Wall clock time and date at job start Tue Mar 31 2020 11:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81401 * 103.00170 * 2 1 4 4 H 1.09003 * 109.47211 * 54.99760 * 3 2 1 5 5 C 1.52999 * 109.47141 * 295.00115 * 3 2 1 6 6 C 1.50704 * 109.47269 * 174.99619 * 3 2 1 7 7 O 1.21281 * 119.99737 * 25.00160 * 6 3 2 8 8 N 1.34771 * 120.00010 * 205.00117 * 6 3 2 9 9 C 1.46499 * 119.99876 * 180.02562 * 8 6 3 10 10 C 1.53005 * 109.47146 * 179.97438 * 9 8 6 11 11 H 1.08999 * 109.58222 * 299.95036 * 10 9 8 12 12 C 1.53191 * 109.58583 * 179.52548 * 10 9 8 13 13 C 1.53044 * 109.31020 * 185.57619 * 12 10 9 14 14 C 1.53036 * 109.53677 * 61.36449 * 13 12 10 15 15 C 1.53001 * 109.49947 * 178.67992 * 14 13 12 16 16 C 1.53002 * 109.52623 * 58.60185 * 14 13 12 17 17 C 1.53195 * 109.31558 * 298.63348 * 14 13 12 18 18 N 1.46920 * 109.58707 * 60.23177 * 10 9 8 19 19 C 1.36939 * 120.63068 * 353.37633 * 18 10 9 20 20 H 1.08003 * 119.99846 * 31.15607 * 19 18 10 21 21 C 1.38809 * 120.00007 * 211.15131 * 19 18 10 22 22 N 1.31621 * 120.00056 * 13.88588 * 21 19 18 23 23 Si 1.86803 * 120.00140 * 193.88707 * 21 19 18 24 24 H 1.48493 * 109.47289 * 89.99888 * 23 21 19 25 25 H 1.48502 * 109.46974 * 210.00237 * 23 21 19 26 26 H 1.48507 * 109.46786 * 329.99645 * 23 21 19 27 27 H 1.08997 * 109.47026 * 300.00407 * 1 2 3 28 28 H 1.09002 * 109.46546 * 60.00035 * 1 2 3 29 29 H 1.08995 * 109.47265 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46778 * 299.99910 * 5 3 2 31 31 H 1.08994 * 109.47183 * 59.99712 * 5 3 2 32 32 H 1.08994 * 109.47341 * 180.02562 * 5 3 2 33 33 H 0.96996 * 120.00229 * 359.97438 * 8 6 3 34 34 H 1.08999 * 109.47080 * 59.99714 * 9 8 6 35 35 H 1.08995 * 109.47090 * 299.99730 * 9 8 6 36 36 H 1.09001 * 109.49637 * 305.52444 * 12 10 9 37 37 H 1.09001 * 109.50191 * 65.62335 * 12 10 9 38 38 H 1.08997 * 109.46106 * 301.34568 * 13 12 10 39 39 H 1.09006 * 109.45677 * 181.38257 * 13 12 10 40 40 H 1.08995 * 109.47485 * 179.83336 * 15 14 13 41 41 H 1.09007 * 109.47171 * 299.84279 * 15 14 13 42 42 H 1.09005 * 109.46916 * 59.83427 * 15 14 13 43 43 H 1.09002 * 109.46873 * 300.14273 * 16 14 13 44 44 H 1.09000 * 109.46969 * 60.14423 * 16 14 13 45 45 H 1.09004 * 109.47321 * 180.14280 * 16 14 13 46 46 H 1.08999 * 109.58290 * 294.84843 * 17 14 13 47 47 H 1.09001 * 109.70523 * 174.49141 * 17 14 13 48 48 H 0.97000 * 120.00130 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2542 0.8418 5 6 1.7429 2.4016 -1.3073 6 6 3.7143 1.9386 0.1239 7 8 4.4585 1.0531 -0.2408 8 7 4.2217 3.0755 0.6400 9 6 5.6722 3.2420 0.7599 10 6 5.9797 4.6107 1.3707 11 1 5.5774 5.3954 0.7300 12 6 7.4957 4.7828 1.5083 13 6 7.7918 6.0909 2.2454 14 6 7.1824 6.0371 3.6482 15 6 7.5070 7.3318 4.3960 16 6 7.7639 4.8463 4.4130 17 6 5.6629 5.8792 3.5349 18 7 5.3703 4.7031 2.7044 19 6 4.5449 3.7119 3.1645 20 1 4.7010 2.6903 2.8509 21 6 3.5077 4.0204 4.0339 22 7 3.1420 5.2732 4.2039 23 14 2.6310 2.6573 4.9628 24 1 3.3162 2.4214 6.2589 25 1 1.2223 3.0553 5.2127 26 1 2.6575 1.4114 4.1549 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 2.2355 1.9149 -2.1491 31 1 0.6637 2.2779 -1.3969 32 1 1.9885 3.4635 -1.3076 33 1 3.6265 3.7838 0.9313 34 1 6.1286 3.1743 -0.2276 35 1 6.0761 2.4586 1.4012 36 1 7.9071 3.9460 2.0728 37 1 7.9499 4.8124 0.5179 38 1 7.3587 6.9249 1.6932 39 1 8.8704 6.2279 2.3230 40 1 7.0703 7.2943 5.3940 41 1 8.5883 7.4438 4.4764 42 1 7.0936 8.1800 3.8502 43 1 7.5334 3.9242 3.8793 44 1 8.8451 4.9591 4.4934 45 1 7.3275 4.8073 5.4111 46 1 5.2367 6.7689 3.0715 47 1 5.2326 5.7422 4.5270 48 1 2.4175 5.4888 4.8117 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098922686.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:50 Heat of formation + Delta-G solvation = -42.707562 kcal Electronic energy + Delta-G solvation = -26198.898058 eV Core-core repulsion = 22800.600491 eV Total energy + Delta-G solvation = -3398.297567 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.94176 -39.94219 -36.63630 -35.00375 -34.46452 -33.32235 -31.73600 -29.72258 -28.85485 -28.01335 -27.31544 -25.92328 -24.52255 -23.74186 -21.72362 -21.23776 -19.46375 -18.69122 -17.80260 -17.70805 -17.21463 -16.34293 -16.21243 -15.83424 -15.41637 -15.33841 -15.19204 -15.02118 -14.72471 -14.53191 -14.40909 -14.13519 -13.78549 -13.69881 -13.38946 -13.06534 -13.00509 -12.94042 -12.80650 -12.73479 -12.68193 -12.49669 -12.49119 -12.20118 -12.11126 -11.85921 -11.61791 -11.25658 -11.03521 -10.89813 -10.85661 -10.76427 -10.48138 -9.86568 -8.73356 -8.50530 -7.80284 -5.26190 0.46732 1.38849 1.45942 1.52001 1.56365 1.72865 2.35326 2.50392 3.33793 3.59329 3.73395 3.85660 4.00460 4.04008 4.05157 4.21241 4.30855 4.33457 4.34687 4.43250 4.53413 4.59986 4.67529 4.70170 4.76180 4.87529 4.87788 4.93844 4.96239 5.06538 5.08403 5.10846 5.14880 5.17451 5.26769 5.40810 5.48966 5.54495 5.59428 5.65406 5.74284 5.83176 5.90555 6.47453 6.64980 7.22768 7.27978 7.92332 8.45450 9.23046 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.015627 B = 0.004872 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.286652 B = 5746.013351 C = 6847.451365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 S -0.266 6.266 3 C -0.081 4.081 4 H 0.106 0.894 5 C -0.130 4.130 6 C 0.525 3.475 7 O -0.578 6.578 8 N -0.686 5.686 9 C 0.141 3.859 10 C 0.162 3.838 11 H 0.034 0.966 12 C -0.125 4.125 13 C -0.091 4.091 14 C -0.092 4.092 15 C -0.129 4.129 16 C -0.117 4.117 17 C 0.197 3.803 18 N -0.594 5.594 19 C -0.227 4.227 20 H 0.058 0.942 21 C -0.027 4.027 22 N -0.921 5.921 23 Si 0.926 3.074 24 H -0.297 1.297 25 H -0.293 1.293 26 H -0.279 1.279 27 H 0.079 0.921 28 H 0.098 0.902 29 H 0.118 0.882 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.413 0.587 34 H 0.072 0.928 35 H 0.043 0.957 36 H 0.058 0.942 37 H 0.079 0.921 38 H 0.055 0.945 39 H 0.072 0.928 40 H 0.040 0.960 41 H 0.067 0.933 42 H 0.051 0.949 43 H 0.045 0.955 44 H 0.059 0.941 45 H 0.027 0.973 46 H -0.005 1.005 47 H 0.047 0.953 48 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.543 0.643 -7.867 7.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 S -0.041 6.041 3 C -0.212 4.212 4 H 0.124 0.876 5 C -0.189 4.189 6 C 0.310 3.690 7 O -0.459 6.459 8 N -0.336 5.336 9 C 0.017 3.983 10 C 0.056 3.944 11 H 0.051 0.949 12 C -0.164 4.164 13 C -0.128 4.128 14 C -0.094 4.094 15 C -0.186 4.186 16 C -0.175 4.175 17 C 0.072 3.928 18 N -0.318 5.318 19 C -0.358 4.358 20 H 0.075 0.925 21 C -0.224 4.224 22 N -0.567 5.567 23 Si 0.757 3.243 24 H -0.224 1.224 25 H -0.219 1.219 26 H -0.204 1.204 27 H 0.098 0.902 28 H 0.117 0.883 29 H 0.136 0.864 30 H 0.087 0.913 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.250 0.750 34 H 0.091 0.909 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.098 0.902 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.059 0.941 41 H 0.086 0.914 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.078 0.922 45 H 0.047 0.953 46 H 0.014 0.986 47 H 0.066 0.934 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.605 -0.785 -8.023 8.220 hybrid contribution -1.870 0.597 1.330 2.371 sum -0.265 -0.188 -6.693 6.701 Atomic orbital electron populations 1.23577 0.91310 1.07827 1.06088 1.87450 1.09856 1.08684 1.98076 1.23261 0.96032 0.96946 1.04990 0.87600 1.21939 1.02918 1.01186 0.92836 1.19990 0.89623 0.82170 0.77266 1.90647 1.61388 1.42200 1.51682 1.45940 1.08776 1.18314 1.60559 1.21272 0.80250 0.97457 0.99350 1.20869 0.93536 0.93385 0.86654 0.94877 1.21955 0.95285 0.98478 1.00695 1.21385 1.00184 0.96829 0.94420 1.21153 0.97226 0.95277 0.95706 1.21709 1.01364 0.96273 0.99292 1.21624 0.99235 0.98136 0.98481 1.20570 0.90227 0.87094 0.94932 1.44167 1.53419 1.22010 1.12212 1.19124 1.04796 0.88306 1.23569 0.92490 1.25367 0.97791 0.96469 1.02768 1.70096 1.30165 1.17107 1.39334 0.85891 0.78067 0.80779 0.79534 1.22433 1.21909 1.20435 0.90215 0.88316 0.86382 0.91302 0.89109 0.90241 0.74996 0.90946 0.93890 0.92289 0.90241 0.92626 0.90905 0.94063 0.91365 0.92973 0.93584 0.92236 0.95337 0.98644 0.93409 0.94380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 10.45 113.37 1.19 -1.22 16 2 S -0.27 -8.42 21.10 -56.49 -1.19 -9.61 16 3 C -0.08 -2.52 3.17 29.85 0.09 -2.43 16 4 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 5 C -0.13 -3.02 9.08 71.98 0.65 -2.37 16 6 C 0.52 20.00 6.95 87.66 0.61 20.61 16 7 O -0.58 -25.73 16.14 -3.03 -0.05 -25.78 16 8 N -0.69 -25.62 3.84 -463.06 -1.78 -27.40 16 9 C 0.14 5.14 4.43 86.38 0.38 5.52 16 10 C 0.16 5.81 3.01 44.98 0.14 5.94 16 11 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 12 C -0.12 -3.73 5.03 30.67 0.15 -3.58 16 13 C -0.09 -2.60 4.71 30.62 0.14 -2.45 16 14 C -0.09 -3.09 0.77 -52.10 -0.04 -3.13 16 15 C -0.13 -3.73 8.48 71.98 0.61 -3.12 16 16 C -0.12 -4.00 7.99 71.98 0.58 -3.42 16 17 C 0.20 8.54 3.95 86.36 0.34 8.88 16 18 N -0.59 -25.78 2.41 -675.23 -1.63 -27.41 16 19 C -0.23 -11.05 6.97 84.03 0.59 -10.47 16 20 H 0.06 2.93 5.86 -2.91 -0.02 2.91 16 21 C -0.03 -1.40 4.97 84.86 0.42 -0.98 16 22 N -0.92 -49.50 11.23 21.65 0.24 -49.25 16 23 Si 0.93 43.52 29.58 68.60 2.03 45.55 16 24 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 25 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 26 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 27 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.10 1.55 7.14 -2.39 -0.02 1.53 16 29 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.09 1.63 6.92 -2.39 -0.02 1.61 16 32 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.41 15.88 7.39 -92.71 -0.69 15.20 16 34 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.04 1.78 7.42 -2.39 -0.02 1.76 16 36 H 0.06 1.88 6.33 -2.39 -0.02 1.86 16 37 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 40 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 42 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 43 H 0.05 1.74 5.97 -2.39 -0.01 1.72 16 44 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 47 H 0.05 2.43 6.19 -2.39 -0.01 2.42 16 48 H 0.25 13.20 8.31 -92.71 -0.77 12.43 16 Total: -1.00 -61.74 377.40 3.72 -58.02 By element: Atomic # 1 Polarization: 27.85 SS G_CDS: 0.24 Total: 28.09 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: 5.85 Total: 7.79 kcal Atomic # 7 Polarization: -100.89 SS G_CDS: -3.16 Total: -104.06 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.05 Total: -25.78 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: -8.42 SS G_CDS: -1.19 Total: -9.61 kcal Total: -61.74 3.72 -58.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098922686.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.314 kcal (2) G-P(sol) polarization free energy of solvation -61.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds