.55 16.60 7.42 87.66 0.65 17.25 16 19 O -0.59 -22.38 15.15 -3.03 -0.05 -22.43 16 20 C -0.17 -3.62 5.17 -11.52 -0.06 -3.68 16 21 H 0.14 2.42 7.07 -2.39 -0.02 2.41 16 22 C -0.12 -1.87 9.57 30.62 0.29 -1.58 16 23 C -0.09 -1.87 5.55 -11.54 -0.06 -1.93 16 24 H 0.10 2.58 7.67 -2.39 -0.02 2.57 16 25 C -0.06 -1.20 5.61 -19.87 -0.11 -1.31 16 26 C -0.13 -2.55 9.74 22.27 0.22 -2.34 16 27 C -0.13 -2.03 10.05 22.27 0.22 -1.80 16 28 C -0.13 -1.75 10.05 22.27 0.22 -1.53 16 29 C -0.12 -1.54 10.05 22.27 0.22 -1.32 16 30 C -0.12 -1.77 9.30 22.27 0.21 -1.56 16 31 H 0.05 1.91 8.06 -2.39 -0.02 1.89 16 32 H 0.06 2.52 6.74 -2.39 -0.02 2.51 16 33 H 0.05 2.23 6.74 -2.39 -0.02 2.21 16 34 H 0.38 20.22 4.97 -92.71 -0.46 19.76 16 35 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 36 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 37 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.10 1.72 7.01 -2.39 -0.02 1.70 16 39 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.14 1.28 6.18 -2.39 -0.01 1.26 16 41 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.12 2.28 8.06 -2.91 -0.02 2.25 16 43 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 44 H 0.14 1.21 8.06 -2.91 -0.02 1.19 16 45 H 0.15 1.09 8.06 -2.91 -0.02 1.06 16 46 H 0.14 1.36 6.02 -2.91 -0.02 1.35 16 Total: -1.00 -70.51 371.13 3.56 -66.95 By element: Atomic # 1 Polarization: 34.95 SS G_CDS: 0.52 Total: 35.47 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: 4.79 Total: -10.47 kcal Atomic # 7 Polarization: -113.20 SS G_CDS: -3.74 Total: -116.94 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.05 Total: -22.43 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Total: -70.51 3.56 -66.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075054480.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.476 kcal (2) G-P(sol) polarization free energy of solvation -70.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds