Wall clock time and date at job start Tue Mar 31 2020 10:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 119.99793 * 2 1 3 5 5 O 1.21285 * 120.00039 * 120.00069 * 4 2 1 6 6 N 1.34780 * 120.00249 * 299.99993 * 4 2 1 7 7 C 1.47398 * 125.58649 * 0.02562 * 6 4 2 8 8 C 1.54855 * 104.80983 * 204.60691 * 7 6 4 9 9 C 1.55123 * 101.77751 * 322.81450 * 8 7 6 10 10 H 1.09004 * 113.45925 * 159.24480 * 9 8 7 11 11 C 1.54045 * 108.25861 * 286.09093 * 9 8 7 12 12 N 1.46709 * 106.82504 * 135.80749 * 11 9 8 13 13 C 1.36939 * 125.31720 * 161.84267 * 12 11 9 14 14 H 1.07998 * 120.00493 * 359.97438 * 13 12 11 15 15 C 1.38815 * 119.99544 * 179.97438 * 13 12 11 16 16 N 1.31619 * 119.99999 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99740 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47266 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46961 * 120.00373 * 17 15 13 20 20 H 1.48506 * 109.47092 * 240.00190 * 17 15 13 21 21 C 1.46628 * 109.35697 * 341.82008 * 12 11 9 22 22 C 1.46731 * 125.59248 * 179.71722 * 6 4 2 23 23 H 1.09001 * 111.32703 * 56.12322 * 22 6 4 24 24 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 25 25 C 1.38230 * 120.00132 * 299.72877 * 24 2 1 26 26 C 1.38236 * 120.00243 * 179.76235 * 25 24 2 27 27 C 1.38236 * 119.99591 * 0.50639 * 26 25 24 28 28 C 1.38235 * 120.00358 * 359.75131 * 27 26 25 29 29 C 1.38236 * 119.99842 * 119.99752 * 24 2 1 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 33 33 H 1.08998 * 110.37006 * 323.43838 * 7 6 4 34 34 H 1.08999 * 110.37240 * 85.77381 * 7 6 4 35 35 H 1.08997 * 110.96971 * 80.94218 * 8 7 6 36 36 H 1.09001 * 110.96406 * 204.65702 * 8 7 6 37 37 H 1.09000 * 109.98824 * 255.14478 * 11 9 8 38 38 H 1.08997 * 109.98892 * 16.42604 * 11 9 8 39 39 H 0.96999 * 119.99652 * 179.97438 * 16 15 13 40 40 H 1.08999 * 109.75972 * 120.93193 * 21 12 11 41 41 H 1.08998 * 109.75996 * 241.63143 * 21 12 11 42 42 H 1.08005 * 119.99878 * 359.97438 * 25 24 2 43 43 H 1.08002 * 120.00278 * 180.23027 * 26 25 24 44 44 H 1.07997 * 119.99636 * 179.72032 * 27 26 25 45 45 H 1.08000 * 120.00113 * 179.97438 * 28 27 26 46 46 H 1.08002 * 120.00290 * 0.02562 * 29 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1192 6 7 1.7067 -0.2499 2.4546 7 6 0.8705 0.9318 2.7321 8 6 1.3030 1.4002 4.1433 9 6 1.5512 0.0488 4.8633 10 1 2.1945 0.1354 5.7390 11 6 0.1848 -0.5938 5.1680 12 7 0.2944 -2.0131 4.8129 13 6 -0.5481 -3.0038 5.2420 14 1 -1.3733 -2.7651 5.8964 15 6 -0.3413 -4.3149 4.8356 16 7 0.6648 -4.6059 4.0383 17 14 -1.4900 -5.6665 5.4213 18 1 -2.5326 -5.0824 6.3028 19 1 -2.1366 -6.3090 4.2491 20 1 -0.7142 -6.6823 6.1773 21 6 1.4466 -2.2048 3.9266 22 6 2.1213 -0.8463 3.7295 23 1 3.2063 -0.9263 3.7955 24 6 2.0324 -0.7104 -1.2304 25 6 1.7031 -2.0355 -1.4463 26 6 2.1599 -2.6858 -2.5774 27 6 2.9546 -2.0139 -3.4873 28 6 3.2883 -0.6904 -3.2688 29 6 2.8271 -0.0386 -2.1403 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.0627 1.7136 1.9974 34 1 -0.1848 0.6589 2.7298 35 1 2.2182 1.9903 4.0950 36 1 0.5049 1.9611 4.6297 37 1 -0.0468 -0.4918 6.2282 38 1 -0.5923 -0.1184 4.5695 39 1 0.8095 -5.5221 3.7547 40 1 2.1482 -2.9046 4.3804 41 1 1.1110 -2.5916 2.9644 42 1 1.0862 -2.5617 -0.7329 43 1 1.8996 -3.7200 -2.7480 44 1 3.3152 -2.5233 -4.3687 45 1 3.9096 -0.1656 -3.9795 46 1 3.0883 0.9953 -1.9693 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076483478.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:54 Heat of formation + Delta-G solvation = 26.923158 kcal Electronic energy + Delta-G solvation = -27182.382749 eV Core-core repulsion = 23651.660646 eV Total energy + Delta-G solvation = -3530.722104 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.47186 -39.20099 -37.57526 -34.85550 -33.95425 -32.06705 -30.85972 -30.76119 -29.52650 -28.44087 -26.44450 -24.73653 -24.57647 -22.71915 -22.37834 -21.39816 -20.43512 -19.55549 -18.38914 -17.04580 -16.75410 -16.53111 -15.66115 -15.21193 -15.13712 -14.69042 -14.28382 -14.05454 -13.82656 -13.53266 -13.35790 -13.21058 -12.92892 -12.82398 -12.51403 -12.17316 -12.13566 -11.99546 -11.71569 -11.51559 -11.44485 -11.05994 -11.00086 -10.81499 -10.78677 -10.67541 -10.43405 -10.20459 -10.10417 -9.83550 -9.67500 -9.25843 -8.73224 -8.59394 -8.54358 -8.10691 -6.77951 -5.64864 -3.00903 1.46430 1.57807 3.08328 3.39519 3.41995 3.46717 3.49942 3.97236 4.51493 4.63934 4.66948 4.79504 4.91479 5.09350 5.12052 5.14336 5.21903 5.28336 5.33161 5.49670 5.51380 5.60497 5.61738 5.69111 5.73242 5.78050 5.81983 5.87666 5.89414 6.03119 6.10628 6.18799 6.23155 6.24140 6.36626 6.52101 6.56233 6.60086 6.66405 6.67557 6.78665 6.89667 7.14146 7.59977 7.70132 7.92757 8.04292 8.32581 8.66753 9.26705 9.87823 10.51338 11.44851 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013349 B = 0.004602 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.083576 B = 6082.635027 C = 7558.928178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.066 4.066 3 H 0.097 0.903 4 C 0.530 3.470 5 O -0.522 6.522 6 N -0.602 5.602 7 C 0.100 3.900 8 C -0.125 4.125 9 C -0.111 4.111 10 H 0.097 0.903 11 C 0.142 3.858 12 N -0.602 5.602 13 C -0.233 4.233 14 H 0.078 0.922 15 C -0.006 4.006 16 N -0.914 5.914 17 Si 0.909 3.091 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.290 1.290 21 C 0.177 3.823 22 C 0.116 3.884 23 H 0.076 0.924 24 C -0.063 4.063 25 C -0.078 4.078 26 C -0.122 4.122 27 C -0.124 4.124 28 C -0.128 4.128 29 C -0.115 4.115 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.033 0.967 38 H 0.018 0.982 39 H 0.252 0.748 40 H 0.051 0.949 41 H 0.054 0.946 42 H 0.123 0.877 43 H 0.120 0.880 44 H 0.117 0.883 45 H 0.118 0.882 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.386 14.567 -10.078 17.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.087 4.087 3 H 0.115 0.885 4 C 0.318 3.682 5 O -0.397 6.397 6 N -0.337 5.337 7 C -0.023 4.023 8 C -0.164 4.164 9 C -0.131 4.131 10 H 0.115 0.885 11 C 0.016 3.984 12 N -0.329 5.329 13 C -0.362 4.362 14 H 0.096 0.904 15 C -0.202 4.202 16 N -0.561 5.561 17 Si 0.740 3.260 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.217 1.217 21 C 0.051 3.949 22 C 0.013 3.987 23 H 0.094 0.906 24 C -0.063 4.063 25 C -0.096 4.096 26 C -0.140 4.140 27 C -0.142 4.142 28 C -0.146 4.146 29 C -0.133 4.133 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.052 0.948 38 H 0.035 0.965 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.141 0.859 43 H 0.138 0.862 44 H 0.135 0.865 45 H 0.136 0.864 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.763 13.755 -10.246 17.373 hybrid contribution -0.557 -0.787 0.336 1.021 sum 2.206 12.968 -9.910 16.470 Atomic orbital electron populations 1.21924 0.92092 1.03647 1.02772 1.20232 0.97812 0.99650 0.91044 0.88484 1.19956 0.80700 0.84631 0.82957 1.90757 1.37718 1.25456 1.85742 1.48360 1.51027 1.29015 1.05289 1.22400 0.95695 0.87445 0.96757 1.22771 1.01590 0.97100 0.94899 1.23146 0.99030 0.93687 0.97198 0.88476 1.21295 0.92894 0.86635 0.97570 1.44236 1.31680 1.01396 1.55587 1.19050 1.06256 0.86385 1.24460 0.90439 1.24829 0.98415 0.97268 0.99730 1.70012 1.30311 1.18138 1.37679 0.86090 0.79863 0.82251 0.77812 1.20532 1.21807 1.21738 1.21113 0.88777 0.89421 0.95549 1.22474 0.98586 0.96231 0.81432 0.90625 1.19334 0.97955 0.94460 0.94587 1.21033 0.98563 0.93770 0.96239 1.21140 0.98355 0.99868 0.94594 1.21096 0.98788 0.94861 0.99423 1.21001 1.00768 0.95078 0.97776 1.20948 0.98004 0.99648 0.94724 0.91572 0.91655 0.91057 0.91244 0.90905 0.91118 0.90001 0.94841 0.96482 0.93737 0.93125 0.92775 0.85920 0.86177 0.86483 0.86422 0.86448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.81 37.16 0.33 -1.52 16 2 C -0.07 -0.92 2.25 -92.93 -0.21 -1.13 16 3 H 0.10 1.09 7.57 -51.93 -0.39 0.70 16 4 C 0.53 9.72 6.63 -10.98 -0.07 9.65 16 5 O -0.52 -11.87 14.96 5.55 0.08 -11.78 16 6 N -0.60 -10.45 2.99 -162.72 -0.49 -10.94 16 7 C 0.10 1.32 4.66 -2.57 -0.01 1.30 16 8 C -0.13 -1.52 6.35 -24.63 -0.16 -1.67 16 9 C -0.11 -1.81 4.35 -87.74 -0.38 -2.19 16 10 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 11 C 0.14 2.83 6.45 -3.38 -0.02 2.81 16 12 N -0.60 -15.45 3.38 -172.35 -0.58 -16.03 16 13 C -0.23 -6.57 10.25 -15.06 -0.15 -6.72 16 14 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 15 C -0.01 -0.16 5.48 -17.43 -0.10 -0.26 16 16 N -0.91 -27.94 10.24 55.49 0.57 -27.37 16 17 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 C 0.18 4.50 4.91 -4.00 -0.02 4.48 16 22 C 0.12 2.29 3.55 -66.61 -0.24 2.05 16 23 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 24 C -0.06 -0.92 4.40 -104.63 -0.46 -1.38 16 25 C -0.08 -1.25 7.92 -39.59 -0.31 -1.56 16 26 C -0.12 -1.71 10.05 -39.58 -0.40 -2.10 16 27 C -0.12 -1.52 10.05 -39.58 -0.40 -1.91 16 28 C -0.13 -1.51 10.05 -39.58 -0.40 -1.91 16 29 C -0.12 -1.45 9.67 -39.58 -0.38 -1.84 16 30 H 0.07 0.97 7.41 -51.93 -0.38 0.59 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.84 4.99 -51.93 -0.26 0.58 16 33 H 0.07 0.70 7.31 -51.93 -0.38 0.33 16 34 H 0.07 1.02 6.14 -51.93 -0.32 0.70 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16 37 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.02 0.34 6.52 -51.93 -0.34 0.00 16 39 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.05 1.47 7.33 -51.93 -0.38 1.09 16 41 H 0.05 1.59 6.66 -51.93 -0.35 1.24 16 42 H 0.12 2.18 7.52 -52.48 -0.39 1.79 16 43 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 44 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 45 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 46 H 0.12 1.19 7.95 -52.49 -0.42 0.77 16 LS Contribution 356.77 15.07 5.38 5.38 Total: -1.00 -34.31 356.77 -10.41 -44.72 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -6.96 Total: 2.45 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -3.38 Total: -3.91 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: -0.50 Total: -54.34 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.08 Total: -11.78 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.31 -10.41 -44.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076483478.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.643 kcal (2) G-P(sol) polarization free energy of solvation -34.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds