Wall clock time and date at job start Tue Mar 31 2020 10:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47017 * 2 1 4 4 C 1.50700 * 109.47271 * 240.00223 * 2 1 3 5 5 O 1.21287 * 119.99810 * 239.99998 * 4 2 1 6 6 N 1.34767 * 120.00447 * 59.99860 * 4 2 1 7 7 C 1.46500 * 120.00351 * 180.02562 * 6 4 2 8 8 H 1.08994 * 110.56034 * 36.95705 * 7 6 4 9 9 C 1.54849 * 110.62636 * 160.03105 * 7 6 4 10 10 C 1.55867 * 103.43906 * 117.39142 * 9 7 6 11 11 H 1.08996 * 115.31328 * 160.16210 * 10 9 7 12 12 C 1.55845 * 105.75222 * 289.16360 * 10 9 7 13 13 C 1.54855 * 103.44572 * 71.58433 * 12 10 9 14 14 C 1.55848 * 103.44740 * 359.97438 * 13 12 10 15 15 H 1.08996 * 115.56037 * 159.56949 * 14 13 12 16 16 N 1.50242 * 101.74921 * 33.17185 * 14 13 12 17 17 C 1.36932 * 130.83718 * 125.80858 * 16 14 13 18 18 H 1.08002 * 119.99682 * 0.02562 * 17 16 14 19 19 C 1.38809 * 120.00231 * 179.97438 * 17 16 14 20 20 N 1.31623 * 119.99602 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00221 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47042 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.47017 * 120.00156 * 21 19 17 24 24 H 1.48496 * 109.47233 * 240.00097 * 21 19 17 25 25 C 1.50705 * 109.47037 * 119.99822 * 2 1 3 26 26 C 1.38232 * 119.99780 * 240.00198 * 25 2 1 27 27 C 1.38237 * 119.99862 * 179.97438 * 26 25 2 28 28 C 1.38240 * 119.99755 * 0.02562 * 27 26 25 29 29 C 1.38230 * 119.99807 * 0.25407 * 28 27 26 30 30 C 1.38226 * 119.99883 * 59.98169 * 25 2 1 31 31 H 1.09005 * 109.47017 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47415 * 300.00072 * 1 2 3 33 33 H 1.09001 * 109.46803 * 60.00393 * 1 2 3 34 34 H 0.97002 * 119.99662 * 359.97438 * 6 4 2 35 35 H 1.08997 * 110.62994 * 236.97509 * 9 7 6 36 36 H 1.08999 * 110.63247 * 359.97438 * 9 7 6 37 37 H 1.08998 * 110.62813 * 313.09628 * 12 10 9 38 38 H 1.09004 * 110.63090 * 190.07068 * 12 10 9 39 39 H 1.09004 * 110.62268 * 241.51197 * 13 12 10 40 40 H 1.08995 * 110.76585 * 118.55487 * 13 12 10 41 41 H 0.97007 * 119.99509 * 179.97438 * 20 19 17 42 42 H 1.08000 * 120.00084 * 359.97438 * 26 25 2 43 43 H 1.08001 * 120.00086 * 179.97438 * 27 26 25 44 44 H 1.08004 * 119.99762 * 179.97438 * 28 27 26 45 45 H 1.08005 * 119.99687 * 179.72559 * 29 28 27 46 46 H 1.08002 * 120.00222 * 359.97438 * 30 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7297 -1.6965 -1.1192 6 7 1.7068 -0.2500 -2.4545 7 6 2.1948 -0.9409 -3.6507 8 1 2.2054 -2.0192 -3.4923 9 6 1.3304 -0.5755 -4.8824 10 6 2.3395 0.1331 -5.8358 11 1 2.0406 0.1747 -6.8832 12 6 2.6556 1.5071 -5.1717 13 6 3.5242 1.1242 -3.9481 14 6 3.6140 -0.4290 -4.0392 15 1 4.4427 -0.8847 -3.4975 16 7 3.6021 -0.6495 -5.5253 17 6 4.4703 -1.3302 -6.3365 18 1 5.3348 -1.8193 -5.9123 19 6 4.2389 -1.3924 -7.7037 20 7 3.1851 -0.7967 -8.2205 21 14 5.4236 -2.3203 -8.8103 22 1 6.5196 -2.8958 -7.9900 23 1 4.6985 -3.4146 -9.5046 24 1 5.9943 -1.3887 -9.8161 25 6 2.0323 -0.7104 1.2305 26 6 2.8270 -0.0385 2.1404 27 6 3.2873 -0.6900 3.2694 28 6 2.9534 -2.0135 3.4882 29 6 2.1635 -2.6869 2.5753 30 6 1.6980 -2.0336 1.4495 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.1488 0.5385 -2.5435 35 1 0.9118 -1.4730 -5.3377 36 1 0.5383 0.1194 -4.6033 37 1 1.7373 1.9993 -4.8517 38 1 3.2159 2.1445 -5.8558 39 1 3.0364 1.4266 -3.0214 40 1 4.5153 1.5715 -4.0226 41 1 3.0235 -0.8399 -9.1760 42 1 3.0882 0.9953 1.9693 43 1 3.9086 -0.1652 3.9801 44 1 3.3134 -2.5226 4.3700 45 1 1.9062 -3.7222 2.7440 46 1 1.0766 -2.5583 0.7389 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096367392.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:21 Heat of formation + Delta-G solvation = 15.334390 kcal Electronic energy + Delta-G solvation = -26549.058174 eV Core-core repulsion = 23017.833543 eV Total energy + Delta-G solvation = -3531.224630 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.63210 -40.49197 -39.21256 -35.45637 -35.05525 -34.10400 -31.74115 -31.03297 -30.85115 -30.22931 -28.95977 -26.26263 -25.47623 -23.49459 -23.21923 -22.56829 -21.51914 -20.77374 -20.09621 -18.94299 -17.92044 -17.76356 -16.91457 -16.79743 -16.60198 -16.03998 -15.87160 -15.69714 -15.20049 -14.91204 -14.49829 -14.15386 -14.11376 -13.91385 -13.68857 -13.47420 -13.19222 -13.11747 -12.97401 -12.87565 -12.81600 -12.60484 -12.46704 -12.35451 -11.98569 -11.87060 -11.82399 -11.75140 -11.54253 -11.15658 -11.05954 -10.80568 -10.64823 -9.94840 -9.72958 -9.57730 -8.85669 -7.81949 -5.18829 0.47578 0.57813 1.44552 1.45198 1.54922 1.74517 2.24789 2.50081 2.98100 3.33128 3.49168 3.62556 3.83545 3.95138 4.06624 4.14368 4.16918 4.18303 4.28206 4.32548 4.39552 4.43637 4.47908 4.61964 4.66668 4.70963 4.72908 4.80486 4.89548 4.96293 4.99453 5.07089 5.14407 5.16141 5.21048 5.25225 5.30678 5.33439 5.45862 5.56057 5.61513 5.67186 5.74629 5.76954 5.88514 6.17470 6.22248 6.71006 7.02319 7.40401 7.67035 8.55039 9.27087 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.022391 B = 0.003185 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.207783 B = 8789.362897 C = 9322.331591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.063 4.063 3 H 0.131 0.869 4 C 0.511 3.489 5 O -0.581 6.581 6 N -0.697 5.697 7 C 0.149 3.851 8 H 0.047 0.953 9 C -0.122 4.122 10 C 0.140 3.860 11 H 0.114 0.886 12 C -0.123 4.123 13 C -0.117 4.117 14 C 0.118 3.882 15 H 0.058 0.942 16 N -0.622 5.622 17 C -0.223 4.223 18 H 0.068 0.932 19 C -0.063 4.063 20 N -0.943 5.943 21 Si 0.973 3.027 22 H -0.276 1.276 23 H -0.291 1.291 24 H -0.290 1.290 25 C -0.080 4.080 26 C -0.122 4.122 27 C -0.130 4.130 28 C -0.129 4.129 29 C -0.139 4.139 30 C -0.106 4.106 31 H 0.049 0.951 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.414 0.586 35 H 0.045 0.955 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.036 0.964 39 H 0.090 0.910 40 H 0.040 0.960 41 H 0.249 0.751 42 H 0.142 0.858 43 H 0.144 0.856 44 H 0.140 0.860 45 H 0.129 0.871 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.338 6.628 21.618 24.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.084 4.084 3 H 0.149 0.851 4 C 0.298 3.702 5 O -0.461 6.461 6 N -0.349 5.349 7 C 0.042 3.958 8 H 0.065 0.935 9 C -0.162 4.162 10 C 0.035 3.965 11 H 0.131 0.869 12 C -0.162 4.162 13 C -0.156 4.156 14 C 0.010 3.990 15 H 0.076 0.924 16 N -0.345 5.345 17 C -0.352 4.352 18 H 0.086 0.914 19 C -0.256 4.256 20 N -0.593 5.593 21 Si 0.803 3.197 22 H -0.201 1.201 23 H -0.219 1.219 24 H -0.217 1.217 25 C -0.081 4.081 26 C -0.140 4.140 27 C -0.148 4.148 28 C -0.147 4.147 29 C -0.157 4.157 30 C -0.124 4.124 31 H 0.068 0.932 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.252 0.748 35 H 0.064 0.936 36 H 0.117 0.883 37 H 0.111 0.889 38 H 0.055 0.945 39 H 0.109 0.891 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.160 0.840 43 H 0.162 0.838 44 H 0.158 0.842 45 H 0.147 0.853 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.739 5.804 21.405 23.489 hybrid contribution 0.783 -0.762 -1.172 1.602 sum -6.956 5.042 20.233 21.982 Atomic orbital electron populations 1.21809 0.90171 1.02815 1.04578 1.20361 0.99078 1.00670 0.88339 0.85132 1.21139 0.79467 0.84191 0.85372 1.90718 1.39586 1.28508 1.87250 1.45966 1.52792 1.31816 1.04340 1.21998 0.94656 0.95027 0.84137 0.93498 1.23066 0.97585 1.00553 0.94978 1.23829 0.84591 0.89099 0.98991 0.86857 1.22894 0.99499 0.97405 0.96405 1.22823 0.99171 0.95051 0.98538 1.23259 0.95082 0.95625 0.85019 0.92387 1.47081 1.27083 1.59098 1.01213 1.19297 1.02599 1.24324 0.89010 0.91402 1.25384 1.00097 1.02600 0.97468 1.69737 1.29338 1.49165 1.11035 0.85071 0.78241 0.77690 0.78713 1.20054 1.21853 1.21697 1.19555 0.98624 0.94446 0.95448 1.21336 0.97164 1.00991 0.94490 1.21440 1.00187 0.95145 0.98038 1.21445 0.98163 0.95272 0.99846 1.21360 0.98946 1.00512 0.94837 1.20996 0.99903 0.94637 0.96853 0.93199 0.89583 0.89698 0.74761 0.93567 0.88344 0.88892 0.94516 0.89133 0.94153 0.94179 0.84003 0.83779 0.84184 0.85281 0.87725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 8.90 71.98 0.64 -1.23 16 2 C -0.06 -1.20 2.90 -12.28 -0.04 -1.23 16 3 H 0.13 1.74 7.88 -2.38 -0.02 1.72 16 4 C 0.51 14.34 7.02 87.66 0.62 14.95 16 5 O -0.58 -22.58 14.84 -3.05 -0.05 -22.62 16 6 N -0.70 -18.09 3.49 -435.02 -1.52 -19.61 16 7 C 0.15 5.45 3.08 46.59 0.14 5.60 16 8 H 0.05 2.05 7.70 -2.39 -0.02 2.03 16 9 C -0.12 -4.42 6.23 32.22 0.20 -4.22 16 10 C 0.14 6.22 4.70 45.92 0.22 6.43 16 11 H 0.11 5.89 5.70 -2.39 -0.01 5.88 16 12 C -0.12 -4.36 6.47 32.21 0.21 -4.16 16 13 C -0.12 -4.02 6.33 32.21 0.20 -3.82 16 14 C 0.12 5.03 5.30 46.21 0.24 5.28 16 15 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 16 N -0.62 -31.97 3.05 -611.51 -1.86 -33.83 16 17 C -0.22 -12.89 10.59 84.03 0.89 -12.01 16 18 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 19 C -0.06 -3.58 5.50 84.86 0.47 -3.11 16 20 N -0.94 -55.21 10.57 21.65 0.23 -54.99 16 21 Si 0.97 46.84 29.55 68.60 2.03 48.87 16 22 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 23 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 24 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 25 C -0.08 -1.81 4.40 -19.87 -0.09 -1.90 16 26 C -0.12 -2.36 9.67 22.27 0.22 -2.15 16 27 C -0.13 -2.36 10.05 22.27 0.22 -2.13 16 28 C -0.13 -2.47 10.05 22.27 0.22 -2.24 16 29 C -0.14 -3.08 10.05 22.27 0.22 -2.86 16 30 C -0.11 -2.65 7.93 22.27 0.18 -2.48 16 31 H 0.05 0.83 7.39 -2.38 -0.02 0.81 16 32 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.08 0.84 7.56 -2.39 -0.02 0.82 16 34 H 0.41 7.49 7.44 -92.71 -0.69 6.80 16 35 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.10 2.63 7.35 -2.39 -0.02 2.61 16 37 H 0.09 2.45 7.84 -2.39 -0.02 2.43 16 38 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 39 H 0.09 2.41 6.47 -2.39 -0.02 2.39 16 40 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.25 14.12 8.31 -92.70 -0.77 13.35 16 42 H 0.14 2.01 7.95 -2.91 -0.02 1.99 16 43 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 44 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 45 H 0.13 2.43 8.06 -2.91 -0.02 2.40 16 46 H 0.10 2.79 7.52 -2.91 -0.02 2.77 16 Total: -1.00 -73.96 363.80 3.89 -70.07 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: 0.29 Total: 23.38 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: 4.77 Total: -11.27 kcal Atomic # 7 Polarization: -105.28 SS G_CDS: -3.15 Total: -108.43 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.05 Total: -22.62 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.87 kcal Total: -73.96 3.89 -70.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096367392.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.409 kcal (2) G-P(sol) polarization free energy of solvation -73.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds