Wall clock time and date at job start Tue Mar 31 2020 10:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 119.99793 * 2 1 3 5 5 O 1.21285 * 120.00039 * 120.00069 * 4 2 1 6 6 N 1.34780 * 120.00249 * 299.99993 * 4 2 1 7 7 C 1.47398 * 125.58649 * 0.02562 * 6 4 2 8 8 C 1.54855 * 104.80983 * 204.60691 * 7 6 4 9 9 C 1.55123 * 101.77751 * 322.81450 * 8 7 6 10 10 H 1.09004 * 113.45925 * 159.24480 * 9 8 7 11 11 C 1.54045 * 108.25861 * 286.09093 * 9 8 7 12 12 N 1.46709 * 106.82504 * 135.80749 * 11 9 8 13 13 C 1.36939 * 125.31720 * 161.84267 * 12 11 9 14 14 H 1.07998 * 120.00493 * 359.97438 * 13 12 11 15 15 C 1.38815 * 119.99544 * 179.97438 * 13 12 11 16 16 N 1.31619 * 119.99999 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99740 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47266 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46961 * 120.00373 * 17 15 13 20 20 H 1.48506 * 109.47092 * 240.00190 * 17 15 13 21 21 C 1.46628 * 109.35697 * 341.82008 * 12 11 9 22 22 C 1.46731 * 125.59248 * 179.71722 * 6 4 2 23 23 H 1.09001 * 111.32703 * 56.12322 * 22 6 4 24 24 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 25 25 C 1.38230 * 120.00132 * 299.72877 * 24 2 1 26 26 C 1.38236 * 120.00243 * 179.76235 * 25 24 2 27 27 C 1.38236 * 119.99591 * 0.50639 * 26 25 24 28 28 C 1.38235 * 120.00358 * 359.75131 * 27 26 25 29 29 C 1.38236 * 119.99842 * 119.99752 * 24 2 1 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 33 33 H 1.08998 * 110.37006 * 323.43838 * 7 6 4 34 34 H 1.08999 * 110.37240 * 85.77381 * 7 6 4 35 35 H 1.08997 * 110.96971 * 80.94218 * 8 7 6 36 36 H 1.09001 * 110.96406 * 204.65702 * 8 7 6 37 37 H 1.09000 * 109.98824 * 255.14478 * 11 9 8 38 38 H 1.08997 * 109.98892 * 16.42604 * 11 9 8 39 39 H 0.96999 * 119.99652 * 179.97438 * 16 15 13 40 40 H 1.08999 * 109.75972 * 120.93193 * 21 12 11 41 41 H 1.08998 * 109.75996 * 241.63143 * 21 12 11 42 42 H 1.08005 * 119.99878 * 359.97438 * 25 24 2 43 43 H 1.08002 * 120.00278 * 180.23027 * 26 25 24 44 44 H 1.07997 * 119.99636 * 179.72032 * 27 26 25 45 45 H 1.08000 * 120.00113 * 179.97438 * 28 27 26 46 46 H 1.08002 * 120.00290 * 0.02562 * 29 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1192 6 7 1.7067 -0.2499 2.4546 7 6 0.8705 0.9318 2.7321 8 6 1.3030 1.4002 4.1433 9 6 1.5512 0.0488 4.8633 10 1 2.1945 0.1354 5.7390 11 6 0.1848 -0.5938 5.1680 12 7 0.2944 -2.0131 4.8129 13 6 -0.5481 -3.0038 5.2420 14 1 -1.3733 -2.7651 5.8964 15 6 -0.3413 -4.3149 4.8356 16 7 0.6648 -4.6059 4.0383 17 14 -1.4900 -5.6665 5.4213 18 1 -2.5326 -5.0824 6.3028 19 1 -2.1366 -6.3090 4.2491 20 1 -0.7142 -6.6823 6.1773 21 6 1.4466 -2.2048 3.9266 22 6 2.1213 -0.8463 3.7295 23 1 3.2063 -0.9263 3.7955 24 6 2.0324 -0.7104 -1.2304 25 6 1.7031 -2.0355 -1.4463 26 6 2.1599 -2.6858 -2.5774 27 6 2.9546 -2.0139 -3.4873 28 6 3.2883 -0.6904 -3.2688 29 6 2.8271 -0.0386 -2.1403 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.0627 1.7136 1.9974 34 1 -0.1848 0.6589 2.7298 35 1 2.2182 1.9903 4.0950 36 1 0.5049 1.9611 4.6297 37 1 -0.0468 -0.4918 6.2282 38 1 -0.5923 -0.1184 4.5695 39 1 0.8095 -5.5221 3.7547 40 1 2.1482 -2.9046 4.3804 41 1 1.1110 -2.5916 2.9644 42 1 1.0862 -2.5617 -0.7329 43 1 1.8996 -3.7200 -2.7480 44 1 3.3152 -2.5233 -4.3687 45 1 3.9096 -0.1656 -3.9795 46 1 3.0883 0.9953 -1.9693 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076483478.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:54 Heat of formation + Delta-G solvation = 5.391500 kcal Electronic energy + Delta-G solvation = -27183.316432 eV Core-core repulsion = 23651.660646 eV Total energy + Delta-G solvation = -3531.655787 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.83368 -40.39392 -38.97581 -36.57808 -35.21196 -33.80812 -32.43829 -31.78227 -30.90460 -29.89220 -28.01239 -26.59980 -25.81423 -23.92367 -23.41604 -22.86934 -21.96044 -20.91653 -19.81902 -18.88925 -18.18485 -17.67964 -16.99523 -16.84467 -16.36424 -16.24512 -15.69149 -15.41740 -15.38412 -14.77711 -14.71984 -14.42344 -14.22610 -14.11422 -13.94061 -13.67799 -13.52802 -13.21843 -13.02572 -12.94262 -12.84853 -12.80234 -12.55158 -12.36474 -12.08892 -11.89907 -11.86876 -11.81877 -11.74755 -11.57600 -11.38289 -10.81734 -10.64273 -9.77551 -9.62963 -9.55925 -8.91957 -7.86418 -5.24990 0.43297 0.53703 1.39558 1.41622 1.52224 1.68896 2.10519 2.45536 2.91785 3.30664 3.40841 3.56782 3.59853 3.79998 3.81357 4.01292 4.02982 4.12589 4.22420 4.25225 4.27990 4.32379 4.44057 4.54989 4.61226 4.62565 4.66549 4.73516 4.82373 4.85080 4.89188 4.95750 5.11068 5.13309 5.16420 5.19690 5.21234 5.32408 5.41025 5.43551 5.56799 5.63293 5.64349 5.72863 5.79271 6.14102 6.16347 6.67286 7.05385 7.27649 7.77108 8.38854 9.22031 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013349 B = 0.004602 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.083576 B = 6082.635027 C = 7558.928178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.054 4.054 3 H 0.140 0.860 4 C 0.518 3.482 5 O -0.582 6.582 6 N -0.603 5.603 7 C 0.090 3.910 8 C -0.106 4.106 9 C -0.098 4.098 10 H 0.115 0.885 11 C 0.135 3.865 12 N -0.624 5.624 13 C -0.240 4.240 14 H 0.090 0.910 15 C -0.072 4.072 16 N -0.954 5.954 17 Si 0.978 3.022 18 H -0.256 1.256 19 H -0.297 1.297 20 H -0.293 1.293 21 C 0.197 3.803 22 C 0.118 3.882 23 H 0.068 0.932 24 C -0.080 4.080 25 C -0.110 4.110 26 C -0.141 4.141 27 C -0.124 4.124 28 C -0.124 4.124 29 C -0.114 4.114 30 H 0.027 0.973 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.115 0.885 34 H 0.065 0.935 35 H 0.099 0.901 36 H 0.114 0.886 37 H 0.044 0.956 38 H 0.033 0.967 39 H 0.241 0.759 40 H -0.005 1.005 41 H -0.001 1.001 42 H 0.080 0.920 43 H 0.121 0.879 44 H 0.145 0.855 45 H 0.155 0.845 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.081 19.290 -10.616 22.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.075 4.075 3 H 0.158 0.842 4 C 0.308 3.692 5 O -0.461 6.461 6 N -0.336 5.336 7 C -0.031 4.031 8 C -0.144 4.144 9 C -0.118 4.118 10 H 0.133 0.867 11 C 0.010 3.990 12 N -0.350 5.350 13 C -0.369 4.369 14 H 0.108 0.892 15 C -0.264 4.264 16 N -0.603 5.603 17 Si 0.806 3.194 18 H -0.180 1.180 19 H -0.224 1.224 20 H -0.220 1.220 21 C 0.071 3.929 22 C 0.013 3.987 23 H 0.086 0.914 24 C -0.080 4.080 25 C -0.128 4.128 26 C -0.159 4.159 27 C -0.142 4.142 28 C -0.142 4.142 29 C -0.132 4.132 30 H 0.046 0.954 31 H 0.113 0.887 32 H 0.102 0.898 33 H 0.133 0.867 34 H 0.083 0.917 35 H 0.118 0.882 36 H 0.132 0.868 37 H 0.062 0.938 38 H 0.051 0.949 39 H 0.050 0.950 40 H 0.013 0.987 41 H 0.018 0.982 42 H 0.099 0.901 43 H 0.139 0.861 44 H 0.163 0.837 45 H 0.173 0.827 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.411 18.562 -10.751 21.586 hybrid contribution -0.464 -2.280 0.496 2.379 sum 1.947 16.282 -10.255 19.341 Atomic orbital electron populations 1.21903 0.91304 1.01814 1.04780 1.20279 0.98261 1.00823 0.88146 0.84189 1.20959 0.79735 0.84083 0.84458 1.90724 1.40531 1.28139 1.86732 1.48461 1.51102 1.29942 1.04097 1.22778 0.94484 0.86649 0.99166 1.22821 1.04113 0.94581 0.92891 1.23146 0.96560 0.95387 0.96702 0.86699 1.21603 0.95577 0.83575 0.98219 1.44552 1.31151 1.03785 1.55508 1.19550 1.06485 0.87251 1.23595 0.89223 1.25759 1.00227 1.00000 1.00446 1.70322 1.32658 1.17660 1.39681 0.85007 0.78183 0.78975 0.77198 1.18014 1.22424 1.22039 1.20617 0.88016 0.91979 0.92300 1.22167 0.97677 0.94213 0.84599 0.91442 1.19521 0.98939 0.93962 0.95615 1.20913 1.00029 0.95203 0.96673 1.21305 0.99372 1.00350 0.94865 1.21449 0.97658 0.95520 0.99577 1.21491 1.00007 0.94755 0.97950 1.21348 0.96574 1.01150 0.94111 0.95392 0.88667 0.89823 0.86705 0.91716 0.88210 0.86820 0.93818 0.94917 0.94951 0.98671 0.98239 0.90128 0.86076 0.83687 0.82738 0.82988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 8.81 71.98 0.63 -2.80 16 2 C -0.05 -1.45 2.25 -12.29 -0.03 -1.48 16 3 H 0.14 2.50 7.57 -2.39 -0.02 2.48 16 4 C 0.52 19.61 6.63 87.66 0.58 20.19 16 5 O -0.58 -28.78 14.96 -3.05 -0.05 -28.82 16 6 N -0.60 -20.76 2.99 -787.13 -2.35 -23.11 16 7 C 0.09 2.04 4.66 86.84 0.40 2.44 16 8 C -0.11 -2.02 6.35 31.96 0.20 -1.81 16 9 C -0.10 -3.00 4.35 -8.92 -0.04 -3.03 16 10 H 0.11 3.12 8.14 -2.38 -0.02 3.10 16 11 C 0.13 5.18 6.45 86.69 0.56 5.74 16 12 N -0.62 -33.14 3.38 -699.20 -2.36 -35.50 16 13 C -0.24 -13.92 10.25 84.03 0.86 -13.06 16 14 H 0.09 4.86 7.83 -2.91 -0.02 4.84 16 15 C -0.07 -4.34 5.48 84.86 0.47 -3.88 16 16 N -0.95 -63.12 10.24 21.65 0.22 -62.90 16 17 Si 0.98 48.22 29.55 68.60 2.03 50.25 16 18 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 19 H -0.30 -14.78 7.11 99.48 0.71 -14.08 16 20 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 21 C 0.20 10.84 4.91 86.34 0.42 11.27 16 22 C 0.12 4.78 3.55 45.72 0.16 4.94 16 23 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 24 C -0.08 -2.34 4.40 -19.87 -0.09 -2.42 16 25 C -0.11 -3.83 7.92 22.27 0.18 -3.66 16 26 C -0.14 -4.20 10.05 22.27 0.22 -3.98 16 27 C -0.12 -2.89 10.05 22.27 0.22 -2.67 16 28 C -0.12 -2.55 10.05 22.27 0.22 -2.33 16 29 C -0.11 -2.56 9.67 22.27 0.22 -2.34 16 30 H 0.03 0.87 7.41 -2.39 -0.02 0.86 16 31 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.08 1.79 4.99 -2.38 -0.01 1.78 16 33 H 0.11 1.63 7.31 -2.39 -0.02 1.61 16 34 H 0.06 1.60 6.14 -2.39 -0.01 1.58 16 35 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.11 1.57 8.08 -2.39 -0.02 1.55 16 37 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.03 1.19 6.52 -2.39 -0.02 1.17 16 39 H 0.24 15.69 8.31 -92.71 -0.77 14.92 16 40 H 0.00 -0.31 7.33 -2.39 -0.02 -0.33 16 41 H 0.00 -0.04 6.66 -2.39 -0.02 -0.06 16 42 H 0.08 3.37 7.52 -2.91 -0.02 3.35 16 43 H 0.12 3.36 8.06 -2.91 -0.02 3.34 16 44 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 45 H 0.15 2.04 8.06 -2.91 -0.02 2.01 16 46 H 0.15 2.31 7.95 -2.91 -0.02 2.28 16 Total: -1.00 -86.78 356.77 3.66 -83.12 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 0.97 Total: 15.83 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: 5.20 Total: 1.12 kcal Atomic # 7 Polarization: -117.02 SS G_CDS: -4.49 Total: -121.51 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -0.05 Total: -28.82 kcal Atomic # 14 Polarization: 48.22 SS G_CDS: 2.03 Total: 50.25 kcal Total: -86.78 3.66 -83.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076483478.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.515 kcal (2) G-P(sol) polarization free energy of solvation -86.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds