Wall clock time and date at job start Tue Mar 31 2020 10:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 110.91807 * 2 1 4 4 C 1.54913 * 111.00295 * 236.10282 * 2 1 3 5 5 N 1.47431 * 104.83105 * 204.91480 * 4 2 1 6 6 C 1.36942 * 125.64645 * 204.16175 * 5 4 2 7 7 H 1.07995 * 120.00091 * 359.97438 * 6 5 4 8 8 C 1.38810 * 119.99563 * 179.97438 * 6 5 4 9 9 N 1.31621 * 120.00435 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99824 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47316 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47352 * 119.99587 * 10 8 6 13 13 H 1.48496 * 109.47155 * 239.99678 * 10 8 6 14 14 C 1.47020 * 108.70212 * 24.12928 * 5 4 2 15 15 C 1.54326 * 107.27202 * 358.94011 * 14 5 4 16 16 H 1.08996 * 110.72296 * 96.35131 * 15 14 5 17 17 N 1.46499 * 110.71756 * 219.44658 * 15 14 5 18 18 C 1.34783 * 119.99737 * 273.54209 * 17 15 14 19 19 O 1.21284 * 120.00191 * 354.81095 * 18 17 15 20 20 C 1.50704 * 119.99740 * 174.80998 * 18 17 15 21 21 C 1.50707 * 115.54894 * 279.26716 * 20 18 17 22 22 C 1.38232 * 119.99915 * 149.59325 * 21 20 18 23 23 C 1.38234 * 119.99965 * 179.74298 * 22 21 20 24 24 C 1.38234 * 119.99591 * 0.55306 * 23 22 21 25 25 C 1.38228 * 120.00145 * 359.70203 * 24 23 22 26 26 C 1.38227 * 120.00294 * 0.02562 * 25 24 23 27 27 C 1.52999 * 117.49858 * 133.56087 * 20 18 17 28 28 C 1.52996 * 117.50106 * 64.93682 * 20 18 17 29 29 H 1.08998 * 109.47179 * 296.09456 * 1 2 3 30 30 H 1.08996 * 109.47009 * 56.09378 * 1 2 3 31 31 H 1.08999 * 109.46855 * 176.09439 * 1 2 3 32 32 H 1.08995 * 110.36967 * 86.08099 * 4 2 1 33 33 H 1.09003 * 110.36667 * 323.75217 * 4 2 1 34 34 H 0.96998 * 120.00562 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.88191 * 239.51779 * 14 5 4 36 36 H 1.09000 * 109.88373 * 118.35878 * 14 5 4 37 37 H 0.97005 * 120.00313 * 93.82036 * 17 15 14 38 38 H 1.08005 * 119.99671 * 0.02562 * 22 21 20 39 39 H 1.07995 * 120.00255 * 180.27679 * 23 22 21 40 40 H 1.08004 * 119.99590 * 179.72735 * 24 23 22 41 41 H 1.08001 * 119.99875 * 180.02562 * 25 24 23 42 42 H 1.08005 * 120.00260 * 179.97438 * 26 25 24 43 43 H 1.09002 * 117.49873 * 359.97438 * 27 20 18 44 44 H 1.08998 * 117.49735 * 145.01579 * 27 20 18 45 45 H 1.09000 * 117.50120 * 214.97776 * 28 20 18 46 46 H 1.09004 * 117.49703 * 0.02562 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0852 -0.8066 -1.2004 5 7 3.4271 -1.2430 -0.7735 6 6 4.4644 -1.5653 -1.6074 7 1 4.3338 -1.5099 -2.6780 8 6 5.6837 -1.9632 -1.0766 9 7 5.8431 -2.0302 0.2282 10 14 7.0990 -2.4021 -2.2140 11 1 6.6661 -2.2456 -3.6259 12 1 8.2480 -1.5006 -1.9453 13 1 7.5077 -3.8096 -1.9752 14 6 3.4674 -1.2742 0.6959 15 6 2.0861 -0.8080 1.2021 16 1 1.4479 -1.6633 1.4238 17 7 2.2287 0.0494 2.3814 18 6 2.3022 -0.5008 3.6096 19 8 2.1562 -1.6968 3.7482 20 6 2.5659 0.3703 4.8108 21 6 4.0083 0.7425 5.0397 22 6 4.3244 1.9472 5.6394 23 6 5.6472 2.2863 5.8542 24 6 6.6541 1.4257 5.4589 25 6 6.3382 0.2234 4.8544 26 6 5.0153 -0.1182 4.6448 27 6 1.6864 0.1575 6.0446 28 6 1.5020 1.4060 5.1797 29 1 -0.3633 0.4520 0.9229 30 1 -0.3633 0.5732 -0.8529 31 1 -0.3633 -1.0253 -0.0700 32 1 2.1560 -0.1719 -2.0837 33 1 1.4518 -1.6703 -1.4026 34 1 6.6950 -2.3086 0.5992 35 1 4.2427 -0.5999 1.0598 36 1 3.6650 -2.2894 1.0398 37 1 2.2661 1.0133 2.2787 38 1 3.5377 2.6215 5.9443 39 1 5.8941 3.2254 6.3267 40 1 7.6878 1.6925 5.6227 41 1 7.1249 -0.4492 4.5460 42 1 4.7684 -1.0574 4.1721 43 1 0.9168 -0.6123 5.9873 44 1 2.1510 0.2865 7.0221 45 1 1.8452 2.3565 5.5883 46 1 0.6111 1.4572 4.5538 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080891298.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:20 Heat of formation + Delta-G solvation = 41.154555 kcal Electronic energy + Delta-G solvation = -26772.313587 eV Core-core repulsion = 23242.208603 eV Total energy + Delta-G solvation = -3530.104984 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.39967 -38.81193 -37.60839 -36.19386 -33.84359 -32.54561 -30.85281 -30.46389 -30.35784 -27.93174 -25.67054 -24.83549 -23.46612 -22.83769 -22.18486 -21.58099 -20.25254 -19.88523 -19.04274 -17.50044 -16.84352 -16.45690 -15.84722 -15.20211 -14.90176 -14.83361 -14.55767 -14.18388 -13.79188 -13.68082 -13.22381 -13.05970 -12.85189 -12.82588 -12.73611 -12.51326 -11.95247 -11.75774 -11.69245 -11.35556 -11.30935 -11.06479 -11.00526 -10.78778 -10.74886 -10.58373 -10.49835 -10.34606 -9.96216 -9.90076 -9.69617 -9.39893 -8.78564 -8.60173 -8.50571 -8.43769 -6.81220 -5.67284 -3.02249 1.39532 1.53898 2.90321 3.38415 3.41529 3.46622 3.49193 3.59925 4.04860 4.45341 4.51521 4.72217 4.84045 4.89980 5.05138 5.08503 5.14290 5.32126 5.35092 5.45016 5.46424 5.50157 5.56850 5.70186 5.72379 5.77176 5.80745 5.96977 5.99556 6.00627 6.08972 6.15614 6.18386 6.21314 6.36210 6.50546 6.54974 6.63652 6.67904 6.74085 6.80531 6.95897 7.11099 7.58260 7.61665 7.86769 7.94936 8.27508 8.60593 9.23698 9.84420 10.49393 11.43257 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.011069 B = 0.005071 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.029330 B = 5520.746314 C = 7403.234545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 H 0.077 0.923 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.230 4.230 7 H 0.079 0.921 8 C -0.007 4.007 9 N -0.916 5.916 10 Si 0.910 3.090 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.174 3.826 15 C 0.119 3.881 16 H 0.086 0.914 17 N -0.705 5.705 18 C 0.554 3.446 19 O -0.533 6.533 20 C -0.115 4.115 21 C -0.042 4.042 22 C -0.121 4.121 23 C -0.123 4.123 24 C -0.123 4.123 25 C -0.108 4.108 26 C -0.094 4.094 27 C -0.136 4.136 28 C -0.164 4.164 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.042 0.958 33 H 0.022 0.978 34 H 0.251 0.749 35 H 0.051 0.949 36 H 0.046 0.954 37 H 0.396 0.604 38 H 0.122 0.878 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.125 0.875 42 H 0.128 0.872 43 H 0.104 0.896 44 H 0.103 0.897 45 H 0.106 0.894 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.333 10.705 11.587 17.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.133 4.133 3 H 0.095 0.905 4 C 0.014 3.986 5 N -0.333 5.333 6 C -0.358 4.358 7 H 0.097 0.903 8 C -0.204 4.204 9 N -0.564 5.564 10 Si 0.741 3.259 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.218 1.218 14 C 0.049 3.951 15 C 0.014 3.986 16 H 0.105 0.895 17 N -0.354 5.354 18 C 0.338 3.662 19 O -0.409 6.409 20 C -0.118 4.118 21 C -0.042 4.042 22 C -0.138 4.138 23 C -0.141 4.141 24 C -0.141 4.141 25 C -0.126 4.126 26 C -0.112 4.112 27 C -0.173 4.173 28 C -0.201 4.201 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.039 0.961 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.230 0.770 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.143 0.857 42 H 0.146 0.854 43 H 0.122 0.878 44 H 0.122 0.878 45 H 0.124 0.876 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.195 9.739 11.672 16.818 hybrid contribution 1.014 0.201 -0.685 1.240 sum -6.181 9.940 10.987 16.053 Atomic orbital electron populations 1.21694 0.95056 1.01778 1.00930 1.22609 0.94797 0.99525 0.96411 0.90462 1.21587 0.87675 0.94992 0.94302 1.44415 1.07826 1.79208 1.01804 1.19087 0.89286 1.38506 0.88932 0.90321 1.24811 0.97816 1.01732 0.95995 1.69983 1.23991 1.53268 1.09126 0.86070 0.82468 0.77752 0.79620 1.20525 1.21817 1.21768 1.21468 0.90059 1.00278 0.83342 1.22521 1.00366 0.92764 0.82906 0.89549 1.45857 1.73646 1.10173 1.05717 1.19180 0.76221 0.87600 0.83157 1.90709 1.49391 1.15122 1.85713 1.20143 0.91208 1.03323 0.97132 1.18673 0.91233 0.94705 0.99625 1.20917 0.96541 0.96026 1.00363 1.21020 0.92698 0.99545 1.00878 1.21159 0.99169 0.94644 0.99141 1.21197 0.96502 0.96862 0.98045 1.21170 0.92426 0.99716 0.97925 1.23027 1.00817 0.99475 0.94011 1.23206 0.99165 0.94286 1.03457 0.93158 0.92781 0.92593 0.94006 0.96053 0.93859 0.93039 0.93561 0.76990 0.86056 0.86259 0.86272 0.85711 0.85390 0.87757 0.87841 0.87585 0.87976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.31 37.16 0.35 -1.48 16 2 C -0.11 -1.91 3.25 -88.47 -0.29 -2.20 16 3 H 0.08 1.26 8.00 -51.92 -0.42 0.84 16 4 C 0.14 2.89 6.70 -2.52 -0.02 2.87 16 5 N -0.61 -15.64 3.39 -170.07 -0.58 -16.21 16 6 C -0.23 -6.47 10.28 -15.06 -0.15 -6.63 16 7 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 8 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 9 N -0.92 -27.30 10.31 55.49 0.57 -26.73 16 10 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 14 C 0.17 4.36 5.12 -3.06 -0.02 4.34 16 15 C 0.12 2.31 2.75 -66.10 -0.18 2.13 16 16 H 0.09 1.78 7.53 -51.93 -0.39 1.39 16 17 N -0.70 -11.70 5.13 -52.03 -0.27 -11.97 16 18 C 0.55 9.63 5.81 -10.98 -0.06 9.57 16 19 O -0.53 -11.42 16.70 5.55 0.09 -11.32 16 20 C -0.11 -1.57 2.33 -156.81 -0.37 -1.94 16 21 C -0.04 -0.60 5.48 -104.62 -0.57 -1.17 16 22 C -0.12 -1.43 9.36 -39.59 -0.37 -1.80 16 23 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 24 C -0.12 -1.55 10.05 -39.59 -0.40 -1.95 16 25 C -0.11 -1.62 10.05 -39.59 -0.40 -2.02 16 26 C -0.09 -1.57 9.32 -39.59 -0.37 -1.94 16 27 C -0.14 -1.54 9.84 -26.73 -0.26 -1.80 16 28 C -0.16 -1.61 9.57 -26.73 -0.26 -1.87 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.76 8.07 -51.93 -0.42 0.34 16 32 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.02 0.44 7.98 -51.93 -0.41 0.03 16 34 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.05 1.42 7.27 -51.93 -0.38 1.04 16 36 H 0.05 1.35 7.51 -51.93 -0.39 0.96 16 37 H 0.40 5.62 8.52 -40.82 -0.35 5.28 16 38 H 0.12 1.12 5.95 -52.48 -0.31 0.81 16 39 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.12 1.23 8.06 -52.48 -0.42 0.80 16 41 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 42 H 0.13 2.49 7.35 -52.48 -0.39 2.11 16 43 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 44 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.11 0.84 6.10 -51.93 -0.32 0.52 16 46 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 374.60 15.07 5.65 5.65 Total: -1.00 -33.07 374.60 -10.54 -43.61 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -7.12 Total: 7.62 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -3.86 Total: -8.01 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: -0.27 Total: -54.91 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.09 Total: -11.32 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.07 -10.54 -43.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080891298.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.764 kcal (2) G-P(sol) polarization free energy of solvation -33.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds