Wall clock time and date at job start Tue Mar 31 2020 11:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81401 * 103.00170 * 2 1 4 4 H 1.09003 * 109.47211 * 54.99760 * 3 2 1 5 5 C 1.52999 * 109.47141 * 295.00115 * 3 2 1 6 6 C 1.50704 * 109.47269 * 174.99619 * 3 2 1 7 7 O 1.21281 * 119.99737 * 25.00160 * 6 3 2 8 8 N 1.34771 * 120.00010 * 205.00117 * 6 3 2 9 9 C 1.46499 * 119.99876 * 180.02562 * 8 6 3 10 10 C 1.53005 * 109.47146 * 179.97438 * 9 8 6 11 11 H 1.08999 * 109.58222 * 299.95036 * 10 9 8 12 12 C 1.53191 * 109.58583 * 179.52548 * 10 9 8 13 13 C 1.53044 * 109.31020 * 185.57619 * 12 10 9 14 14 C 1.53036 * 109.53677 * 61.36449 * 13 12 10 15 15 C 1.53001 * 109.49947 * 178.67992 * 14 13 12 16 16 C 1.53002 * 109.52623 * 58.60185 * 14 13 12 17 17 C 1.53195 * 109.31558 * 298.63348 * 14 13 12 18 18 N 1.46920 * 109.58707 * 60.23177 * 10 9 8 19 19 C 1.36939 * 120.63068 * 353.37633 * 18 10 9 20 20 H 1.08003 * 119.99846 * 31.15607 * 19 18 10 21 21 C 1.38809 * 120.00007 * 211.15131 * 19 18 10 22 22 N 1.31621 * 120.00056 * 13.88588 * 21 19 18 23 23 Si 1.86803 * 120.00140 * 193.88707 * 21 19 18 24 24 H 1.48493 * 109.47289 * 89.99888 * 23 21 19 25 25 H 1.48502 * 109.46974 * 210.00237 * 23 21 19 26 26 H 1.48507 * 109.46786 * 329.99645 * 23 21 19 27 27 H 1.08997 * 109.47026 * 300.00407 * 1 2 3 28 28 H 1.09002 * 109.46546 * 60.00035 * 1 2 3 29 29 H 1.08995 * 109.47265 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46778 * 299.99910 * 5 3 2 31 31 H 1.08994 * 109.47183 * 59.99712 * 5 3 2 32 32 H 1.08994 * 109.47341 * 180.02562 * 5 3 2 33 33 H 0.96996 * 120.00229 * 359.97438 * 8 6 3 34 34 H 1.08999 * 109.47080 * 59.99714 * 9 8 6 35 35 H 1.08995 * 109.47090 * 299.99730 * 9 8 6 36 36 H 1.09001 * 109.49637 * 305.52444 * 12 10 9 37 37 H 1.09001 * 109.50191 * 65.62335 * 12 10 9 38 38 H 1.08997 * 109.46106 * 301.34568 * 13 12 10 39 39 H 1.09006 * 109.45677 * 181.38257 * 13 12 10 40 40 H 1.08995 * 109.47485 * 179.83336 * 15 14 13 41 41 H 1.09007 * 109.47171 * 299.84279 * 15 14 13 42 42 H 1.09005 * 109.46916 * 59.83427 * 15 14 13 43 43 H 1.09002 * 109.46873 * 300.14273 * 16 14 13 44 44 H 1.09000 * 109.46969 * 60.14423 * 16 14 13 45 45 H 1.09004 * 109.47321 * 180.14280 * 16 14 13 46 46 H 1.08999 * 109.58290 * 294.84843 * 17 14 13 47 47 H 1.09001 * 109.70523 * 174.49141 * 17 14 13 48 48 H 0.97000 * 120.00130 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2542 0.8418 5 6 1.7429 2.4016 -1.3073 6 6 3.7143 1.9386 0.1239 7 8 4.4585 1.0531 -0.2408 8 7 4.2217 3.0755 0.6400 9 6 5.6722 3.2420 0.7599 10 6 5.9797 4.6107 1.3707 11 1 5.5774 5.3954 0.7300 12 6 7.4957 4.7828 1.5083 13 6 7.7918 6.0909 2.2454 14 6 7.1824 6.0371 3.6482 15 6 7.5070 7.3318 4.3960 16 6 7.7639 4.8463 4.4130 17 6 5.6629 5.8792 3.5349 18 7 5.3703 4.7031 2.7044 19 6 4.5449 3.7119 3.1645 20 1 4.7010 2.6903 2.8509 21 6 3.5077 4.0204 4.0339 22 7 3.1420 5.2732 4.2039 23 14 2.6310 2.6573 4.9628 24 1 3.3162 2.4214 6.2589 25 1 1.2223 3.0553 5.2127 26 1 2.6575 1.4114 4.1549 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 2.2355 1.9149 -2.1491 31 1 0.6637 2.2779 -1.3969 32 1 1.9885 3.4635 -1.3076 33 1 3.6265 3.7838 0.9313 34 1 6.1286 3.1743 -0.2276 35 1 6.0761 2.4586 1.4012 36 1 7.9071 3.9460 2.0728 37 1 7.9499 4.8124 0.5179 38 1 7.3587 6.9249 1.6932 39 1 8.8704 6.2279 2.3230 40 1 7.0703 7.2943 5.3940 41 1 8.5883 7.4438 4.4764 42 1 7.0936 8.1800 3.8502 43 1 7.5334 3.9242 3.8793 44 1 8.8451 4.9591 4.4934 45 1 7.3275 4.8073 5.4111 46 1 5.2367 6.7689 3.0715 47 1 5.2326 5.7422 4.5270 48 1 2.4175 5.4888 4.8117 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098922686.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:51 Heat of formation + Delta-G solvation = -28.291284 kcal Electronic energy + Delta-G solvation = -26198.272922 eV Core-core repulsion = 22800.600491 eV Total energy + Delta-G solvation = -3397.672430 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -39.40937 -38.43221 -35.10379 -33.31421 -33.07218 -31.90088 -30.01989 -28.78212 -27.46188 -26.61846 -25.51347 -24.65250 -23.02305 -22.23405 -20.14386 -19.76339 -17.92725 -17.17076 -16.33662 -16.16278 -15.57504 -14.96044 -14.62407 -14.18902 -14.08708 -13.89819 -13.81821 -13.59195 -13.45134 -13.29811 -12.96289 -12.86900 -12.52074 -12.19605 -12.16578 -11.84627 -11.65005 -11.53824 -11.37379 -11.29320 -11.15942 -10.88734 -10.79985 -10.62691 -10.41666 -10.12884 -10.08280 -9.81562 -9.71228 -9.50062 -9.37883 -9.22602 -8.60719 -8.25301 -7.48801 -6.67495 -5.87158 -3.33565 1.65334 2.66486 3.18042 3.31161 3.39388 3.44480 3.78526 4.40785 4.98680 5.04201 5.15133 5.17156 5.17744 5.27167 5.32633 5.43841 5.47821 5.56494 5.60123 5.68478 5.74490 5.78008 5.86573 6.00942 6.06664 6.09140 6.16313 6.22588 6.31417 6.35359 6.43888 6.46519 6.47084 6.51372 6.64396 6.89425 6.92312 7.00167 7.11036 7.14434 7.36307 7.64233 7.77268 8.18653 8.37856 8.79556 9.13554 9.74893 10.33013 11.19070 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.015627 B = 0.004872 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.286652 B = 5746.013351 C = 6847.451365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.196 6.196 3 C -0.090 4.090 4 H 0.109 0.891 5 C -0.138 4.138 6 C 0.529 3.471 7 O -0.545 6.545 8 N -0.686 5.686 9 C 0.136 3.864 10 C 0.161 3.839 11 H 0.031 0.969 12 C -0.130 4.130 13 C -0.095 4.095 14 C -0.095 4.095 15 C -0.133 4.133 16 C -0.124 4.124 17 C 0.188 3.812 18 N -0.585 5.585 19 C -0.249 4.249 20 H 0.070 0.930 21 C 0.010 3.990 22 N -0.899 5.899 23 Si 0.885 3.115 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.273 1.273 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.415 0.585 34 H 0.055 0.945 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.045 0.955 40 H 0.050 0.950 41 H 0.041 0.959 42 H 0.047 0.953 43 H 0.065 0.935 44 H 0.030 0.970 45 H 0.044 0.956 46 H 0.016 0.984 47 H 0.085 0.915 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.001 -0.001 -6.599 6.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 S 0.029 5.971 3 C -0.222 4.222 4 H 0.127 0.873 5 C -0.197 4.197 6 C 0.313 3.687 7 O -0.424 6.424 8 N -0.337 5.337 9 C 0.012 3.988 10 C 0.054 3.946 11 H 0.049 0.951 12 C -0.170 4.170 13 C -0.133 4.133 14 C -0.097 4.097 15 C -0.191 4.191 16 C -0.182 4.182 17 C 0.062 3.938 18 N -0.308 5.308 19 C -0.379 4.379 20 H 0.088 0.912 21 C -0.189 4.189 22 N -0.542 5.542 23 Si 0.715 3.285 24 H -0.214 1.214 25 H -0.218 1.218 26 H -0.198 1.198 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.118 0.882 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.253 0.747 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.084 0.916 44 H 0.049 0.951 45 H 0.063 0.937 46 H 0.035 0.965 47 H 0.103 0.897 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.051 -1.436 -6.745 6.976 hybrid contribution -1.710 0.840 0.957 2.132 sum -0.659 -0.596 -5.788 5.856 Atomic orbital electron populations 1.23516 0.96265 1.06234 1.04817 1.87260 1.04322 1.07618 1.97858 1.23317 0.98492 0.97161 1.03233 0.87308 1.21948 1.01392 1.01231 0.95123 1.19447 0.88219 0.82887 0.78193 1.90672 1.60188 1.41281 1.50257 1.45913 1.08679 1.18348 1.60808 1.21306 0.80205 0.98306 0.98988 1.20731 0.91925 0.93497 0.88480 0.95135 1.22005 0.97522 0.98414 0.99025 1.21407 0.98688 0.97103 0.96106 1.21241 1.00378 0.94188 0.93848 1.21761 0.99724 0.97475 1.00178 1.21702 0.97588 0.99065 0.99802 1.20797 0.87473 0.88187 0.97312 1.44035 1.53561 1.22593 1.10625 1.19201 1.05517 0.88323 1.24827 0.91212 1.25040 0.96738 0.95675 1.01482 1.70003 1.29556 1.16279 1.38412 0.86535 0.78821 0.82316 0.80852 1.21357 1.21826 1.19838 0.90578 0.90588 0.88152 0.90916 0.91754 0.91069 0.74689 0.92687 0.91518 0.91592 0.93128 0.92960 0.93642 0.93057 0.93967 0.93356 0.91591 0.95050 0.93659 0.96541 0.89664 0.93671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 10.45 101.05 1.06 -0.51 16 2 S -0.20 -3.15 21.10 -107.50 -2.27 -5.42 16 3 C -0.09 -1.43 3.17 -27.88 -0.09 -1.52 16 4 H 0.11 1.73 8.14 -51.92 -0.42 1.31 16 5 C -0.14 -1.72 9.08 37.16 0.34 -1.39 16 6 C 0.53 10.03 6.95 -10.99 -0.08 9.96 16 7 O -0.55 -11.96 16.14 5.56 0.09 -11.87 16 8 N -0.69 -12.77 3.84 -60.29 -0.23 -13.01 16 9 C 0.14 2.50 4.43 -4.04 -0.02 2.49 16 10 C 0.16 2.96 3.01 -67.60 -0.20 2.76 16 11 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 12 C -0.13 -2.10 5.03 -26.61 -0.13 -2.24 16 13 C -0.10 -1.51 4.71 -26.69 -0.13 -1.64 16 14 C -0.09 -1.66 0.77 -154.39 -0.12 -1.78 16 15 C -0.13 -2.07 8.48 37.16 0.32 -1.76 16 16 C -0.12 -2.19 7.99 37.16 0.30 -1.90 16 17 C 0.19 4.03 3.95 -3.71 -0.01 4.01 16 18 N -0.58 -12.60 2.41 -164.78 -0.40 -13.00 16 19 C -0.25 -5.94 6.97 -15.06 -0.10 -6.05 16 20 H 0.07 1.75 5.86 -52.48 -0.31 1.44 16 21 C 0.01 0.25 4.97 -17.43 -0.09 0.16 16 22 N -0.90 -23.54 11.23 55.49 0.62 -22.92 16 23 Si 0.89 20.66 29.58 -169.99 -5.03 15.63 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 27 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.08 0.73 7.14 -51.92 -0.37 0.35 16 29 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.67 6.92 -51.93 -0.36 0.31 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.42 7.95 7.39 -40.82 -0.30 7.65 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 1.36 7.42 -51.93 -0.39 0.98 16 36 H 0.07 1.11 6.33 -51.93 -0.33 0.79 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.04 0.58 8.14 -51.92 -0.42 0.16 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.07 1.27 5.97 -51.93 -0.31 0.96 16 44 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.09 2.11 6.19 -51.93 -0.32 1.78 16 48 H 0.25 6.59 8.31 -40.82 -0.34 6.25 16 LS Contribution 377.40 15.07 5.69 5.69 Total: -1.00 -27.64 377.40 -9.07 -36.71 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -8.58 Total: 7.58 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: 1.03 Total: 0.60 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: -0.01 Total: -48.92 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.09 Total: -11.87 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Atomic # 16 Polarization: -3.15 SS G_CDS: -2.27 Total: -5.42 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -27.64 -9.07 -36.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098922686.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.421 kcal (2) G-P(sol) polarization free energy of solvation -27.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds