Wall clock time and date at job start Tue Mar 31 2020 10:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.88689 * 2 1 4 4 C 1.54907 * 111.00730 * 236.12071 * 2 1 3 5 5 N 1.47420 * 104.83524 * 204.91485 * 4 2 1 6 6 C 1.36932 * 125.65088 * 204.09015 * 5 4 2 7 7 H 1.08001 * 120.00072 * 180.02562 * 6 5 4 8 8 C 1.38815 * 120.00288 * 0.04266 * 6 5 4 9 9 N 1.31619 * 119.99512 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00603 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46967 * 59.99522 * 10 8 6 12 12 H 1.48490 * 109.47539 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.46744 * 300.00148 * 10 8 6 14 14 C 1.47026 * 108.70428 * 24.12518 * 5 4 2 15 15 C 1.54330 * 107.26840 * 358.94103 * 14 5 4 16 16 H 1.08998 * 110.71700 * 96.16950 * 15 14 5 17 17 C 1.52994 * 110.71826 * 219.44364 * 15 14 5 18 18 N 1.46497 * 109.47309 * 293.54328 * 17 15 14 19 19 C 1.34780 * 120.00323 * 180.02562 * 18 17 15 20 20 O 1.21276 * 119.99580 * 0.02562 * 19 18 17 21 21 C 1.50702 * 120.00211 * 180.02562 * 19 18 17 22 22 H 1.09004 * 112.82284 * 48.89292 * 21 19 18 23 23 C 1.53521 * 113.58669 * 179.97438 * 21 19 18 24 24 C 1.51609 * 87.24132 * 114.59513 * 23 21 19 25 25 C 1.38378 * 147.52151 * 180.02562 * 24 23 21 26 26 C 1.38094 * 120.32195 * 179.97438 * 25 24 23 27 27 C 1.38250 * 119.95870 * 0.02562 * 26 25 24 28 28 C 1.38094 * 119.95364 * 0.02562 * 27 26 25 29 29 C 1.38372 * 120.32571 * 359.97438 * 28 27 26 30 30 H 1.09004 * 109.46972 * 182.42609 * 1 2 3 31 31 H 1.08998 * 109.47042 * 302.42241 * 1 2 3 32 32 H 1.08993 * 109.47294 * 62.42978 * 1 2 3 33 33 H 1.08997 * 110.36783 * 86.07204 * 4 2 1 34 34 H 1.08999 * 110.36448 * 323.74946 * 4 2 1 35 35 H 0.97003 * 120.00403 * 180.02562 * 9 8 6 36 36 H 1.08998 * 109.88351 * 118.35702 * 14 5 4 37 37 H 1.08998 * 109.88379 * 239.52492 * 14 5 4 38 38 H 1.08997 * 109.47343 * 53.54751 * 17 15 14 39 39 H 1.09004 * 109.47006 * 173.54978 * 17 15 14 40 40 H 0.96998 * 119.99925 * 0.02562 * 18 17 15 41 41 H 1.09007 * 113.58808 * 229.18674 * 23 21 19 42 42 H 1.09000 * 113.58608 * 359.92210 * 23 21 19 43 43 H 1.07989 * 119.84106 * 359.97438 * 25 24 23 44 44 H 1.08005 * 120.01843 * 180.02562 * 26 25 24 45 45 H 1.07996 * 120.02353 * 179.97438 * 27 26 25 46 46 H 1.07994 * 119.83574 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0853 -0.8061 -1.2006 5 7 3.4271 -1.2427 -0.7738 6 6 4.4640 -1.5660 -1.6077 7 1 5.4125 -1.8763 -1.1948 8 6 4.2962 -1.4945 -2.9839 9 7 3.1406 -1.1155 -3.4870 10 14 5.7108 -1.9348 -4.1215 11 1 6.1185 -3.3426 -3.8824 12 1 5.2783 -1.7771 -5.5332 13 1 6.8606 -1.0342 -3.8530 14 6 3.4675 -1.2743 0.6956 15 6 2.0862 -0.8082 1.2019 16 1 1.4469 -1.6636 1.4203 17 6 2.2350 0.0868 2.4338 18 7 2.7615 -0.7023 3.5501 19 6 2.9754 -0.1189 4.7461 20 8 2.7315 1.0593 4.8983 21 6 3.5175 -0.9306 5.8943 22 1 4.3919 -1.5206 5.6194 23 6 3.7046 -0.1206 7.1849 24 6 2.6253 -0.9895 7.8000 25 6 1.8591 -1.2864 8.9135 26 6 0.9292 -2.3063 8.8682 27 6 0.7611 -3.0362 7.7061 28 6 1.5238 -2.7447 6.5924 29 6 2.4571 -1.7239 6.6324 30 1 -0.3633 -1.0268 0.0435 31 1 -0.3633 0.5510 0.8675 32 1 -0.3633 0.4756 -0.9109 33 1 2.1559 -0.1712 -2.0837 34 1 1.4520 -1.6698 -1.4030 35 1 3.0231 -1.0658 -4.4486 36 1 3.6651 -2.2896 1.0392 37 1 4.2427 -0.6000 1.0597 38 1 2.9223 0.9024 2.2094 39 1 1.2619 0.4960 2.7053 40 1 2.9562 -1.6448 3.4285 41 1 4.6845 -0.2517 7.6440 42 1 3.4201 0.9271 7.0874 43 1 1.9891 -0.7178 9.8223 44 1 0.3335 -2.5335 9.7400 45 1 0.0344 -3.8342 7.6696 46 1 1.3907 -3.3158 5.6856 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092926862.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:28 Heat of formation + Delta-G solvation = 24.979101 kcal Electronic energy + Delta-G solvation = -25551.403202 eV Core-core repulsion = 22020.596797 eV Total energy + Delta-G solvation = -3530.806404 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.93853 -40.29095 -39.39870 -36.31108 -35.93136 -34.67679 -32.56390 -31.78639 -30.89849 -28.66555 -27.86258 -26.95172 -25.84583 -24.34218 -23.05017 -22.08827 -21.46609 -21.17912 -20.42817 -18.90598 -18.37113 -17.66213 -17.27491 -16.84505 -16.42103 -16.16786 -15.75381 -15.70105 -15.36624 -15.17649 -14.69766 -14.38294 -14.09091 -13.91975 -13.88514 -13.54399 -13.51580 -13.39343 -13.02651 -12.96799 -12.86522 -12.77119 -12.65225 -12.46776 -12.00503 -11.92807 -11.84009 -11.63799 -11.50168 -11.41426 -11.27035 -10.92027 -10.72999 -10.12466 -9.77751 -9.51581 -8.87675 -7.76826 -5.21280 0.31650 0.45243 1.46172 1.49186 1.50826 1.55570 2.13792 2.49600 2.82454 3.15087 3.32183 3.41919 3.43881 3.61058 3.74505 3.86672 3.92502 3.98411 4.20475 4.22254 4.29461 4.36971 4.50024 4.61263 4.65285 4.71280 4.74799 4.78535 4.81732 4.85210 4.94995 4.97321 5.01809 5.08681 5.14829 5.17126 5.34492 5.39029 5.42129 5.47323 5.50367 5.57840 5.72012 5.74457 5.84741 6.06041 6.32173 6.49305 7.11482 7.16456 7.79458 8.43131 9.24552 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.021092 B = 0.002627 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.170975 B =10654.335656 C =10975.727073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.101 4.101 3 H 0.065 0.935 4 C 0.163 3.837 5 N -0.629 5.629 6 C -0.240 4.240 7 H 0.080 0.920 8 C -0.068 4.068 9 N -0.949 5.949 10 Si 0.979 3.021 11 H -0.277 1.277 12 H -0.294 1.294 13 H -0.278 1.278 14 C 0.138 3.862 15 C -0.089 4.089 16 H 0.094 0.906 17 C 0.145 3.855 18 N -0.712 5.712 19 C 0.528 3.472 20 O -0.578 6.578 21 C -0.065 4.065 22 H 0.146 0.854 23 C -0.054 4.054 24 C -0.138 4.138 25 C -0.110 4.110 26 C -0.115 4.115 27 C -0.127 4.127 28 C -0.099 4.099 29 C -0.142 4.142 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.068 0.932 34 H -0.010 1.010 35 H 0.247 0.753 36 H 0.029 0.971 37 H 0.021 0.979 38 H 0.053 0.947 39 H 0.072 0.928 40 H 0.413 0.587 41 H 0.121 0.879 42 H 0.091 0.909 43 H 0.135 0.865 44 H 0.152 0.848 45 H 0.149 0.851 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.391 -2.978 24.399 24.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.121 4.121 3 H 0.083 0.917 4 C 0.038 3.962 5 N -0.355 5.355 6 C -0.369 4.369 7 H 0.098 0.902 8 C -0.260 4.260 9 N -0.598 5.598 10 Si 0.808 3.192 11 H -0.203 1.203 12 H -0.220 1.220 13 H -0.204 1.204 14 C 0.013 3.987 15 C -0.108 4.108 16 H 0.112 0.888 17 C 0.021 3.979 18 N -0.363 5.363 19 C 0.315 3.685 20 O -0.458 6.458 21 C -0.085 4.085 22 H 0.163 0.837 23 C -0.091 4.091 24 C -0.138 4.138 25 C -0.128 4.128 26 C -0.133 4.133 27 C -0.144 4.144 28 C -0.117 4.117 29 C -0.142 4.142 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.008 0.992 35 H 0.056 0.944 36 H 0.047 0.953 37 H 0.039 0.961 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.250 0.750 41 H 0.139 0.861 42 H 0.110 0.890 43 H 0.153 0.847 44 H 0.170 0.830 45 H 0.167 0.833 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.519 -2.171 24.279 24.791 hybrid contribution 0.778 -0.654 -1.276 1.631 sum -3.741 -2.825 23.003 23.475 Atomic orbital electron populations 1.21599 0.92845 1.02017 1.02032 1.22440 0.96698 0.98363 0.94633 0.91665 1.21749 0.83737 0.94920 0.95841 1.44802 1.10483 1.79040 1.01147 1.19412 0.91988 1.37410 0.88053 0.90221 1.25631 0.99724 1.02522 0.98149 1.70052 1.24174 1.54794 1.10816 0.85137 0.78428 0.78184 0.77499 1.20323 1.21990 1.20435 1.21497 0.95539 0.97665 0.83994 1.22330 0.96564 0.98494 0.93400 0.88769 1.21186 0.98974 0.93383 0.84369 1.45943 1.65569 1.14494 1.10278 1.20502 0.76993 0.87276 0.83721 1.90671 1.53396 1.17934 1.83779 1.21575 0.98110 0.95877 0.92962 0.83676 1.21818 0.98121 0.98659 0.90540 1.22465 0.98276 0.98100 0.94935 1.20623 0.95837 0.98456 0.97855 1.21407 0.97760 0.94995 0.99113 1.21352 0.99724 1.00741 0.92607 1.20638 0.94787 0.96507 0.99801 1.21825 0.98335 0.97474 0.96595 0.92525 0.90997 0.92804 0.91378 0.99162 0.94362 0.95261 0.96058 0.92838 0.90988 0.75046 0.86119 0.89035 0.84721 0.83046 0.83292 0.85151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.71 9.29 71.98 0.67 -3.04 16 2 C -0.10 -3.66 3.09 -9.40 -0.03 -3.69 16 3 H 0.06 2.44 8.05 -2.39 -0.02 2.42 16 4 C 0.16 7.93 5.36 86.86 0.47 8.39 16 5 N -0.63 -32.17 3.39 -691.99 -2.35 -34.52 16 6 C -0.24 -13.44 10.27 84.03 0.86 -12.57 16 7 H 0.08 4.27 7.83 -2.91 -0.02 4.24 16 8 C -0.07 -3.85 5.49 84.86 0.47 -3.39 16 9 N -0.95 -56.69 10.09 21.65 0.22 -56.47 16 10 Si 0.98 45.69 29.55 68.60 2.03 47.72 16 11 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 12 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 13 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 14 C 0.14 5.42 6.52 86.73 0.57 5.99 16 15 C -0.09 -2.79 2.49 -9.61 -0.02 -2.81 16 16 H 0.09 2.68 8.01 -2.39 -0.02 2.67 16 17 C 0.14 4.07 4.99 86.38 0.43 4.50 16 18 N -0.71 -17.16 5.40 -463.08 -2.50 -19.66 16 19 C 0.53 13.74 7.37 87.66 0.65 14.38 16 20 O -0.58 -19.57 15.70 -3.02 -0.05 -19.62 16 21 C -0.06 -1.25 4.33 -11.83 -0.05 -1.30 16 22 H 0.15 2.03 8.14 -2.38 -0.02 2.02 16 23 C -0.05 -1.00 7.77 30.30 0.24 -0.77 16 24 C -0.14 -2.72 7.49 -19.38 -0.15 -2.87 16 25 C -0.11 -1.84 10.03 22.27 0.22 -1.62 16 26 C -0.12 -1.65 10.04 22.24 0.22 -1.43 16 27 C -0.13 -1.90 10.04 22.24 0.22 -1.68 16 28 C -0.10 -1.77 10.03 22.27 0.22 -1.55 16 29 C -0.14 -2.84 6.98 -19.38 -0.14 -2.97 16 30 H 0.06 1.59 8.11 -2.38 -0.02 1.57 16 31 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.07 3.85 5.87 -2.39 -0.01 3.84 16 34 H -0.01 -0.50 8.04 -2.39 -0.02 -0.52 16 35 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 36 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.02 0.86 7.77 -2.39 -0.02 0.84 16 38 H 0.05 1.71 8.06 -2.39 -0.02 1.69 16 39 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.41 8.14 8.33 -92.71 -0.77 7.37 16 41 H 0.12 1.55 8.14 -2.38 -0.02 1.53 16 42 H 0.09 2.03 7.04 -2.39 -0.02 2.01 16 43 H 0.13 1.71 8.06 -2.92 -0.02 1.68 16 44 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 45 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 46 H 0.13 1.95 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -72.08 373.53 2.40 -69.68 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: 0.20 Total: 19.28 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: 4.85 Total: -6.41 kcal Atomic # 7 Polarization: -106.02 SS G_CDS: -4.63 Total: -110.65 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.05 Total: -19.62 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -72.08 2.40 -69.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092926862.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.659 kcal (2) G-P(sol) polarization free energy of solvation -72.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds