Wall clock time and date at job start Tue Mar 31 2020 10:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 110.91807 * 2 1 4 4 C 1.54913 * 111.00295 * 236.10282 * 2 1 3 5 5 N 1.47431 * 104.83105 * 204.91480 * 4 2 1 6 6 C 1.36942 * 125.64645 * 204.16175 * 5 4 2 7 7 H 1.07995 * 120.00091 * 359.97438 * 6 5 4 8 8 C 1.38810 * 119.99563 * 179.97438 * 6 5 4 9 9 N 1.31621 * 120.00435 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99824 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47316 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47352 * 119.99587 * 10 8 6 13 13 H 1.48496 * 109.47155 * 239.99678 * 10 8 6 14 14 C 1.47020 * 108.70212 * 24.12928 * 5 4 2 15 15 C 1.54326 * 107.27202 * 358.94011 * 14 5 4 16 16 H 1.08996 * 110.72296 * 96.35131 * 15 14 5 17 17 N 1.46499 * 110.71756 * 219.44658 * 15 14 5 18 18 C 1.34783 * 119.99737 * 273.54209 * 17 15 14 19 19 O 1.21284 * 120.00191 * 354.81095 * 18 17 15 20 20 C 1.50704 * 119.99740 * 174.80998 * 18 17 15 21 21 C 1.50707 * 115.54894 * 279.26716 * 20 18 17 22 22 C 1.38232 * 119.99915 * 149.59325 * 21 20 18 23 23 C 1.38234 * 119.99965 * 179.74298 * 22 21 20 24 24 C 1.38234 * 119.99591 * 0.55306 * 23 22 21 25 25 C 1.38228 * 120.00145 * 359.70203 * 24 23 22 26 26 C 1.38227 * 120.00294 * 0.02562 * 25 24 23 27 27 C 1.52999 * 117.49858 * 133.56087 * 20 18 17 28 28 C 1.52996 * 117.50106 * 64.93682 * 20 18 17 29 29 H 1.08998 * 109.47179 * 296.09456 * 1 2 3 30 30 H 1.08996 * 109.47009 * 56.09378 * 1 2 3 31 31 H 1.08999 * 109.46855 * 176.09439 * 1 2 3 32 32 H 1.08995 * 110.36967 * 86.08099 * 4 2 1 33 33 H 1.09003 * 110.36667 * 323.75217 * 4 2 1 34 34 H 0.96998 * 120.00562 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.88191 * 239.51779 * 14 5 4 36 36 H 1.09000 * 109.88373 * 118.35878 * 14 5 4 37 37 H 0.97005 * 120.00313 * 93.82036 * 17 15 14 38 38 H 1.08005 * 119.99671 * 0.02562 * 22 21 20 39 39 H 1.07995 * 120.00255 * 180.27679 * 23 22 21 40 40 H 1.08004 * 119.99590 * 179.72735 * 24 23 22 41 41 H 1.08001 * 119.99875 * 180.02562 * 25 24 23 42 42 H 1.08005 * 120.00260 * 179.97438 * 26 25 24 43 43 H 1.09002 * 117.49873 * 359.97438 * 27 20 18 44 44 H 1.08998 * 117.49735 * 145.01579 * 27 20 18 45 45 H 1.09000 * 117.50120 * 214.97776 * 28 20 18 46 46 H 1.09004 * 117.49703 * 0.02562 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0852 -0.8066 -1.2004 5 7 3.4271 -1.2430 -0.7735 6 6 4.4644 -1.5653 -1.6074 7 1 4.3338 -1.5099 -2.6780 8 6 5.6837 -1.9632 -1.0766 9 7 5.8431 -2.0302 0.2282 10 14 7.0990 -2.4021 -2.2140 11 1 6.6661 -2.2456 -3.6259 12 1 8.2480 -1.5006 -1.9453 13 1 7.5077 -3.8096 -1.9752 14 6 3.4674 -1.2742 0.6959 15 6 2.0861 -0.8080 1.2021 16 1 1.4479 -1.6633 1.4238 17 7 2.2287 0.0494 2.3814 18 6 2.3022 -0.5008 3.6096 19 8 2.1562 -1.6968 3.7482 20 6 2.5659 0.3703 4.8108 21 6 4.0083 0.7425 5.0397 22 6 4.3244 1.9472 5.6394 23 6 5.6472 2.2863 5.8542 24 6 6.6541 1.4257 5.4589 25 6 6.3382 0.2234 4.8544 26 6 5.0153 -0.1182 4.6448 27 6 1.6864 0.1575 6.0446 28 6 1.5020 1.4060 5.1797 29 1 -0.3633 0.4520 0.9229 30 1 -0.3633 0.5732 -0.8529 31 1 -0.3633 -1.0253 -0.0700 32 1 2.1560 -0.1719 -2.0837 33 1 1.4518 -1.6703 -1.4026 34 1 6.6950 -2.3086 0.5992 35 1 4.2427 -0.5999 1.0598 36 1 3.6650 -2.2894 1.0398 37 1 2.2661 1.0133 2.2787 38 1 3.5377 2.6215 5.9443 39 1 5.8941 3.2254 6.3267 40 1 7.6878 1.6925 5.6227 41 1 7.1249 -0.4492 4.5460 42 1 4.7684 -1.0574 4.1721 43 1 0.9168 -0.6123 5.9873 44 1 2.1510 0.2865 7.0221 45 1 1.8452 2.3565 5.5883 46 1 0.6111 1.4572 4.5538 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080891298.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:19 Heat of formation + Delta-G solvation = 20.470077 kcal Electronic energy + Delta-G solvation = -26773.210533 eV Core-core repulsion = 23242.208603 eV Total energy + Delta-G solvation = -3531.001930 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.63221 -40.13912 -39.11930 -37.33360 -35.64611 -34.24090 -32.20007 -31.89164 -31.47226 -29.70569 -27.45397 -26.17891 -24.98092 -23.80101 -23.32070 -22.75462 -21.85862 -21.56588 -20.34434 -18.94838 -18.56864 -17.63591 -17.39196 -16.92753 -16.22661 -16.07074 -15.74334 -15.58723 -15.39735 -15.01304 -14.74591 -14.50568 -14.24102 -14.11811 -13.83047 -13.73597 -13.68103 -13.36408 -13.08204 -12.92799 -12.65042 -12.61254 -12.29124 -12.19045 -12.07695 -12.01882 -11.89320 -11.70909 -11.62789 -11.55540 -11.46616 -10.81803 -10.76433 -10.03660 -9.84856 -9.53020 -8.95946 -7.86866 -5.25484 0.36422 0.47151 1.40846 1.42961 1.52939 1.53349 2.11084 2.46254 2.59148 3.02735 3.31116 3.48132 3.49385 3.66901 3.78512 3.84679 3.98491 4.02539 4.07812 4.10950 4.16980 4.25510 4.44749 4.51531 4.57942 4.67118 4.69839 4.72256 4.77574 4.85563 4.96612 5.04274 5.05379 5.07802 5.10769 5.19890 5.21105 5.26916 5.41512 5.47324 5.54307 5.57801 5.61262 5.65877 5.75277 6.08688 6.13039 6.56077 7.02978 7.24488 7.72555 8.36543 9.21905 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.011069 B = 0.005071 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.029330 B = 5520.746314 C = 7403.234545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.092 4.092 3 H 0.091 0.909 4 C 0.132 3.868 5 N -0.628 5.628 6 C -0.242 4.242 7 H 0.089 0.911 8 C -0.070 4.070 9 N -0.950 5.950 10 Si 0.979 3.021 11 H -0.259 1.259 12 H -0.291 1.291 13 H -0.296 1.296 14 C 0.193 3.807 15 C 0.134 3.866 16 H 0.071 0.929 17 N -0.694 5.694 18 C 0.550 3.450 19 O -0.586 6.586 20 C -0.144 4.144 21 C -0.044 4.044 22 C -0.111 4.111 23 C -0.112 4.112 24 C -0.125 4.125 25 C -0.131 4.131 26 C -0.133 4.133 27 C -0.136 4.136 28 C -0.124 4.124 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.025 0.975 34 H 0.242 0.758 35 H 0.015 0.985 36 H -0.016 1.016 37 H 0.412 0.588 38 H 0.163 0.837 39 H 0.162 0.838 40 H 0.144 0.856 41 H 0.111 0.889 42 H 0.075 0.925 43 H 0.093 0.907 44 H 0.121 0.879 45 H 0.141 0.859 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.096 15.044 12.150 21.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.112 4.112 3 H 0.110 0.890 4 C 0.007 3.993 5 N -0.354 5.354 6 C -0.371 4.371 7 H 0.107 0.893 8 C -0.263 4.263 9 N -0.599 5.599 10 Si 0.808 3.192 11 H -0.183 1.183 12 H -0.218 1.218 13 H -0.224 1.224 14 C 0.066 3.934 15 C 0.028 3.972 16 H 0.089 0.911 17 N -0.344 5.344 18 C 0.337 3.663 19 O -0.466 6.466 20 C -0.148 4.148 21 C -0.045 4.045 22 C -0.129 4.129 23 C -0.130 4.130 24 C -0.143 4.143 25 C -0.150 4.150 26 C -0.152 4.152 27 C -0.173 4.173 28 C -0.160 4.160 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.043 0.957 34 H 0.052 0.948 35 H 0.033 0.967 36 H 0.002 0.998 37 H 0.249 0.751 38 H 0.180 0.820 39 H 0.179 0.821 40 H 0.162 0.838 41 H 0.129 0.871 42 H 0.093 0.907 43 H 0.112 0.888 44 H 0.139 0.861 45 H 0.158 0.842 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.999 14.126 12.207 20.725 hybrid contribution 1.570 -1.202 -0.862 2.157 sum -7.429 12.925 11.344 18.733 Atomic orbital electron populations 1.21650 0.91406 1.02280 1.03206 1.22536 0.97506 0.98786 0.92373 0.89034 1.21875 0.85196 0.95799 0.96458 1.44743 1.09557 1.79245 1.01896 1.19553 0.90078 1.37661 0.89827 0.89280 1.25742 1.00714 1.02370 0.97429 1.70266 1.23956 1.54517 1.11111 0.84992 0.78913 0.76717 0.78626 1.18334 1.21814 1.22371 1.21039 0.92647 0.96082 0.83584 1.22080 0.96440 0.93639 0.85048 0.91129 1.45695 1.73213 1.10603 1.04847 1.19976 0.74492 0.87456 0.84336 1.90671 1.51540 1.17773 1.86590 1.20028 0.92178 1.06064 0.96487 1.18762 0.90654 0.95274 0.99794 1.21319 0.98010 0.94845 0.98695 1.21536 0.92023 1.00320 0.99094 1.21454 1.01171 0.93438 0.98231 1.21235 0.95558 0.98496 0.99676 1.20949 0.94431 0.99067 1.00739 1.23151 0.99676 1.00541 0.93946 1.23445 0.97096 0.94340 1.01148 0.91138 0.90134 0.93123 0.92491 0.95681 0.94825 0.96685 0.99771 0.75139 0.81950 0.82077 0.83826 0.87130 0.90702 0.88839 0.86092 0.84153 0.86671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 9.31 71.98 0.67 -2.33 16 2 C -0.09 -2.99 3.25 -9.40 -0.03 -3.02 16 3 H 0.09 2.75 8.00 -2.38 -0.02 2.73 16 4 C 0.13 5.36 6.70 86.86 0.58 5.94 16 5 N -0.63 -33.78 3.39 -691.97 -2.35 -36.13 16 6 C -0.24 -14.09 10.28 84.03 0.86 -13.22 16 7 H 0.09 4.86 7.83 -2.91 -0.02 4.84 16 8 C -0.07 -4.17 5.49 84.86 0.47 -3.70 16 9 N -0.95 -61.02 10.31 21.65 0.22 -60.80 16 10 Si 0.98 47.72 29.55 68.60 2.03 49.75 16 11 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 12 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 13 H -0.30 -14.60 7.11 99.48 0.71 -13.90 16 14 C 0.19 10.46 5.12 86.73 0.44 10.91 16 15 C 0.13 5.42 2.75 46.18 0.13 5.55 16 16 H 0.07 3.10 7.53 -2.39 -0.02 3.08 16 17 N -0.69 -23.65 5.13 -436.91 -2.24 -25.89 16 18 C 0.55 20.15 5.81 87.66 0.51 20.66 16 19 O -0.59 -27.41 16.70 -3.04 -0.05 -27.46 16 20 C -0.14 -3.87 2.33 -53.67 -0.13 -4.00 16 21 C -0.04 -1.26 5.48 -19.86 -0.11 -1.37 16 22 C -0.11 -2.23 9.36 22.27 0.21 -2.03 16 23 C -0.11 -2.15 10.05 22.27 0.22 -1.93 16 24 C -0.13 -3.02 10.05 22.27 0.22 -2.80 16 25 C -0.13 -4.29 10.05 22.26 0.22 -4.07 16 26 C -0.13 -4.91 9.32 22.27 0.21 -4.71 16 27 C -0.14 -2.82 9.84 30.59 0.30 -2.52 16 28 C -0.12 -1.92 9.57 30.59 0.29 -1.63 16 29 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.05 1.26 8.07 -2.39 -0.02 1.24 16 32 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.03 1.02 7.98 -2.39 -0.02 1.00 16 34 H 0.24 15.26 8.31 -92.71 -0.77 14.49 16 35 H 0.01 0.91 7.27 -2.39 -0.02 0.89 16 36 H -0.02 -1.04 7.51 -2.39 -0.02 -1.06 16 37 H 0.41 11.28 8.52 -92.70 -0.79 10.49 16 38 H 0.16 1.91 5.95 -2.91 -0.02 1.89 16 39 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 40 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 41 H 0.11 3.69 8.06 -2.91 -0.02 3.67 16 42 H 0.07 3.46 7.35 -2.91 -0.02 3.44 16 43 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.14 1.25 6.10 -2.39 -0.01 1.24 16 46 H 0.12 1.55 8.14 -2.38 -0.02 1.53 16 Total: -1.00 -82.74 374.60 2.87 -79.87 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: 0.19 Total: 24.92 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: 5.08 Total: -4.25 kcal Atomic # 7 Polarization: -118.46 SS G_CDS: -4.37 Total: -122.82 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -0.05 Total: -27.46 kcal Atomic # 14 Polarization: 47.72 SS G_CDS: 2.03 Total: 49.75 kcal Total: -82.74 2.87 -79.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080891298.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.338 kcal (2) G-P(sol) polarization free energy of solvation -82.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds